Search Kitaake

Mutant Information

Mutant Name	FN2719-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2719-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 99

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4797755 C-T Hetero UTR_5_PRIME
SBS Chr1 10011778 G-A Homo INTERGENIC
SBS Chr2 5759888 A-G Hetero INTERGENIC
SBS Chr2 11003369 T-C Hetero INTERGENIC
SBS Chr2 14153602 C-G Hetero INTERGENIC
SBS Chr3 161370 G-C Hetero INTERGENIC
SBS Chr3 22444416 T-A Hetero INTERGENIC
SBS Chr3 23648741 G-T Hetero INTERGENIC
SBS Chr3 29338838 A-G Hetero INTRON
SBS Chr3 31363117 T-C Homo INTERGENIC
SBS Chr3 36835305 T-C Hetero INTRON
SBS Chr4 9677277 G-A Hetero INTERGENIC
SBS Chr4 14875102 A-G Hetero INTERGENIC
SBS Chr4 17084016 A-G Hetero INTERGENIC
SBS Chr4 28165695 G-A Hetero INTERGENIC
SBS Chr4 28651527 A-G Hetero INTERGENIC
SBS Chr4 28991955 T-A Hetero INTERGENIC
SBS Chr4 29922445 C-T Homo INTERGENIC
SBS Chr5 16957831 T-A Hetero UTR_3_PRIME
SBS Chr5 17890104 C-A Hetero INTERGENIC
SBS Chr5 28403581 T-C Homo INTERGENIC
SBS Chr5 29842907 A-T Homo INTERGENIC
SBS Chr6 11222840 T-C Hetero INTERGENIC
SBS Chr6 18543694 G-A Hetero INTERGENIC
SBS Chr6 18849341 A-G Hetero INTERGENIC
SBS Chr6 23307695 C-A Hetero START_GAINED
SBS Chr7 6285187 G-A Hetero INTERGENIC
SBS Chr7 8573448 T-C Hetero INTERGENIC
SBS Chr7 11548312 T-A Homo INTERGENIC
SBS Chr7 24578173 C-A Homo INTERGENIC
SBS Chr7 25443623 T-A Homo INTERGENIC
SBS Chr8 255531 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g003500
SBS Chr8 18752349 T-C Hetero INTERGENIC
SBS Chr8 20533015 G-A Hetero INTERGENIC
SBS Chr9 10563821 C-T Hetero INTERGENIC
SBS Chr9 20858828 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 10546228 C-A Hetero INTERGENIC
SBS Chr10 14326262 C-A Hetero UTR_3_PRIME
SBS Chr10 14680672 G-T Hetero INTERGENIC
SBS Chr10 19923175 T-A Hetero UTR_3_PRIME
SBS Chr10 22299947 C-A Hetero INTERGENIC
SBS Chr11 85270 C-T Hetero INTERGENIC
SBS Chr11 9063392 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g096100
SBS Chr11 11091502 T-C Hetero INTERGENIC
SBS Chr11 13743359 C-T Hetero INTERGENIC
SBS Chr11 15541887 A-G Hetero UTR_3_PRIME
SBS Chr11 22069229 A-G Hetero INTERGENIC
SBS Chr11 27187829 G-A Homo INTERGENIC
SBS Chr12 6738372 G-A Homo INTERGENIC
SBS Chr12 10475439 C-T Homo INTERGENIC
SBS Chr12 16081041 A-C Hetero INTERGENIC
SBS Chr12 21580278 A-T Hetero INTERGENIC
SBS Chr12 21660224 T-G Hetero INTERGENIC
SBS Chr1 4797755 C-T Hetero UTR_5_PRIME
SBS Chr1 9524863 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 10011778 G-A Homo INTERGENIC
SBS Chr2 11003369 T-C Hetero INTERGENIC
SBS Chr2 36776319 T-C Hetero INTRON
SBS Chr3 23648741 G-T Hetero INTERGENIC
SBS Chr3 29338838 A-G Hetero INTRON
SBS Chr4 20938643 T-A Hetero INTERGENIC
SBS Chr4 28165695 G-A Hetero INTERGENIC
SBS Chr4 29922445 C-T Homo INTERGENIC
SBS Chr4 32235685 C-A Hetero INTERGENIC
SBS Chr5 16573886 A-G Hetero INTERGENIC
SBS Chr5 16957831 T-A Hetero UTR_3_PRIME
SBS Chr5 17890104 C-A Hetero INTERGENIC
SBS Chr5 20221092 C-A Hetero INTERGENIC
SBS Chr5 28403581 T-C Homo INTERGENIC
SBS Chr5 29842907 A-T Homo INTERGENIC
SBS Chr6 13805949 G-A Hetero INTERGENIC
SBS Chr7 1391878 G-A Hetero INTERGENIC
SBS Chr7 6285187 G-A Hetero INTERGENIC
SBS Chr7 24578173 C-A Homo INTERGENIC
SBS Chr7 25443623 T-A Homo INTERGENIC
SBS Chr8 18752349 T-C Hetero INTERGENIC
SBS Chr8 19843758 C-T Hetero INTERGENIC
SBS Chr9 10563821 C-T Hetero INTERGENIC
SBS Chr9 20858828 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 6785652 G-A Hetero INTERGENIC
SBS Chr10 6786654 T-A Hetero INTERGENIC
SBS Chr10 19923175 T-A Hetero UTR_3_PRIME
SBS Chr10 22299947 C-A Hetero INTERGENIC
SBS Chr11 9063392 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g096100
SBS Chr11 11091502 T-C Hetero INTERGENIC
SBS Chr11 13743359 C-T Hetero INTERGENIC
SBS Chr11 14898960 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g122800
SBS Chr11 15541887 A-G Hetero UTR_3_PRIME
SBS Chr11 22069229 A-G Hetero INTERGENIC
SBS Chr11 27187829 G-A Homo INTERGENIC
SBS Chr11 27449525 C-T Hetero INTERGENIC
SBS Chr12 4676845 T-A Hetero INTERGENIC
SBS Chr12 6738372 G-A Homo INTERGENIC
SBS Chr12 7196560 C-T Hetero INTERGENIC
SBS Chr12 7452541 G-A Hetero INTERGENIC
SBS Chr12 10475439 C-T Homo INTERGENIC
SBS Chr12 12188128 T-C Hetero INTERGENIC
SBS Chr12 14858107 G-T Hetero INTERGENIC
SBS Chr12 21660224 T-G Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4951543 4951544 1 2
Deletion Chr3 6562155 6562156 1
Deletion Chr2 6852852 6852854 2
Deletion Chr5 7396001 7400000 3999
Deletion Chr4 11630478 11630483 5 2
Deletion Chr4 15652716 15652718 2 2
Deletion Chr1 23272937 23272954 17 2
Deletion Chr7 23625917 23625920 3 2

Insertions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 18604514 18604517 2
Insertion Chr2 21226792 21226795 2
Insertion Chr3 14519147 14519150 2
Insertion Chr4 29309780 29309783 2
Insertion Chr6 9699745 9699753 7
Insertion Chr10 23539072 23539076 3
Insertion Chr12 24525890 24525893 2
Insertion Chr3 29132300 29132303 2
Insertion Chr8 19807357 19807360 2
Insertion Chr10 23539072 23539075 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4797755	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	10011778	G-A	Homo	INTERGENIC
SBS	Chr2	5759888	A-G	Hetero	INTERGENIC
SBS	Chr2	11003369	T-C	Hetero	INTERGENIC
SBS	Chr2	14153602	C-G	Hetero	INTERGENIC
SBS	Chr3	161370	G-C	Hetero	INTERGENIC
SBS	Chr3	22444416	T-A	Hetero	INTERGENIC
SBS	Chr3	23648741	G-T	Hetero	INTERGENIC
SBS	Chr3	29338838	A-G	Hetero	INTRON
SBS	Chr3	31363117	T-C	Homo	INTERGENIC
SBS	Chr3	36835305	T-C	Hetero	INTRON
SBS	Chr4	9677277	G-A	Hetero	INTERGENIC
SBS	Chr4	14875102	A-G	Hetero	INTERGENIC
SBS	Chr4	17084016	A-G	Hetero	INTERGENIC
SBS	Chr4	28165695	G-A	Hetero	INTERGENIC
SBS	Chr4	28651527	A-G	Hetero	INTERGENIC
SBS	Chr4	28991955	T-A	Hetero	INTERGENIC
SBS	Chr4	29922445	C-T	Homo	INTERGENIC
SBS	Chr5	16957831	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	17890104	C-A	Hetero	INTERGENIC
SBS	Chr5	28403581	T-C	Homo	INTERGENIC
SBS	Chr5	29842907	A-T	Homo	INTERGENIC
SBS	Chr6	11222840	T-C	Hetero	INTERGENIC
SBS	Chr6	18543694	G-A	Hetero	INTERGENIC
SBS	Chr6	18849341	A-G	Hetero	INTERGENIC
SBS	Chr6	23307695	C-A	Hetero	START_GAINED
SBS	Chr7	6285187	G-A	Hetero	INTERGENIC
SBS	Chr7	8573448	T-C	Hetero	INTERGENIC
SBS	Chr7	11548312	T-A	Homo	INTERGENIC
SBS	Chr7	24578173	C-A	Homo	INTERGENIC
SBS	Chr7	25443623	T-A	Homo	INTERGENIC
SBS	Chr8	255531	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g003500
SBS	Chr8	18752349	T-C	Hetero	INTERGENIC
SBS	Chr8	20533015	G-A	Hetero	INTERGENIC
SBS	Chr9	10563821	C-T	Hetero	INTERGENIC
SBS	Chr9	20858828	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	10546228	C-A	Hetero	INTERGENIC
SBS	Chr10	14326262	C-A	Hetero	UTR_3_PRIME
SBS	Chr10	14680672	G-T	Hetero	INTERGENIC
SBS	Chr10	19923175	T-A	Hetero	UTR_3_PRIME
SBS	Chr10	22299947	C-A	Hetero	INTERGENIC
SBS	Chr11	85270	C-T	Hetero	INTERGENIC
SBS	Chr11	9063392	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g096100
SBS	Chr11	11091502	T-C	Hetero	INTERGENIC
SBS	Chr11	13743359	C-T	Hetero	INTERGENIC
SBS	Chr11	15541887	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	22069229	A-G	Hetero	INTERGENIC
SBS	Chr11	27187829	G-A	Homo	INTERGENIC
SBS	Chr12	6738372	G-A	Homo	INTERGENIC
SBS	Chr12	10475439	C-T	Homo	INTERGENIC
SBS	Chr12	16081041	A-C	Hetero	INTERGENIC
SBS	Chr12	21580278	A-T	Hetero	INTERGENIC
SBS	Chr12	21660224	T-G	Hetero	INTERGENIC
SBS	Chr1	4797755	C-T	Hetero	UTR_5_PRIME
SBS	Chr1	9524863	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	10011778	G-A	Homo	INTERGENIC
SBS	Chr2	11003369	T-C	Hetero	INTERGENIC
SBS	Chr2	36776319	T-C	Hetero	INTRON
SBS	Chr3	23648741	G-T	Hetero	INTERGENIC
SBS	Chr3	29338838	A-G	Hetero	INTRON
SBS	Chr4	20938643	T-A	Hetero	INTERGENIC
SBS	Chr4	28165695	G-A	Hetero	INTERGENIC
SBS	Chr4	29922445	C-T	Homo	INTERGENIC
SBS	Chr4	32235685	C-A	Hetero	INTERGENIC
SBS	Chr5	16573886	A-G	Hetero	INTERGENIC
SBS	Chr5	16957831	T-A	Hetero	UTR_3_PRIME
SBS	Chr5	17890104	C-A	Hetero	INTERGENIC
SBS	Chr5	20221092	C-A	Hetero	INTERGENIC
SBS	Chr5	28403581	T-C	Homo	INTERGENIC
SBS	Chr5	29842907	A-T	Homo	INTERGENIC
SBS	Chr6	13805949	G-A	Hetero	INTERGENIC
SBS	Chr7	1391878	G-A	Hetero	INTERGENIC
SBS	Chr7	6285187	G-A	Hetero	INTERGENIC
SBS	Chr7	24578173	C-A	Homo	INTERGENIC
SBS	Chr7	25443623	T-A	Homo	INTERGENIC
SBS	Chr8	18752349	T-C	Hetero	INTERGENIC
SBS	Chr8	19843758	C-T	Hetero	INTERGENIC
SBS	Chr9	10563821	C-T	Hetero	INTERGENIC
SBS	Chr9	20858828	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	6785652	G-A	Hetero	INTERGENIC
SBS	Chr10	6786654	T-A	Hetero	INTERGENIC
SBS	Chr10	19923175	T-A	Hetero	UTR_3_PRIME
SBS	Chr10	22299947	C-A	Hetero	INTERGENIC
SBS	Chr11	9063392	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g096100
SBS	Chr11	11091502	T-C	Hetero	INTERGENIC
SBS	Chr11	13743359	C-T	Hetero	INTERGENIC
SBS	Chr11	14898960	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g122800
SBS	Chr11	15541887	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	22069229	A-G	Hetero	INTERGENIC
SBS	Chr11	27187829	G-A	Homo	INTERGENIC
SBS	Chr11	27449525	C-T	Hetero	INTERGENIC
SBS	Chr12	4676845	T-A	Hetero	INTERGENIC
SBS	Chr12	6738372	G-A	Homo	INTERGENIC
SBS	Chr12	7196560	C-T	Hetero	INTERGENIC
SBS	Chr12	7452541	G-A	Hetero	INTERGENIC
SBS	Chr12	10475439	C-T	Homo	INTERGENIC
SBS	Chr12	12188128	T-C	Hetero	INTERGENIC
SBS	Chr12	14858107	G-T	Hetero	INTERGENIC
SBS	Chr12	21660224	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4951543	4951544	1	2
Deletion	Chr3	6562155	6562156	1
Deletion	Chr2	6852852	6852854	2
Deletion	Chr5	7396001	7400000	3999
Deletion	Chr4	11630478	11630483	5	2
Deletion	Chr4	15652716	15652718	2	2
Deletion	Chr1	23272937	23272954	17	2
Deletion	Chr7	23625917	23625920	3	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes