Search Kitaake

Mutant Information

Mutant Name	FN2713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2713-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2006064 C-T Homo INTERGENIC
SBS Chr1 17108374 A-G Hetero INTERGENIC
SBS Chr1 23027326 T-A Hetero INTERGENIC
SBS Chr1 28919284 A-T Homo INTERGENIC
SBS Chr1 36670688 A-G Hetero INTERGENIC
SBS Chr1 38751442 T-A Hetero INTRON
SBS Chr2 5040481 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g070000
SBS Chr2 6854368 T-C Hetero INTERGENIC
SBS Chr2 11793357 C-G Hetero INTERGENIC
SBS Chr2 13011144 C-T Hetero INTERGENIC
SBS Chr2 22081344 A-G Hetero INTERGENIC
SBS Chr2 33043031 G-T Hetero INTERGENIC
SBS Chr3 3172041 T-A Hetero INTERGENIC
SBS Chr3 6297141 G-A Hetero INTERGENIC
SBS Chr3 8875677 T-A Hetero INTERGENIC
SBS Chr3 16373999 T-C Hetero INTERGENIC
SBS Chr3 22721886 A-T Hetero INTRON
SBS Chr3 22724265 G-C Hetero INTERGENIC
SBS Chr3 23683240 T-G Hetero INTERGENIC
SBS Chr3 28762451 G-A Hetero INTERGENIC
SBS Chr4 14960996 C-G Homo INTERGENIC
SBS Chr4 15279125 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g073300
SBS Chr4 24508794 A-T Homo INTERGENIC
SBS Chr5 30263342 A-G Hetero INTERGENIC
SBS Chr6 22996214 G-A Homo INTERGENIC
SBS Chr6 28986127 G-A Hetero INTERGENIC
SBS Chr6 29919014 C-A Hetero INTRON
SBS Chr7 22388882 G-C Homo NON_SYNONYMOUS_CODING OsKitaake07g189900
SBS Chr8 184652 G-T Hetero INTERGENIC
SBS Chr8 4518488 C-T Homo INTRON
SBS Chr8 13428281 C-T Hetero INTRON
SBS Chr8 13443634 T-C Hetero INTERGENIC
SBS Chr8 17666489 G-T Homo INTERGENIC
SBS Chr8 24983551 C-G Homo INTERGENIC
SBS Chr8 25156531 G-A Hetero INTERGENIC
SBS Chr8 26439793 G-A Hetero INTERGENIC
SBS Chr10 17798225 C-T Homo INTERGENIC
SBS Chr11 1035949 A-G Homo INTERGENIC
SBS Chr11 6965752 G-A Hetero INTERGENIC
SBS Chr11 19724265 T-A Hetero INTERGENIC
SBS Chr11 19724266 C-A Hetero INTERGENIC
SBS Chr11 23601074 G-A Hetero INTERGENIC
SBS Chr11 23876489 C-A Hetero INTERGENIC
SBS Chr11 27473351 G-T Homo INTERGENIC
SBS Chr12 5649219 A-T Hetero INTERGENIC
SBS Chr12 17254162 T-C Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 294444 294445 1
Deletion Chr1 1247873 1247879 6
Deletion Chr10 3988704 3988705 1
Deletion Chr6 4879266 4879280 14
Deletion Chr9 6955159 6955167 8
Deletion Chr6 14665132 14665142 10
Deletion Chr1 15230807 15230810 3
Deletion Chr10 17365045 17365046 1
Deletion Chr5 18507821 18507822 1
Deletion Chr11 19794727 19794728 1 OsKitaake11g154800
Deletion Chr8 21687420 21687422 2
Deletion Chr7 22518545 22518547 2
Deletion Chr3 22724190 22724191 1
Deletion Chr3 23740301 23740303 2
Deletion Chr3 23884434 23884436 2
Deletion Chr11 24569067 24569078 11
Deletion Chr8 25673001 25829000 155999 19
Deletion Chr8 28736316 28736320 4 OsKitaake08g246700
Deletion Chr1 31406375 31406376 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 2804376 2804379 2
Insertion Chr12 14104305 14104323 17
Insertion Chr3 19362193 19362195 1

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 98691 425722 2
Inversion Chr4 98703 430950 2
Inversion Chr8 24770640 25666481
Inversion Chr8 24770644 25662655
Inversion Chr3 28665524 29268606 OsKitaake03g304900
Inversion Chr3 28665530 29268611 OsKitaake03g304900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 425735 Chr3 2258116 OsKitaake04g003000
Translocation Chr4 430903 Chr3 2258129 OsKitaake04g003000
Translocation Chr11 25467912 Chr9 14356929

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2006064	C-T	Homo	INTERGENIC
SBS	Chr1	17108374	A-G	Hetero	INTERGENIC
SBS	Chr1	23027326	T-A	Hetero	INTERGENIC
SBS	Chr1	28919284	A-T	Homo	INTERGENIC
SBS	Chr1	36670688	A-G	Hetero	INTERGENIC
SBS	Chr1	38751442	T-A	Hetero	INTRON
SBS	Chr2	5040481	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g070000
SBS	Chr2	6854368	T-C	Hetero	INTERGENIC
SBS	Chr2	11793357	C-G	Hetero	INTERGENIC
SBS	Chr2	13011144	C-T	Hetero	INTERGENIC
SBS	Chr2	22081344	A-G	Hetero	INTERGENIC
SBS	Chr2	33043031	G-T	Hetero	INTERGENIC
SBS	Chr3	3172041	T-A	Hetero	INTERGENIC
SBS	Chr3	6297141	G-A	Hetero	INTERGENIC
SBS	Chr3	8875677	T-A	Hetero	INTERGENIC
SBS	Chr3	16373999	T-C	Hetero	INTERGENIC
SBS	Chr3	22721886	A-T	Hetero	INTRON
SBS	Chr3	22724265	G-C	Hetero	INTERGENIC
SBS	Chr3	23683240	T-G	Hetero	INTERGENIC
SBS	Chr3	28762451	G-A	Hetero	INTERGENIC
SBS	Chr4	14960996	C-G	Homo	INTERGENIC
SBS	Chr4	15279125	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g073300
SBS	Chr4	24508794	A-T	Homo	INTERGENIC
SBS	Chr5	30263342	A-G	Hetero	INTERGENIC
SBS	Chr6	22996214	G-A	Homo	INTERGENIC
SBS	Chr6	28986127	G-A	Hetero	INTERGENIC
SBS	Chr6	29919014	C-A	Hetero	INTRON
SBS	Chr7	22388882	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g189900
SBS	Chr8	184652	G-T	Hetero	INTERGENIC
SBS	Chr8	4518488	C-T	Homo	INTRON
SBS	Chr8	13428281	C-T	Hetero	INTRON
SBS	Chr8	13443634	T-C	Hetero	INTERGENIC
SBS	Chr8	17666489	G-T	Homo	INTERGENIC
SBS	Chr8	24983551	C-G	Homo	INTERGENIC
SBS	Chr8	25156531	G-A	Hetero	INTERGENIC
SBS	Chr8	26439793	G-A	Hetero	INTERGENIC
SBS	Chr10	17798225	C-T	Homo	INTERGENIC
SBS	Chr11	1035949	A-G	Homo	INTERGENIC
SBS	Chr11	6965752	G-A	Hetero	INTERGENIC
SBS	Chr11	19724265	T-A	Hetero	INTERGENIC
SBS	Chr11	19724266	C-A	Hetero	INTERGENIC
SBS	Chr11	23601074	G-A	Hetero	INTERGENIC
SBS	Chr11	23876489	C-A	Hetero	INTERGENIC
SBS	Chr11	27473351	G-T	Homo	INTERGENIC
SBS	Chr12	5649219	A-T	Hetero	INTERGENIC
SBS	Chr12	17254162	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	294444	294445	1
Deletion	Chr1	1247873	1247879	6
Deletion	Chr10	3988704	3988705	1
Deletion	Chr6	4879266	4879280	14
Deletion	Chr9	6955159	6955167	8
Deletion	Chr6	14665132	14665142	10
Deletion	Chr1	15230807	15230810	3
Deletion	Chr10	17365045	17365046	1
Deletion	Chr5	18507821	18507822	1
Deletion	Chr11	19794727	19794728	1	OsKitaake11g154800
Deletion	Chr8	21687420	21687422	2
Deletion	Chr7	22518545	22518547	2
Deletion	Chr3	22724190	22724191	1
Deletion	Chr3	23740301	23740303	2
Deletion	Chr3	23884434	23884436	2
Deletion	Chr11	24569067	24569078	11
Deletion	Chr8	25673001	25829000	155999	19
Deletion	Chr8	28736316	28736320	4	OsKitaake08g246700
Deletion	Chr1	31406375	31406376	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	98691	425722	2
Inversion	Chr4	98703	430950	2
Inversion	Chr8	24770640	25666481
Inversion	Chr8	24770644	25662655
Inversion	Chr3	28665524	29268606	OsKitaake03g304900
Inversion	Chr3	28665530	29268611	OsKitaake03g304900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes