Search Kitaake

Mutant Information

Mutant Name	FN2711-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2711-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 638886 G-A Hetero INTERGENIC
SBS Chr1 11539028 C-T Hetero INTERGENIC
SBS Chr1 28571915 C-G Homo INTRON
SBS Chr1 29739389 G-T Homo INTERGENIC
SBS Chr1 29739396 A-T Homo INTERGENIC
SBS Chr1 33107976 A-G Homo INTRON
SBS Chr1 41230495 A-G Homo INTRON
SBS Chr2 10500085 T-A Hetero INTERGENIC
SBS Chr2 13087161 T-C Hetero INTERGENIC
SBS Chr2 13615304 C-A Hetero INTERGENIC
SBS Chr2 22985902 G-A Homo INTERGENIC
SBS Chr2 23095598 A-T Hetero INTERGENIC
SBS Chr2 29673816 G-A Homo NON_SYNONYMOUS_CODING OsKitaake02g299700
SBS Chr3 1983740 G-C Hetero INTRON
SBS Chr3 16552615 C-A Homo INTERGENIC
SBS Chr3 24861984 C-T Hetero INTRON
SBS Chr3 25195586 C-T Hetero INTERGENIC
SBS Chr3 28528064 C-T Hetero INTRON
SBS Chr4 457211 G-T Hetero INTERGENIC
SBS Chr4 4544948 T-A Hetero INTERGENIC
SBS Chr4 6496927 T-C Hetero INTERGENIC
SBS Chr4 12916953 C-A Hetero INTERGENIC
SBS Chr4 17437193 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 29420507 T-G Hetero INTERGENIC
SBS Chr4 29565655 G-A Hetero INTERGENIC
SBS Chr4 33476018 G-A Hetero INTERGENIC
SBS Chr4 34469730 C-A Hetero INTRON
SBS Chr5 8239823 G-A Hetero INTERGENIC
SBS Chr5 11190087 A-T Hetero INTERGENIC
SBS Chr5 11464812 G-A Hetero INTERGENIC
SBS Chr5 13906919 T-C Hetero INTERGENIC
SBS Chr5 21204421 C-A Hetero SYNONYMOUS_CODING
SBS Chr5 23354471 T-A Hetero INTERGENIC
SBS Chr5 25870579 C-T Hetero INTERGENIC
SBS Chr6 1731959 T-A Homo INTERGENIC
SBS Chr6 8137681 C-T Hetero INTERGENIC
SBS Chr6 10694234 G-C Hetero INTERGENIC
SBS Chr6 16370731 C-T Homo INTERGENIC
SBS Chr6 25352606 C-A Hetero INTERGENIC
SBS Chr7 1045724 C-T Hetero INTERGENIC
SBS Chr7 3694453 G-T Hetero INTERGENIC
SBS Chr7 4556788 C-T Homo INTERGENIC
SBS Chr7 12549561 C-A Hetero INTERGENIC
SBS Chr7 17987641 G-A Hetero INTRON
SBS Chr8 4479069 A-T Hetero INTERGENIC
SBS Chr8 4863620 G-T Hetero INTERGENIC
SBS Chr8 6304357 C-T Hetero INTERGENIC
SBS Chr8 7684995 C-A Hetero INTERGENIC
SBS Chr8 14917507 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g117000
SBS Chr8 17618143 C-T Homo INTERGENIC
SBS Chr8 17618144 C-T Homo INTERGENIC
SBS Chr8 18375289 C-T Hetero INTERGENIC
SBS Chr8 20156429 G-A Hetero INTERGENIC
SBS Chr8 21604653 G-A Hetero INTERGENIC
SBS Chr8 23099584 C-T Hetero INTERGENIC
SBS Chr8 27949681 C-T Hetero INTERGENIC
SBS Chr9 12390652 C-T Homo INTERGENIC
SBS Chr11 15909240 T-G Homo INTRON
SBS Chr11 18573226 G-A Hetero INTERGENIC
SBS Chr11 25931910 G-A Hetero INTERGENIC
SBS Chr11 27679064 G-A Hetero INTRON
SBS Chr12 4619429 A-G Hetero INTERGENIC
SBS Chr12 6958399 C-A Hetero INTERGENIC
SBS Chr12 7085742 G-C Hetero INTERGENIC
SBS Chr12 9446963 T-A Hetero INTERGENIC
SBS Chr12 11828340 A-G Hetero INTERGENIC
SBS Chr12 18952315 A-C Hetero INTERGENIC
SBS Chr12 26069313 C-T Hetero INTRON

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 8871715 8871717 2
Deletion Chr6 12988680 12988683 3
Deletion Chr3 16805086 16805089 3
Deletion Chr6 17283235 17283243 8 OsKitaake06g161200
Deletion Chr4 17300223 17300232 9
Deletion Chr10 19332135 19332141 6
Deletion Chr10 19535859 19535860 1
Deletion Chr12 22330996 22331002 6
Deletion Chr1 22422961 22422966 5
Deletion Chr8 23629210 23629231 21
Deletion Chr2 27524967 27524968 1
Deletion Chr3 29099107 29099114 7
Deletion Chr1 29867863 29867868 5
Deletion Chr1 32975654 32975660 6
Deletion Chr1 41180249 41180250 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13132394 13132398 3
Insertion Chr9 13441423 13441426 2
Insertion Chr9 22280623 22280626 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 23163687 24031042 OsKitaake03g256400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	638886	G-A	Hetero	INTERGENIC
SBS	Chr1	11539028	C-T	Hetero	INTERGENIC
SBS	Chr1	28571915	C-G	Homo	INTRON
SBS	Chr1	29739389	G-T	Homo	INTERGENIC
SBS	Chr1	29739396	A-T	Homo	INTERGENIC
SBS	Chr1	33107976	A-G	Homo	INTRON
SBS	Chr1	41230495	A-G	Homo	INTRON
SBS	Chr2	10500085	T-A	Hetero	INTERGENIC
SBS	Chr2	13087161	T-C	Hetero	INTERGENIC
SBS	Chr2	13615304	C-A	Hetero	INTERGENIC
SBS	Chr2	22985902	G-A	Homo	INTERGENIC
SBS	Chr2	23095598	A-T	Hetero	INTERGENIC
SBS	Chr2	29673816	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g299700
SBS	Chr3	1983740	G-C	Hetero	INTRON
SBS	Chr3	16552615	C-A	Homo	INTERGENIC
SBS	Chr3	24861984	C-T	Hetero	INTRON
SBS	Chr3	25195586	C-T	Hetero	INTERGENIC
SBS	Chr3	28528064	C-T	Hetero	INTRON
SBS	Chr4	457211	G-T	Hetero	INTERGENIC
SBS	Chr4	4544948	T-A	Hetero	INTERGENIC
SBS	Chr4	6496927	T-C	Hetero	INTERGENIC
SBS	Chr4	12916953	C-A	Hetero	INTERGENIC
SBS	Chr4	17437193	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	29420507	T-G	Hetero	INTERGENIC
SBS	Chr4	29565655	G-A	Hetero	INTERGENIC
SBS	Chr4	33476018	G-A	Hetero	INTERGENIC
SBS	Chr4	34469730	C-A	Hetero	INTRON
SBS	Chr5	8239823	G-A	Hetero	INTERGENIC
SBS	Chr5	11190087	A-T	Hetero	INTERGENIC
SBS	Chr5	11464812	G-A	Hetero	INTERGENIC
SBS	Chr5	13906919	T-C	Hetero	INTERGENIC
SBS	Chr5	21204421	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23354471	T-A	Hetero	INTERGENIC
SBS	Chr5	25870579	C-T	Hetero	INTERGENIC
SBS	Chr6	1731959	T-A	Homo	INTERGENIC
SBS	Chr6	8137681	C-T	Hetero	INTERGENIC
SBS	Chr6	10694234	G-C	Hetero	INTERGENIC
SBS	Chr6	16370731	C-T	Homo	INTERGENIC
SBS	Chr6	25352606	C-A	Hetero	INTERGENIC
SBS	Chr7	1045724	C-T	Hetero	INTERGENIC
SBS	Chr7	3694453	G-T	Hetero	INTERGENIC
SBS	Chr7	4556788	C-T	Homo	INTERGENIC
SBS	Chr7	12549561	C-A	Hetero	INTERGENIC
SBS	Chr7	17987641	G-A	Hetero	INTRON
SBS	Chr8	4479069	A-T	Hetero	INTERGENIC
SBS	Chr8	4863620	G-T	Hetero	INTERGENIC
SBS	Chr8	6304357	C-T	Hetero	INTERGENIC
SBS	Chr8	7684995	C-A	Hetero	INTERGENIC
SBS	Chr8	14917507	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g117000
SBS	Chr8	17618143	C-T	Homo	INTERGENIC
SBS	Chr8	17618144	C-T	Homo	INTERGENIC
SBS	Chr8	18375289	C-T	Hetero	INTERGENIC
SBS	Chr8	20156429	G-A	Hetero	INTERGENIC
SBS	Chr8	21604653	G-A	Hetero	INTERGENIC
SBS	Chr8	23099584	C-T	Hetero	INTERGENIC
SBS	Chr8	27949681	C-T	Hetero	INTERGENIC
SBS	Chr9	12390652	C-T	Homo	INTERGENIC
SBS	Chr11	15909240	T-G	Homo	INTRON
SBS	Chr11	18573226	G-A	Hetero	INTERGENIC
SBS	Chr11	25931910	G-A	Hetero	INTERGENIC
SBS	Chr11	27679064	G-A	Hetero	INTRON
SBS	Chr12	4619429	A-G	Hetero	INTERGENIC
SBS	Chr12	6958399	C-A	Hetero	INTERGENIC
SBS	Chr12	7085742	G-C	Hetero	INTERGENIC
SBS	Chr12	9446963	T-A	Hetero	INTERGENIC
SBS	Chr12	11828340	A-G	Hetero	INTERGENIC
SBS	Chr12	18952315	A-C	Hetero	INTERGENIC
SBS	Chr12	26069313	C-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	8871715	8871717	2
Deletion	Chr6	12988680	12988683	3
Deletion	Chr3	16805086	16805089	3
Deletion	Chr6	17283235	17283243	8	OsKitaake06g161200
Deletion	Chr4	17300223	17300232	9
Deletion	Chr10	19332135	19332141	6
Deletion	Chr10	19535859	19535860	1
Deletion	Chr12	22330996	22331002	6
Deletion	Chr1	22422961	22422966	5
Deletion	Chr8	23629210	23629231	21
Deletion	Chr2	27524967	27524968	1
Deletion	Chr3	29099107	29099114	7
Deletion	Chr1	29867863	29867868	5
Deletion	Chr1	32975654	32975660	6
Deletion	Chr1	41180249	41180250	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	23163687	24031042	OsKitaake03g256400

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes