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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN2715-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2715-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 122

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7945539 C-A Hetero INTERGENIC
SBS Chr1 16791224 A-T Hetero INTERGENIC
SBS Chr1 21317906 C-T Homo INTERGENIC
SBS Chr1 25272532 A-G Hetero INTERGENIC
SBS Chr1 29770018 C-T Hetero INTERGENIC
SBS Chr1 37578962 C-T Hetero INTERGENIC
SBS Chr1 42219754 G-A Hetero INTERGENIC
SBS Chr2 1004258 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g014401
SBS Chr2 1134251 C-G Hetero INTRON
SBS Chr2 15939516 C-T Hetero INTERGENIC
SBS Chr2 17865326 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g178500
SBS Chr2 33002860 G-A Hetero INTERGENIC
SBS Chr3 785960 T-G Hetero INTRON
SBS Chr3 13035757 C-A Hetero INTERGENIC
SBS Chr3 16798537 T-G Hetero INTERGENIC
SBS Chr3 36346534 T-C Hetero INTRON
SBS Chr3 36838242 G-T Hetero INTERGENIC
SBS Chr3 36838255 T-A Hetero INTERGENIC
SBS Chr4 2680743 G-C Hetero INTERGENIC
SBS Chr4 3798960 A-C Homo INTRON
SBS Chr4 10354025 A-C Hetero INTERGENIC
SBS Chr4 14556797 G-A Hetero INTERGENIC
SBS Chr4 17653832 C-A Hetero INTERGENIC
SBS Chr4 20807742 G-A Hetero INTERGENIC
SBS Chr4 24679657 G-A Hetero INTERGENIC
SBS Chr4 34739708 G-A Hetero INTERGENIC
SBS Chr4 35937339 T-C Hetero INTRON
SBS Chr5 4698494 C-T Homo INTERGENIC
SBS Chr5 17881763 G-A Hetero INTRON
SBS Chr5 21545449 A-G Hetero INTERGENIC
SBS Chr5 22494875 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 29933749 C-T Hetero INTERGENIC
SBS Chr6 16255921 C-T Hetero INTERGENIC
SBS Chr6 17417374 C-T Hetero INTERGENIC
SBS Chr7 573592 A-T Hetero INTERGENIC
SBS Chr7 4112983 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g052300
SBS Chr7 4903531 G-T Hetero INTERGENIC
SBS Chr8 18656036 G-A Hetero INTERGENIC
SBS Chr9 212430 T-G Homo INTRON
SBS Chr9 1610525 G-T Homo INTRON
SBS Chr9 18552359 A-T Hetero INTERGENIC
SBS Chr9 21738471 G-A Hetero UTR_3_PRIME
SBS Chr10 147401 C-A Hetero INTERGENIC
SBS Chr10 676671 C-T Hetero INTERGENIC
SBS Chr10 1359859 G-A Homo INTERGENIC
SBS Chr10 4054950 A-G Hetero INTERGENIC
SBS Chr10 10209089 C-T Hetero INTERGENIC
SBS Chr10 10389910 T-C Hetero INTERGENIC
SBS Chr10 21287245 G-C Hetero SYNONYMOUS_CODING
SBS Chr11 710669 A-G Hetero INTERGENIC
SBS Chr11 3102227 C-T Hetero INTERGENIC
SBS Chr11 8776266 C-T Homo INTERGENIC
SBS Chr11 24428674 G-A Hetero INTERGENIC
SBS Chr11 28135890 C-A Homo INTERGENIC
SBS Chr11 28842178 C-G Hetero SYNONYMOUS_CODING
SBS Chr11 28871810 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g236400
SBS Chr1 1151010 C-T Hetero INTERGENIC
SBS Chr1 8984381 C-A Hetero INTERGENIC
SBS Chr1 16791224 A-T Hetero INTERGENIC
SBS Chr1 18352528 G-T Hetero INTERGENIC
SBS Chr1 21317906 C-T Homo INTERGENIC
SBS Chr1 37578962 C-T Hetero INTERGENIC
SBS Chr1 42219754 G-A Hetero INTERGENIC
SBS Chr2 8843568 G-T Hetero INTERGENIC
SBS Chr2 15939516 C-T Hetero INTERGENIC
SBS Chr2 16171430 G-T Hetero INTERGENIC
SBS Chr2 17865326 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g178500
SBS Chr2 26845852 T-A Hetero INTERGENIC
SBS Chr2 31039092 C-A Hetero INTERGENIC
SBS Chr2 31777304 G-T Hetero INTERGENIC
SBS Chr2 33002860 G-A Hetero INTERGENIC
SBS Chr3 785960 T-G Hetero INTRON
SBS Chr3 16798537 T-G Hetero INTERGENIC
SBS Chr3 17112332 A-T Hetero INTERGENIC
SBS Chr3 24817741 T-C Hetero INTERGENIC
SBS Chr3 36346534 T-C Hetero INTRON
SBS Chr3 36838242 G-T Hetero INTERGENIC
SBS Chr3 36838255 T-A Hetero INTERGENIC
SBS Chr4 1405622 C-T Hetero INTERGENIC
SBS Chr4 3798960 A-C Homo INTRON
SBS Chr4 10354025 A-C Hetero INTERGENIC
SBS Chr4 15350715 T-C Hetero INTERGENIC
SBS Chr4 20807742 G-A Hetero INTERGENIC
SBS Chr4 24948471 G-T Hetero INTRON
SBS Chr4 32351580 A-G Hetero INTERGENIC
SBS Chr5 4698494 C-T Homo INTERGENIC
SBS Chr5 12422022 G-A Hetero INTERGENIC
SBS Chr5 22494875 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 26751399 A-T Hetero INTERGENIC
SBS Chr5 29933749 C-T Hetero INTERGENIC
SBS Chr6 6298425 G-A Hetero INTERGENIC
SBS Chr6 12605951 T-A Hetero INTRON
SBS Chr6 16255921 C-T Hetero INTERGENIC
SBS Chr6 30483070 T-C Homo INTERGENIC
SBS Chr7 573592 A-T Hetero INTERGENIC
SBS Chr7 1728004 G-A Hetero INTERGENIC
SBS Chr7 4903531 G-T Hetero INTERGENIC
SBS Chr7 14688989 T-A Hetero INTERGENIC
SBS Chr7 15384166 A-G Hetero INTERGENIC
SBS Chr7 18399408 C-T Hetero UTR_5_PRIME
SBS Chr7 25974587 C-T Hetero INTERGENIC
SBS Chr8 927591 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g012200
SBS Chr8 2829120 C-T Hetero INTERGENIC
SBS Chr8 16672143 A-T Hetero INTERGENIC
SBS Chr8 17456182 T-C Hetero INTERGENIC
SBS Chr8 17587540 A-T Hetero INTERGENIC
SBS Chr8 18656036 G-A Hetero INTERGENIC
SBS Chr8 22008953 G-A Hetero INTERGENIC
SBS Chr8 23940700 G-T Hetero INTERGENIC
SBS Chr9 212430 T-G Homo INTRON
SBS Chr9 1610525 G-T Homo INTRON
SBS Chr9 13816835 T-A Hetero INTERGENIC
SBS Chr9 18552359 A-T Hetero INTERGENIC
SBS Chr10 1359859 G-A Homo INTERGENIC
SBS Chr10 10389910 T-C Hetero INTERGENIC
SBS Chr10 21287245 G-C Hetero SYNONYMOUS_CODING
SBS Chr11 413084 C-T Hetero INTERGENIC
SBS Chr11 8776266 C-T Homo INTERGENIC
SBS Chr11 28135890 C-A Homo INTERGENIC
SBS Chr11 28871810 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g236400
SBS Chr12 17853267 G-T Hetero INTERGENIC
SBS Chr12 26608696 A-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 687001 811000 123999 25
Deletion Chr12 688001 810000 121999 24
Deletion Chr10 3618492 3618493 1
Deletion Chr5 4309539 4309546 7 2
Deletion Chr8 6476458 6476459 1 2
Deletion Chr7 9280653 9280654 1
Deletion Chr7 10312104 10312106 2 2
Deletion Chr6 13585458 13585459 1 OsKitaake06g142450
Deletion Chr7 13724001 13728000 3999
Deletion Chr6 13753022 13753024 2 2
Deletion Chr2 15836467 15836477 10 2
Deletion Chr4 16974264 16974265 1
Deletion Chr4 19703955 19703956 1
Deletion Chr7 20549589 20549591 2 2
Deletion Chr5 22731742 22731743 1
Deletion Chr1 24964343 24964344 1 2
Deletion Chr2 28041001 28097000 55999 5
Deletion Chr2 28047001 28091000 43999 4
Deletion Chr5 28055218 28055223 5
Deletion Chr2 28381001 28404000 22999 OsKitaake02g285700
Deletion Chr2 28382001 28406000 23999 OsKitaake02g285700
Deletion Chr11 28871001 29251000 379999 34
Deletion Chr11 28872001 29250000 377999 34
Deletion Chr2 29681018 29681019 1
Deletion Chr3 29965754 29965756 2
Deletion Chr4 30265010 30265021 11

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 13150477 13150482 4
Insertion Chr6 6569154 6569157 2
Insertion Chr9 9861134 9861138 3
Insertion Chr10 630253 630256 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 622274 690714 2
Inversion Chr12 622295 810722 OsKitaake12g008000

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 810052 Chr7 13381144
Translocation Chr12 810719 Chr7 13381854

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7945539	C-A	Hetero	INTERGENIC
SBS	Chr1	16791224	A-T	Hetero	INTERGENIC
SBS	Chr1	21317906	C-T	Homo	INTERGENIC
SBS	Chr1	25272532	A-G	Hetero	INTERGENIC
SBS	Chr1	29770018	C-T	Hetero	INTERGENIC
SBS	Chr1	37578962	C-T	Hetero	INTERGENIC
SBS	Chr1	42219754	G-A	Hetero	INTERGENIC
SBS	Chr2	1004258	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g014401
SBS	Chr2	1134251	C-G	Hetero	INTRON
SBS	Chr2	15939516	C-T	Hetero	INTERGENIC
SBS	Chr2	17865326	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g178500
SBS	Chr2	33002860	G-A	Hetero	INTERGENIC
SBS	Chr3	785960	T-G	Hetero	INTRON
SBS	Chr3	13035757	C-A	Hetero	INTERGENIC
SBS	Chr3	16798537	T-G	Hetero	INTERGENIC
SBS	Chr3	36346534	T-C	Hetero	INTRON
SBS	Chr3	36838242	G-T	Hetero	INTERGENIC
SBS	Chr3	36838255	T-A	Hetero	INTERGENIC
SBS	Chr4	2680743	G-C	Hetero	INTERGENIC
SBS	Chr4	3798960	A-C	Homo	INTRON
SBS	Chr4	10354025	A-C	Hetero	INTERGENIC
SBS	Chr4	14556797	G-A	Hetero	INTERGENIC
SBS	Chr4	17653832	C-A	Hetero	INTERGENIC
SBS	Chr4	20807742	G-A	Hetero	INTERGENIC
SBS	Chr4	24679657	G-A	Hetero	INTERGENIC
SBS	Chr4	34739708	G-A	Hetero	INTERGENIC
SBS	Chr4	35937339	T-C	Hetero	INTRON
SBS	Chr5	4698494	C-T	Homo	INTERGENIC
SBS	Chr5	17881763	G-A	Hetero	INTRON
SBS	Chr5	21545449	A-G	Hetero	INTERGENIC
SBS	Chr5	22494875	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	29933749	C-T	Hetero	INTERGENIC
SBS	Chr6	16255921	C-T	Hetero	INTERGENIC
SBS	Chr6	17417374	C-T	Hetero	INTERGENIC
SBS	Chr7	573592	A-T	Hetero	INTERGENIC
SBS	Chr7	4112983	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g052300
SBS	Chr7	4903531	G-T	Hetero	INTERGENIC
SBS	Chr8	18656036	G-A	Hetero	INTERGENIC
SBS	Chr9	212430	T-G	Homo	INTRON
SBS	Chr9	1610525	G-T	Homo	INTRON
SBS	Chr9	18552359	A-T	Hetero	INTERGENIC
SBS	Chr9	21738471	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	147401	C-A	Hetero	INTERGENIC
SBS	Chr10	676671	C-T	Hetero	INTERGENIC
SBS	Chr10	1359859	G-A	Homo	INTERGENIC
SBS	Chr10	4054950	A-G	Hetero	INTERGENIC
SBS	Chr10	10209089	C-T	Hetero	INTERGENIC
SBS	Chr10	10389910	T-C	Hetero	INTERGENIC
SBS	Chr10	21287245	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	710669	A-G	Hetero	INTERGENIC
SBS	Chr11	3102227	C-T	Hetero	INTERGENIC
SBS	Chr11	8776266	C-T	Homo	INTERGENIC
SBS	Chr11	24428674	G-A	Hetero	INTERGENIC
SBS	Chr11	28135890	C-A	Homo	INTERGENIC
SBS	Chr11	28842178	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr11	28871810	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g236400
SBS	Chr1	1151010	C-T	Hetero	INTERGENIC
SBS	Chr1	8984381	C-A	Hetero	INTERGENIC
SBS	Chr1	16791224	A-T	Hetero	INTERGENIC
SBS	Chr1	18352528	G-T	Hetero	INTERGENIC
SBS	Chr1	21317906	C-T	Homo	INTERGENIC
SBS	Chr1	37578962	C-T	Hetero	INTERGENIC
SBS	Chr1	42219754	G-A	Hetero	INTERGENIC
SBS	Chr2	8843568	G-T	Hetero	INTERGENIC
SBS	Chr2	15939516	C-T	Hetero	INTERGENIC
SBS	Chr2	16171430	G-T	Hetero	INTERGENIC
SBS	Chr2	17865326	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g178500
SBS	Chr2	26845852	T-A	Hetero	INTERGENIC
SBS	Chr2	31039092	C-A	Hetero	INTERGENIC
SBS	Chr2	31777304	G-T	Hetero	INTERGENIC
SBS	Chr2	33002860	G-A	Hetero	INTERGENIC
SBS	Chr3	785960	T-G	Hetero	INTRON
SBS	Chr3	16798537	T-G	Hetero	INTERGENIC
SBS	Chr3	17112332	A-T	Hetero	INTERGENIC
SBS	Chr3	24817741	T-C	Hetero	INTERGENIC
SBS	Chr3	36346534	T-C	Hetero	INTRON
SBS	Chr3	36838242	G-T	Hetero	INTERGENIC
SBS	Chr3	36838255	T-A	Hetero	INTERGENIC
SBS	Chr4	1405622	C-T	Hetero	INTERGENIC
SBS	Chr4	3798960	A-C	Homo	INTRON
SBS	Chr4	10354025	A-C	Hetero	INTERGENIC
SBS	Chr4	15350715	T-C	Hetero	INTERGENIC
SBS	Chr4	20807742	G-A	Hetero	INTERGENIC
SBS	Chr4	24948471	G-T	Hetero	INTRON
SBS	Chr4	32351580	A-G	Hetero	INTERGENIC
SBS	Chr5	4698494	C-T	Homo	INTERGENIC
SBS	Chr5	12422022	G-A	Hetero	INTERGENIC
SBS	Chr5	22494875	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	26751399	A-T	Hetero	INTERGENIC
SBS	Chr5	29933749	C-T	Hetero	INTERGENIC
SBS	Chr6	6298425	G-A	Hetero	INTERGENIC
SBS	Chr6	12605951	T-A	Hetero	INTRON
SBS	Chr6	16255921	C-T	Hetero	INTERGENIC
SBS	Chr6	30483070	T-C	Homo	INTERGENIC
SBS	Chr7	573592	A-T	Hetero	INTERGENIC
SBS	Chr7	1728004	G-A	Hetero	INTERGENIC
SBS	Chr7	4903531	G-T	Hetero	INTERGENIC
SBS	Chr7	14688989	T-A	Hetero	INTERGENIC
SBS	Chr7	15384166	A-G	Hetero	INTERGENIC
SBS	Chr7	18399408	C-T	Hetero	UTR_5_PRIME
SBS	Chr7	25974587	C-T	Hetero	INTERGENIC
SBS	Chr8	927591	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g012200
SBS	Chr8	2829120	C-T	Hetero	INTERGENIC
SBS	Chr8	16672143	A-T	Hetero	INTERGENIC
SBS	Chr8	17456182	T-C	Hetero	INTERGENIC
SBS	Chr8	17587540	A-T	Hetero	INTERGENIC
SBS	Chr8	18656036	G-A	Hetero	INTERGENIC
SBS	Chr8	22008953	G-A	Hetero	INTERGENIC
SBS	Chr8	23940700	G-T	Hetero	INTERGENIC
SBS	Chr9	212430	T-G	Homo	INTRON
SBS	Chr9	1610525	G-T	Homo	INTRON
SBS	Chr9	13816835	T-A	Hetero	INTERGENIC
SBS	Chr9	18552359	A-T	Hetero	INTERGENIC
SBS	Chr10	1359859	G-A	Homo	INTERGENIC
SBS	Chr10	10389910	T-C	Hetero	INTERGENIC
SBS	Chr10	21287245	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	413084	C-T	Hetero	INTERGENIC
SBS	Chr11	8776266	C-T	Homo	INTERGENIC
SBS	Chr11	28135890	C-A	Homo	INTERGENIC
SBS	Chr11	28871810	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g236400
SBS	Chr12	17853267	G-T	Hetero	INTERGENIC
SBS	Chr12	26608696	A-T	Hetero	INTERGENIC

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes