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Mutant Information

Mutant Name	FN2709-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2709-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 84

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 707578 C-T Hetero INTERGENIC
SBS Chr1 16725722 G-T Hetero INTERGENIC
SBS Chr1 17650758 G-A Homo INTERGENIC
SBS Chr1 19367112 T-A Homo INTERGENIC
SBS Chr1 20575475 C-G Hetero INTERGENIC
SBS Chr1 21844483 G-A Hetero INTERGENIC
SBS Chr1 23169237 T-A Hetero INTRON
SBS Chr1 23701824 G-A Hetero INTERGENIC
SBS Chr1 29440657 C-T Homo INTERGENIC
SBS Chr1 33711404 T-A Homo INTERGENIC
SBS Chr1 42836973 T-A Hetero INTERGENIC
SBS Chr1 42836981 G-A Hetero INTERGENIC
SBS Chr2 10614877 G-A Hetero INTERGENIC
SBS Chr2 22137170 C-G Hetero INTERGENIC
SBS Chr2 35670481 C-T Hetero INTERGENIC
SBS Chr3 6643990 A-G Hetero INTRON
SBS Chr3 11179564 A-G Hetero INTERGENIC
SBS Chr3 14266497 A-G Hetero INTRON
SBS Chr3 14972406 G-A Hetero INTERGENIC
SBS Chr3 16604688 T-A Homo INTERGENIC
SBS Chr3 20463214 T-A Homo INTERGENIC
SBS Chr3 24510927 G-A Hetero INTRON
SBS Chr3 34213511 G-T Hetero UTR_3_PRIME
SBS Chr4 10234 C-T Hetero INTERGENIC
SBS Chr4 4008791 A-C Hetero INTERGENIC
SBS Chr4 7599775 G-A Hetero INTERGENIC
SBS Chr4 16857967 C-T Hetero INTERGENIC
SBS Chr4 22677496 C-A Hetero INTERGENIC
SBS Chr4 22677836 G-A Hetero INTERGENIC
SBS Chr4 25343125 T-A Homo INTRON
SBS Chr4 26812145 G-A Hetero INTERGENIC
SBS Chr4 27741579 T-G Hetero INTRON
SBS Chr4 29205473 A-T Homo INTRON
SBS Chr4 29270261 G-A Hetero INTERGENIC
SBS Chr4 31527636 C-A Hetero INTERGENIC
SBS Chr5 1735617 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g020266
SBS Chr5 5591140 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g059900
SBS Chr5 8112116 G-A Hetero INTRON
SBS Chr5 23426006 G-T Hetero INTERGENIC
SBS Chr5 23426007 C-T Hetero INTERGENIC
SBS Chr5 26099018 A-G Hetero INTERGENIC
SBS Chr5 30110428 A-G Hetero INTERGENIC
SBS Chr6 3740654 G-A Hetero INTERGENIC
SBS Chr6 10875861 G-A Hetero INTERGENIC
SBS Chr7 9939351 C-G Hetero INTERGENIC
SBS Chr7 10392596 G-C Hetero INTERGENIC
SBS Chr7 11528611 C-A Hetero INTERGENIC
SBS Chr7 11932412 G-C Hetero INTERGENIC
SBS Chr7 21498853 T-A Hetero STOP_GAINED OsKitaake07g179200
SBS Chr7 22715324 C-T Hetero INTERGENIC
SBS Chr7 28370171 T-C Hetero INTERGENIC
SBS Chr8 4438658 A-G Hetero INTERGENIC
SBS Chr8 6251088 G-A Hetero INTERGENIC
SBS Chr8 8860819 A-G Hetero INTERGENIC
SBS Chr8 11255390 T-C Hetero INTERGENIC
SBS Chr8 13333755 A-T Hetero INTERGENIC
SBS Chr8 14512431 G-A Hetero INTERGENIC
SBS Chr8 18459429 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g137300
SBS Chr8 22500847 C-A Hetero INTERGENIC
SBS Chr8 23822038 G-A Hetero INTRON
SBS Chr8 25548344 G-T Hetero INTERGENIC
SBS Chr9 563329 T-C Hetero INTERGENIC
SBS Chr9 11927063 G-A Hetero INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 926833 C-G Hetero INTERGENIC
SBS Chr10 4164078 A-T Hetero INTERGENIC
SBS Chr10 10100088 A-G Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr10 19403513 C-T Hetero INTERGENIC
SBS Chr10 23901385 G-A Hetero UTR_3_PRIME
SBS Chr11 16037174 C-T Hetero INTERGENIC
SBS Chr11 23550164 T-C Hetero INTERGENIC
SBS Chr11 24260154 C-T Hetero INTERGENIC
SBS Chr11 27148827 A-T Hetero INTERGENIC
SBS Chr11 27937763 C-T Hetero INTERGENIC
SBS Chr12 4773017 C-T Hetero INTERGENIC
SBS Chr12 5033894 C-T Hetero INTERGENIC
SBS Chr12 6512402 C-T Hetero INTRON
SBS Chr12 6667440 A-G Homo INTERGENIC
SBS Chr12 8092774 G-C Hetero INTERGENIC
SBS Chr12 15732198 C-T Hetero INTERGENIC
SBS Chr12 18623659 C-A Hetero INTERGENIC
SBS Chr12 18623661 C-T Hetero INTERGENIC
SBS Chr12 25351392 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g207400

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2492001 2509000 16999 3
Deletion Chr7 3185917 3185919 2
Deletion Chr3 4097681 4097682 1
Deletion Chr3 4256812 4256820 8
Deletion Chr8 4979658 4979659 1
Deletion Chr10 13751630 13751632 2
Deletion Chr10 15139773 15139778 5
Deletion Chr8 28701495 28701497 2
Deletion Chr1 32330678 32330684 6
Deletion Chr1 43967075 43967077 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 27995690 27995693 2
Insertion Chr11 7814990 7814993 2
Insertion Chr10 8612603 8612607 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 33485093 34040771
Inversion Chr1 33485106 34040771

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5311748 Chr1 40293922 OsKitaake01g437200
Translocation Chr8 5316063 Chr1 40137385 OsKitaake01g435600
Translocation Chr9 7697909 Chr5 15361163
Translocation Chr9 7697918 Chr5 15361591
Translocation Chr5 17321851 Chr2 11227857 OsKitaake05g132800
Translocation Chr5 17321853 Chr2 11227323 OsKitaake05g132800
Translocation Chr11 23343872 Chr2 6094572

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	707578	C-T	Hetero	INTERGENIC
SBS	Chr1	16725722	G-T	Hetero	INTERGENIC
SBS	Chr1	17650758	G-A	Homo	INTERGENIC
SBS	Chr1	19367112	T-A	Homo	INTERGENIC
SBS	Chr1	20575475	C-G	Hetero	INTERGENIC
SBS	Chr1	21844483	G-A	Hetero	INTERGENIC
SBS	Chr1	23169237	T-A	Hetero	INTRON
SBS	Chr1	23701824	G-A	Hetero	INTERGENIC
SBS	Chr1	29440657	C-T	Homo	INTERGENIC
SBS	Chr1	33711404	T-A	Homo	INTERGENIC
SBS	Chr1	42836973	T-A	Hetero	INTERGENIC
SBS	Chr1	42836981	G-A	Hetero	INTERGENIC
SBS	Chr2	10614877	G-A	Hetero	INTERGENIC
SBS	Chr2	22137170	C-G	Hetero	INTERGENIC
SBS	Chr2	35670481	C-T	Hetero	INTERGENIC
SBS	Chr3	6643990	A-G	Hetero	INTRON
SBS	Chr3	11179564	A-G	Hetero	INTERGENIC
SBS	Chr3	14266497	A-G	Hetero	INTRON
SBS	Chr3	14972406	G-A	Hetero	INTERGENIC
SBS	Chr3	16604688	T-A	Homo	INTERGENIC
SBS	Chr3	20463214	T-A	Homo	INTERGENIC
SBS	Chr3	24510927	G-A	Hetero	INTRON
SBS	Chr3	34213511	G-T	Hetero	UTR_3_PRIME
SBS	Chr4	10234	C-T	Hetero	INTERGENIC
SBS	Chr4	4008791	A-C	Hetero	INTERGENIC
SBS	Chr4	7599775	G-A	Hetero	INTERGENIC
SBS	Chr4	16857967	C-T	Hetero	INTERGENIC
SBS	Chr4	22677496	C-A	Hetero	INTERGENIC
SBS	Chr4	22677836	G-A	Hetero	INTERGENIC
SBS	Chr4	25343125	T-A	Homo	INTRON
SBS	Chr4	26812145	G-A	Hetero	INTERGENIC
SBS	Chr4	27741579	T-G	Hetero	INTRON
SBS	Chr4	29205473	A-T	Homo	INTRON
SBS	Chr4	29270261	G-A	Hetero	INTERGENIC
SBS	Chr4	31527636	C-A	Hetero	INTERGENIC
SBS	Chr5	1735617	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g020266
SBS	Chr5	5591140	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g059900
SBS	Chr5	8112116	G-A	Hetero	INTRON
SBS	Chr5	23426006	G-T	Hetero	INTERGENIC
SBS	Chr5	23426007	C-T	Hetero	INTERGENIC
SBS	Chr5	26099018	A-G	Hetero	INTERGENIC
SBS	Chr5	30110428	A-G	Hetero	INTERGENIC
SBS	Chr6	3740654	G-A	Hetero	INTERGENIC
SBS	Chr6	10875861	G-A	Hetero	INTERGENIC
SBS	Chr7	9939351	C-G	Hetero	INTERGENIC
SBS	Chr7	10392596	G-C	Hetero	INTERGENIC
SBS	Chr7	11528611	C-A	Hetero	INTERGENIC
SBS	Chr7	11932412	G-C	Hetero	INTERGENIC
SBS	Chr7	21498853	T-A	Hetero	STOP_GAINED	OsKitaake07g179200
SBS	Chr7	22715324	C-T	Hetero	INTERGENIC
SBS	Chr7	28370171	T-C	Hetero	INTERGENIC
SBS	Chr8	4438658	A-G	Hetero	INTERGENIC
SBS	Chr8	6251088	G-A	Hetero	INTERGENIC
SBS	Chr8	8860819	A-G	Hetero	INTERGENIC
SBS	Chr8	11255390	T-C	Hetero	INTERGENIC
SBS	Chr8	13333755	A-T	Hetero	INTERGENIC
SBS	Chr8	14512431	G-A	Hetero	INTERGENIC
SBS	Chr8	18459429	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g137300
SBS	Chr8	22500847	C-A	Hetero	INTERGENIC
SBS	Chr8	23822038	G-A	Hetero	INTRON
SBS	Chr8	25548344	G-T	Hetero	INTERGENIC
SBS	Chr9	563329	T-C	Hetero	INTERGENIC
SBS	Chr9	11927063	G-A	Hetero	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	926833	C-G	Hetero	INTERGENIC
SBS	Chr10	4164078	A-T	Hetero	INTERGENIC
SBS	Chr10	10100088	A-G	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr10	19403513	C-T	Hetero	INTERGENIC
SBS	Chr10	23901385	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	16037174	C-T	Hetero	INTERGENIC
SBS	Chr11	23550164	T-C	Hetero	INTERGENIC
SBS	Chr11	24260154	C-T	Hetero	INTERGENIC
SBS	Chr11	27148827	A-T	Hetero	INTERGENIC
SBS	Chr11	27937763	C-T	Hetero	INTERGENIC
SBS	Chr12	4773017	C-T	Hetero	INTERGENIC
SBS	Chr12	5033894	C-T	Hetero	INTERGENIC
SBS	Chr12	6512402	C-T	Hetero	INTRON
SBS	Chr12	6667440	A-G	Homo	INTERGENIC
SBS	Chr12	8092774	G-C	Hetero	INTERGENIC
SBS	Chr12	15732198	C-T	Hetero	INTERGENIC
SBS	Chr12	18623659	C-A	Hetero	INTERGENIC
SBS	Chr12	18623661	C-T	Hetero	INTERGENIC
SBS	Chr12	25351392	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g207400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2492001	2509000	16999	3
Deletion	Chr7	3185917	3185919	2
Deletion	Chr3	4097681	4097682	1
Deletion	Chr3	4256812	4256820	8
Deletion	Chr8	4979658	4979659	1
Deletion	Chr10	13751630	13751632	2
Deletion	Chr10	15139773	15139778	5
Deletion	Chr8	28701495	28701497	2
Deletion	Chr1	32330678	32330684	6
Deletion	Chr1	43967075	43967077	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	33485093	34040771
Inversion	Chr1	33485106	34040771

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes