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Mutant Information

Mutant Name	FN2711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2711-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 75

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9533685 G-T Hetero INTERGENIC
SBS Chr1 13417552 G-A Hetero INTERGENIC
SBS Chr1 28571915 C-G Homo INTRON
SBS Chr1 29739389 G-T Homo INTERGENIC
SBS Chr1 29739396 A-T Homo INTERGENIC
SBS Chr1 33107976 A-G Homo INTRON
SBS Chr1 36521445 C-T Hetero INTERGENIC
SBS Chr1 41230495 A-G Homo INTRON
SBS Chr2 6279611 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 10500085 T-A Hetero INTERGENIC
SBS Chr2 13087161 T-C Hetero INTERGENIC
SBS Chr2 13615304 C-A Hetero INTERGENIC
SBS Chr2 17010006 C-T Hetero INTERGENIC
SBS Chr2 17403965 C-A Hetero INTERGENIC
SBS Chr2 22985902 G-A Homo INTERGENIC
SBS Chr2 28101344 G-T Hetero INTRON
SBS Chr2 29673816 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g299700
SBS Chr2 33612525 C-A Hetero INTERGENIC
SBS Chr3 4327325 G-A Hetero INTERGENIC
SBS Chr3 16552615 C-A Homo INTERGENIC
SBS Chr3 24861984 C-T Hetero INTRON
SBS Chr3 28528064 C-T Hetero INTRON
SBS Chr3 35589142 C-T Hetero INTERGENIC
SBS Chr4 4641907 G-T Hetero INTERGENIC
SBS Chr4 7784778 G-A Hetero INTERGENIC
SBS Chr4 12916953 C-A Hetero INTERGENIC
SBS Chr4 26558730 G-A Hetero INTERGENIC
SBS Chr4 29420507 T-G Hetero INTERGENIC
SBS Chr4 33476018 G-A Hetero INTERGENIC
SBS Chr5 8239823 G-A Hetero INTERGENIC
SBS Chr5 19509131 C-T Hetero INTERGENIC
SBS Chr5 19509133 C-A Hetero INTERGENIC
SBS Chr5 23354471 T-A Hetero INTERGENIC
SBS Chr5 25870579 C-T Hetero INTERGENIC
SBS Chr5 28523231 T-C Hetero INTRON
SBS Chr6 1731959 T-A Homo INTERGENIC
SBS Chr6 10694234 G-C Hetero INTERGENIC
SBS Chr6 14718121 T-A Hetero INTERGENIC
SBS Chr6 16370731 C-T Homo INTERGENIC
SBS Chr7 8245882 G-C Hetero INTERGENIC
SBS Chr7 14306728 C-G Hetero INTERGENIC
SBS Chr7 14306730 G-A Hetero INTERGENIC
SBS Chr7 28854257 T-A Hetero INTERGENIC
SBS Chr8 1090121 C-T Hetero INTERGENIC
SBS Chr8 1136796 C-A Hetero INTERGENIC
SBS Chr8 4479069 A-T Hetero INTERGENIC
SBS Chr8 6304357 C-T Hetero INTERGENIC
SBS Chr8 7684995 C-A Hetero INTERGENIC
SBS Chr8 15556674 G-A Hetero INTERGENIC
SBS Chr8 17618143 C-T Homo INTERGENIC
SBS Chr8 17618144 C-T Homo INTERGENIC
SBS Chr8 18375289 C-T Hetero INTERGENIC
SBS Chr8 23099584 C-T Hetero INTERGENIC
SBS Chr8 25770824 C-A Hetero UTR_3_PRIME
SBS Chr8 28884394 A-T Hetero UTR_3_PRIME
SBS Chr9 3387298 G-A Hetero INTERGENIC
SBS Chr9 5563016 G-A Hetero INTERGENIC
SBS Chr9 12390652 C-T Homo INTERGENIC
SBS Chr10 14570345 A-T Hetero INTERGENIC
SBS Chr10 16073402 G-T Hetero INTERGENIC
SBS Chr10 21679753 G-A Hetero INTERGENIC
SBS Chr10 21935079 T-A Hetero INTRON
SBS Chr11 12998198 C-A Hetero INTERGENIC
SBS Chr11 15909240 T-G Homo INTRON
SBS Chr11 18573226 G-A Hetero INTERGENIC
SBS Chr11 19136828 C-T Hetero INTERGENIC
SBS Chr11 22132026 A-T Hetero INTERGENIC
SBS Chr11 27679064 G-A Hetero INTRON
SBS Chr12 1213121 C-A Hetero STOP_GAINED OsKitaake12g017400
SBS Chr12 6102162 G-A Hetero INTERGENIC
SBS Chr12 12047842 T-C Hetero INTERGENIC
SBS Chr12 13131879 C-A Hetero INTERGENIC
SBS Chr12 16873653 C-G Hetero INTERGENIC
SBS Chr12 18952315 A-C Hetero INTERGENIC
SBS Chr12 24125539 G-T Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1233265 1233271 6 OsKitaake11g014900
Deletion Chr2 8871715 8871717 2
Deletion Chr6 12988680 12988683 3
Deletion Chr3 16805086 16805089 3
Deletion Chr6 17283235 17283243 8 OsKitaake06g161200
Deletion Chr10 19332135 19332141 6
Deletion Chr10 19535859 19535860 1
Deletion Chr1 22422961 22422966 5
Deletion Chr8 23629210 23629231 21
Deletion Chr2 27524967 27524968 1
Deletion Chr1 29867863 29867868 5
Deletion Chr1 32975654 32975660 6
Deletion Chr1 41180249 41180250 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 32383879 32383882 2
Insertion Chr5 10605087 10605090 2
Insertion Chr8 2083695 2083698 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 23163687 24031042 OsKitaake03g256400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9533685	G-T	Hetero	INTERGENIC
SBS	Chr1	13417552	G-A	Hetero	INTERGENIC
SBS	Chr1	28571915	C-G	Homo	INTRON
SBS	Chr1	29739389	G-T	Homo	INTERGENIC
SBS	Chr1	29739396	A-T	Homo	INTERGENIC
SBS	Chr1	33107976	A-G	Homo	INTRON
SBS	Chr1	36521445	C-T	Hetero	INTERGENIC
SBS	Chr1	41230495	A-G	Homo	INTRON
SBS	Chr2	6279611	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	10500085	T-A	Hetero	INTERGENIC
SBS	Chr2	13087161	T-C	Hetero	INTERGENIC
SBS	Chr2	13615304	C-A	Hetero	INTERGENIC
SBS	Chr2	17010006	C-T	Hetero	INTERGENIC
SBS	Chr2	17403965	C-A	Hetero	INTERGENIC
SBS	Chr2	22985902	G-A	Homo	INTERGENIC
SBS	Chr2	28101344	G-T	Hetero	INTRON
SBS	Chr2	29673816	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g299700
SBS	Chr2	33612525	C-A	Hetero	INTERGENIC
SBS	Chr3	4327325	G-A	Hetero	INTERGENIC
SBS	Chr3	16552615	C-A	Homo	INTERGENIC
SBS	Chr3	24861984	C-T	Hetero	INTRON
SBS	Chr3	28528064	C-T	Hetero	INTRON
SBS	Chr3	35589142	C-T	Hetero	INTERGENIC
SBS	Chr4	4641907	G-T	Hetero	INTERGENIC
SBS	Chr4	7784778	G-A	Hetero	INTERGENIC
SBS	Chr4	12916953	C-A	Hetero	INTERGENIC
SBS	Chr4	26558730	G-A	Hetero	INTERGENIC
SBS	Chr4	29420507	T-G	Hetero	INTERGENIC
SBS	Chr4	33476018	G-A	Hetero	INTERGENIC
SBS	Chr5	8239823	G-A	Hetero	INTERGENIC
SBS	Chr5	19509131	C-T	Hetero	INTERGENIC
SBS	Chr5	19509133	C-A	Hetero	INTERGENIC
SBS	Chr5	23354471	T-A	Hetero	INTERGENIC
SBS	Chr5	25870579	C-T	Hetero	INTERGENIC
SBS	Chr5	28523231	T-C	Hetero	INTRON
SBS	Chr6	1731959	T-A	Homo	INTERGENIC
SBS	Chr6	10694234	G-C	Hetero	INTERGENIC
SBS	Chr6	14718121	T-A	Hetero	INTERGENIC
SBS	Chr6	16370731	C-T	Homo	INTERGENIC
SBS	Chr7	8245882	G-C	Hetero	INTERGENIC
SBS	Chr7	14306728	C-G	Hetero	INTERGENIC
SBS	Chr7	14306730	G-A	Hetero	INTERGENIC
SBS	Chr7	28854257	T-A	Hetero	INTERGENIC
SBS	Chr8	1090121	C-T	Hetero	INTERGENIC
SBS	Chr8	1136796	C-A	Hetero	INTERGENIC
SBS	Chr8	4479069	A-T	Hetero	INTERGENIC
SBS	Chr8	6304357	C-T	Hetero	INTERGENIC
SBS	Chr8	7684995	C-A	Hetero	INTERGENIC
SBS	Chr8	15556674	G-A	Hetero	INTERGENIC
SBS	Chr8	17618143	C-T	Homo	INTERGENIC
SBS	Chr8	17618144	C-T	Homo	INTERGENIC
SBS	Chr8	18375289	C-T	Hetero	INTERGENIC
SBS	Chr8	23099584	C-T	Hetero	INTERGENIC
SBS	Chr8	25770824	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	28884394	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	3387298	G-A	Hetero	INTERGENIC
SBS	Chr9	5563016	G-A	Hetero	INTERGENIC
SBS	Chr9	12390652	C-T	Homo	INTERGENIC
SBS	Chr10	14570345	A-T	Hetero	INTERGENIC
SBS	Chr10	16073402	G-T	Hetero	INTERGENIC
SBS	Chr10	21679753	G-A	Hetero	INTERGENIC
SBS	Chr10	21935079	T-A	Hetero	INTRON
SBS	Chr11	12998198	C-A	Hetero	INTERGENIC
SBS	Chr11	15909240	T-G	Homo	INTRON
SBS	Chr11	18573226	G-A	Hetero	INTERGENIC
SBS	Chr11	19136828	C-T	Hetero	INTERGENIC
SBS	Chr11	22132026	A-T	Hetero	INTERGENIC
SBS	Chr11	27679064	G-A	Hetero	INTRON
SBS	Chr12	1213121	C-A	Hetero	STOP_GAINED	OsKitaake12g017400
SBS	Chr12	6102162	G-A	Hetero	INTERGENIC
SBS	Chr12	12047842	T-C	Hetero	INTERGENIC
SBS	Chr12	13131879	C-A	Hetero	INTERGENIC
SBS	Chr12	16873653	C-G	Hetero	INTERGENIC
SBS	Chr12	18952315	A-C	Hetero	INTERGENIC
SBS	Chr12	24125539	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1233265	1233271	6	OsKitaake11g014900
Deletion	Chr2	8871715	8871717	2
Deletion	Chr6	12988680	12988683	3
Deletion	Chr3	16805086	16805089	3
Deletion	Chr6	17283235	17283243	8	OsKitaake06g161200
Deletion	Chr10	19332135	19332141	6
Deletion	Chr10	19535859	19535860	1
Deletion	Chr1	22422961	22422966	5
Deletion	Chr8	23629210	23629231	21
Deletion	Chr2	27524967	27524968	1
Deletion	Chr1	29867863	29867868	5
Deletion	Chr1	32975654	32975660	6
Deletion	Chr1	41180249	41180250	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	23163687	24031042	OsKitaake03g256400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes