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Mutant Information

Mutant Name	FN2709-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2709-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 707578 C-T Hetero INTERGENIC
SBS Chr1 17650758 G-A Homo INTERGENIC
SBS Chr1 19367112 T-A Homo INTERGENIC
SBS Chr1 28012731 A-C Hetero INTERGENIC
SBS Chr1 29440657 C-T Homo INTERGENIC
SBS Chr1 33711404 T-A Homo INTERGENIC
SBS Chr1 42836973 T-A Hetero INTERGENIC
SBS Chr1 42836981 G-A Hetero INTERGENIC
SBS Chr3 7891216 C-T Hetero INTERGENIC
SBS Chr3 11179564 A-G Hetero INTERGENIC
SBS Chr3 14266497 A-G Hetero INTRON
SBS Chr3 16604688 T-A Homo INTERGENIC
SBS Chr3 20463214 T-A Homo INTERGENIC
SBS Chr4 7599775 G-A Hetero INTERGENIC
SBS Chr4 25343125 T-A Homo INTRON
SBS Chr4 29205473 A-T Homo INTRON
SBS Chr4 31527636 C-A Hetero INTERGENIC
SBS Chr5 2194300 G-C Hetero INTERGENIC
SBS Chr5 3947982 C-G Hetero INTERGENIC
SBS Chr5 23426007 C-T Hetero INTERGENIC
SBS Chr5 26099018 A-G Hetero INTERGENIC
SBS Chr6 4230760 T-G Hetero INTERGENIC
SBS Chr6 10875861 G-A Hetero INTERGENIC
SBS Chr7 21498853 T-A Hetero STOP_GAINED OsKitaake07g179200
SBS Chr8 4438658 A-G Hetero INTERGENIC
SBS Chr8 8860819 A-G Hetero INTERGENIC
SBS Chr8 11255390 T-C Hetero INTERGENIC
SBS Chr8 13333755 A-T Hetero INTERGENIC
SBS Chr8 18459429 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g137300
SBS Chr8 21169861 G-A Hetero INTERGENIC
SBS Chr8 23822038 G-A Hetero INTRON
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr9 17432626 G-A Hetero INTERGENIC
SBS Chr10 926833 C-G Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr11 6051839 G-A Hetero INTERGENIC
SBS Chr11 9943521 T-C Hetero INTERGENIC
SBS Chr11 23550164 T-C Hetero INTERGENIC
SBS Chr12 6667440 A-G Homo INTERGENIC
SBS Chr12 15732198 C-T Hetero INTERGENIC
SBS Chr12 16413752 C-A Hetero INTERGENIC
SBS Chr12 18623659 C-A Hetero INTERGENIC
SBS Chr12 18623661 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2490001 2510000 19999 3
Deletion Chr7 3185917 3185919 2
Deletion Chr3 4097681 4097682 1
Deletion Chr3 4256812 4256820 8
Deletion Chr10 13751630 13751632 2
Deletion Chr10 15139773 15139778 5
Deletion Chr5 25925642 25925736 94
Deletion Chr5 27069354 27069355 1
Deletion Chr5 30212669 30212670 1
Deletion Chr1 32330678 32330681 3
Deletion Chr4 33660321 33660323 2
Deletion Chr1 43967075 43967077 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14475430 14475433 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 33485093 34040771
Inversion Chr1 33485106 34040771

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5311748 Chr1 40293922 OsKitaake01g437200
Translocation Chr8 5316063 Chr1 40137385 OsKitaake01g435600
Translocation Chr9 7697909 Chr5 15361163
Translocation Chr9 7697918 Chr5 15361591
Translocation Chr5 17321851 Chr2 11227857 OsKitaake05g132800
Translocation Chr5 17321853 Chr2 11227323 OsKitaake05g132800
Translocation Chr11 23343872 Chr2 6094572

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	707578	C-T	Hetero	INTERGENIC
SBS	Chr1	17650758	G-A	Homo	INTERGENIC
SBS	Chr1	19367112	T-A	Homo	INTERGENIC
SBS	Chr1	28012731	A-C	Hetero	INTERGENIC
SBS	Chr1	29440657	C-T	Homo	INTERGENIC
SBS	Chr1	33711404	T-A	Homo	INTERGENIC
SBS	Chr1	42836973	T-A	Hetero	INTERGENIC
SBS	Chr1	42836981	G-A	Hetero	INTERGENIC
SBS	Chr3	7891216	C-T	Hetero	INTERGENIC
SBS	Chr3	11179564	A-G	Hetero	INTERGENIC
SBS	Chr3	14266497	A-G	Hetero	INTRON
SBS	Chr3	16604688	T-A	Homo	INTERGENIC
SBS	Chr3	20463214	T-A	Homo	INTERGENIC
SBS	Chr4	7599775	G-A	Hetero	INTERGENIC
SBS	Chr4	25343125	T-A	Homo	INTRON
SBS	Chr4	29205473	A-T	Homo	INTRON
SBS	Chr4	31527636	C-A	Hetero	INTERGENIC
SBS	Chr5	2194300	G-C	Hetero	INTERGENIC
SBS	Chr5	3947982	C-G	Hetero	INTERGENIC
SBS	Chr5	23426007	C-T	Hetero	INTERGENIC
SBS	Chr5	26099018	A-G	Hetero	INTERGENIC
SBS	Chr6	4230760	T-G	Hetero	INTERGENIC
SBS	Chr6	10875861	G-A	Hetero	INTERGENIC
SBS	Chr7	21498853	T-A	Hetero	STOP_GAINED	OsKitaake07g179200
SBS	Chr8	4438658	A-G	Hetero	INTERGENIC
SBS	Chr8	8860819	A-G	Hetero	INTERGENIC
SBS	Chr8	11255390	T-C	Hetero	INTERGENIC
SBS	Chr8	13333755	A-T	Hetero	INTERGENIC
SBS	Chr8	18459429	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g137300
SBS	Chr8	21169861	G-A	Hetero	INTERGENIC
SBS	Chr8	23822038	G-A	Hetero	INTRON
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr9	17432626	G-A	Hetero	INTERGENIC
SBS	Chr10	926833	C-G	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr11	6051839	G-A	Hetero	INTERGENIC
SBS	Chr11	9943521	T-C	Hetero	INTERGENIC
SBS	Chr11	23550164	T-C	Hetero	INTERGENIC
SBS	Chr12	6667440	A-G	Homo	INTERGENIC
SBS	Chr12	15732198	C-T	Hetero	INTERGENIC
SBS	Chr12	16413752	C-A	Hetero	INTERGENIC
SBS	Chr12	18623659	C-A	Hetero	INTERGENIC
SBS	Chr12	18623661	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2490001	2510000	19999	3
Deletion	Chr7	3185917	3185919	2
Deletion	Chr3	4097681	4097682	1
Deletion	Chr3	4256812	4256820	8
Deletion	Chr10	13751630	13751632	2
Deletion	Chr10	15139773	15139778	5
Deletion	Chr5	25925642	25925736	94
Deletion	Chr5	27069354	27069355	1
Deletion	Chr5	30212669	30212670	1
Deletion	Chr1	32330678	32330681	3
Deletion	Chr4	33660321	33660323	2
Deletion	Chr1	43967075	43967077	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	33485093	34040771
Inversion	Chr1	33485106	34040771

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes