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Mutant Information

Mutant Name	FN2714-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2714-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11739794 C-G Homo INTERGENIC
SBS Chr1 27549667 G-T Hetero INTERGENIC
SBS Chr1 35398939 C-T Hetero INTERGENIC
SBS Chr1 43148548 C-T Hetero INTERGENIC
SBS Chr1 43524012 G-A Homo INTRON
SBS Chr2 10805988 C-G Hetero INTERGENIC
SBS Chr2 14452496 G-A Hetero INTERGENIC
SBS Chr2 20931818 G-A Hetero INTRON
SBS Chr2 21315271 T-C Hetero INTERGENIC
SBS Chr2 22858455 G-C Hetero INTRON
SBS Chr2 34268114 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g356100
SBS Chr3 11063928 G-A Hetero INTERGENIC
SBS Chr3 15255813 C-T Hetero INTERGENIC
SBS Chr3 16524699 C-T Hetero INTERGENIC
SBS Chr3 19319515 G-A Homo INTERGENIC
SBS Chr3 29178250 G-C Hetero INTERGENIC
SBS Chr3 31545950 C-G Hetero INTERGENIC
SBS Chr3 33540264 C-T Hetero INTERGENIC
SBS Chr4 1587634 A-C Hetero INTERGENIC
SBS Chr4 7448097 A-T Homo INTERGENIC
SBS Chr4 9502230 G-C Hetero INTERGENIC
SBS Chr4 12483611 C-T Hetero INTERGENIC
SBS Chr4 12483615 T-G Hetero INTERGENIC
SBS Chr4 15764827 C-T Homo INTERGENIC
SBS Chr4 23011317 C-T Hetero INTERGENIC
SBS Chr4 24430996 T-G Hetero INTERGENIC
SBS Chr4 25563414 A-G Hetero INTRON
SBS Chr4 29032572 G-A Hetero INTERGENIC
SBS Chr5 8955260 T-C Hetero INTERGENIC
SBS Chr5 25881146 C-T Hetero INTERGENIC
SBS Chr6 1028946 T-C Homo INTERGENIC
SBS Chr6 2606395 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g035500
SBS Chr6 11357829 T-G Hetero INTERGENIC
SBS Chr6 15619490 G-A Hetero INTERGENIC
SBS Chr6 25715769 C-G Homo INTRON
SBS Chr7 26836546 A-C Hetero INTERGENIC
SBS Chr7 27175304 G-A Hetero INTERGENIC
SBS Chr7 27175305 G-A Hetero INTERGENIC
SBS Chr8 2587018 G-T Hetero INTERGENIC
SBS Chr8 8524931 C-A Homo INTERGENIC
SBS Chr8 15985045 C-T Hetero INTERGENIC
SBS Chr9 10422930 A-G Homo UTR_5_PRIME
SBS Chr10 5401848 A-G Hetero INTERGENIC
SBS Chr10 22708976 G-A Hetero INTERGENIC
SBS Chr11 866527 G-A Hetero INTERGENIC
SBS Chr11 12154837 C-T Hetero INTERGENIC
SBS Chr11 12735929 G-A Hetero INTERGENIC
SBS Chr11 13396390 G-A Hetero INTERGENIC
SBS Chr12 15833618 C-G Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 2534779 2534781 2
Deletion Chr8 4321811 4321813 2
Deletion Chr9 6108398 6108404 6
Deletion Chr12 10328415 10328417 2
Deletion Chr9 10609622 10609634 12
Deletion Chr4 11447807 11447808 1
Deletion Chr5 13954046 13954050 4
Deletion Chr3 16734542 16734544 2
Deletion Chr11 18446001 18454000 7999
Deletion Chr11 20649001 20674000 24999 4
Deletion Chr7 21692780 21692794 14
Deletion Chr3 24783001 24803000 19999
Deletion Chr4 26470338 26470340 2
Deletion Chr8 28104373 28104393 20
Deletion Chr2 33610311 33610315 4

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25825551 25825554 2
Insertion Chr5 25093022 25093026 3
Insertion Chr7 9217540 9217543 2
Insertion Chr7 28962925 28962930 4
Insertion Chr1 6413509 6413512 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 19489415 19763412
Inversion Chr11 19645030 19661758
Inversion Chr11 19763403 19782166

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5853625 Chr1 32723822 2
Translocation Chr11 5853675 Chr1 32722532 OsKitaake11g071400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11739794	C-G	Homo	INTERGENIC
SBS	Chr1	27549667	G-T	Hetero	INTERGENIC
SBS	Chr1	35398939	C-T	Hetero	INTERGENIC
SBS	Chr1	43148548	C-T	Hetero	INTERGENIC
SBS	Chr1	43524012	G-A	Homo	INTRON
SBS	Chr2	10805988	C-G	Hetero	INTERGENIC
SBS	Chr2	14452496	G-A	Hetero	INTERGENIC
SBS	Chr2	20931818	G-A	Hetero	INTRON
SBS	Chr2	21315271	T-C	Hetero	INTERGENIC
SBS	Chr2	22858455	G-C	Hetero	INTRON
SBS	Chr2	34268114	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g356100
SBS	Chr3	11063928	G-A	Hetero	INTERGENIC
SBS	Chr3	15255813	C-T	Hetero	INTERGENIC
SBS	Chr3	16524699	C-T	Hetero	INTERGENIC
SBS	Chr3	19319515	G-A	Homo	INTERGENIC
SBS	Chr3	29178250	G-C	Hetero	INTERGENIC
SBS	Chr3	31545950	C-G	Hetero	INTERGENIC
SBS	Chr3	33540264	C-T	Hetero	INTERGENIC
SBS	Chr4	1587634	A-C	Hetero	INTERGENIC
SBS	Chr4	7448097	A-T	Homo	INTERGENIC
SBS	Chr4	9502230	G-C	Hetero	INTERGENIC
SBS	Chr4	12483611	C-T	Hetero	INTERGENIC
SBS	Chr4	12483615	T-G	Hetero	INTERGENIC
SBS	Chr4	15764827	C-T	Homo	INTERGENIC
SBS	Chr4	23011317	C-T	Hetero	INTERGENIC
SBS	Chr4	24430996	T-G	Hetero	INTERGENIC
SBS	Chr4	25563414	A-G	Hetero	INTRON
SBS	Chr4	29032572	G-A	Hetero	INTERGENIC
SBS	Chr5	8955260	T-C	Hetero	INTERGENIC
SBS	Chr5	25881146	C-T	Hetero	INTERGENIC
SBS	Chr6	1028946	T-C	Homo	INTERGENIC
SBS	Chr6	2606395	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g035500
SBS	Chr6	11357829	T-G	Hetero	INTERGENIC
SBS	Chr6	15619490	G-A	Hetero	INTERGENIC
SBS	Chr6	25715769	C-G	Homo	INTRON
SBS	Chr7	26836546	A-C	Hetero	INTERGENIC
SBS	Chr7	27175304	G-A	Hetero	INTERGENIC
SBS	Chr7	27175305	G-A	Hetero	INTERGENIC
SBS	Chr8	2587018	G-T	Hetero	INTERGENIC
SBS	Chr8	8524931	C-A	Homo	INTERGENIC
SBS	Chr8	15985045	C-T	Hetero	INTERGENIC
SBS	Chr9	10422930	A-G	Homo	UTR_5_PRIME
SBS	Chr10	5401848	A-G	Hetero	INTERGENIC
SBS	Chr10	22708976	G-A	Hetero	INTERGENIC
SBS	Chr11	866527	G-A	Hetero	INTERGENIC
SBS	Chr11	12154837	C-T	Hetero	INTERGENIC
SBS	Chr11	12735929	G-A	Hetero	INTERGENIC
SBS	Chr11	13396390	G-A	Hetero	INTERGENIC
SBS	Chr12	15833618	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	2534779	2534781	2
Deletion	Chr8	4321811	4321813	2
Deletion	Chr9	6108398	6108404	6
Deletion	Chr12	10328415	10328417	2
Deletion	Chr9	10609622	10609634	12
Deletion	Chr4	11447807	11447808	1
Deletion	Chr5	13954046	13954050	4
Deletion	Chr3	16734542	16734544	2
Deletion	Chr11	18446001	18454000	7999
Deletion	Chr11	20649001	20674000	24999	4
Deletion	Chr7	21692780	21692794	14
Deletion	Chr3	24783001	24803000	19999
Deletion	Chr4	26470338	26470340	2
Deletion	Chr8	28104373	28104393	20
Deletion	Chr2	33610311	33610315	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19489415	19763412
Inversion	Chr11	19645030	19661758
Inversion	Chr11	19763403	19782166

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes