Search Kitaake

Mutant Information

Mutant Name	FN2721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2721-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 55

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3981773	G-A	Hetero	INTERGENIC
SBS	Chr1	19376271	G-A	Hetero	INTERGENIC
SBS	Chr1	26015206	G-C	Hetero	INTRON
SBS	Chr1	31403640	A-C	Homo	INTERGENIC
SBS	Chr1	32848994	T-C	Homo	INTERGENIC
SBS	Chr2	3396112	A-G	Hetero	INTERGENIC
SBS	Chr2	11814254	C-T	Homo	INTRON
SBS	Chr2	14468739	C-A	Hetero	INTERGENIC
SBS	Chr2	17056031	G-T	Homo	INTERGENIC
SBS	Chr2	17066209	C-T	Hetero	INTERGENIC
SBS	Chr2	21163856	T-C	Hetero	INTERGENIC
SBS	Chr2	33222813	G-A	Hetero	INTERGENIC
SBS	Chr3	1435277	G-A	Hetero	INTERGENIC
SBS	Chr3	3714208	C-T	Hetero	INTERGENIC
SBS	Chr3	8785833	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g119900
SBS	Chr3	11205491	G-A	Homo	INTRON
SBS	Chr3	19026705	G-A	Hetero	INTERGENIC
SBS	Chr3	21797066	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	23279747	G-T	Hetero	UTR_5_PRIME
SBS	Chr3	26768141	G-A	Hetero	INTERGENIC
SBS	Chr3	26896128	C-A	Hetero	INTERGENIC
SBS	Chr4	7171377	G-T	Hetero	INTERGENIC
SBS	Chr4	10630876	G-A	Hetero	INTERGENIC
SBS	Chr4	12925721	G-A	Hetero	INTERGENIC
SBS	Chr4	17514397	A-T	Hetero	INTERGENIC
SBS	Chr4	28746438	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g215500
SBS	Chr4	34594011	G-A	Hetero	INTERGENIC
SBS	Chr5	17170014	C-T	Homo	INTERGENIC
SBS	Chr5	28984583	C-A	Homo	INTERGENIC
SBS	Chr6	10860678	C-G	Homo	INTERGENIC
SBS	Chr6	12622228	C-T	Homo	INTERGENIC
SBS	Chr6	14640806	G-A	Hetero	INTERGENIC
SBS	Chr6	25089372	T-C	Homo	INTERGENIC
SBS	Chr6	28344407	C-T	Hetero	INTERGENIC
SBS	Chr7	1008984	G-C	Hetero	INTERGENIC
SBS	Chr7	16055012	G-A	Hetero	INTERGENIC
SBS	Chr7	26245679	C-T	Hetero	INTERGENIC
SBS	Chr8	1210898	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	10643848	G-A	Hetero	INTERGENIC
SBS	Chr9	3163776	G-A	Hetero	INTERGENIC
SBS	Chr9	7279361	C-T	Homo	INTERGENIC
SBS	Chr9	11904580	G-A	Hetero	INTERGENIC
SBS	Chr9	18368737	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g143300
SBS	Chr10	6809895	G-A	Homo	INTERGENIC
SBS	Chr10	8204858	C-T	Hetero	INTERGENIC
SBS	Chr10	16231394	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g109300
SBS	Chr10	17014229	A-G	Homo	INTERGENIC
SBS	Chr11	7346993	C-T	Hetero	INTERGENIC
SBS	Chr11	8516073	T-G	Hetero	INTERGENIC
SBS	Chr11	15497050	T-A	Hetero	INTERGENIC
SBS	Chr11	16382412	A-G	Homo	INTRON
SBS	Chr12	7812953	C-T	Homo	INTRON
SBS	Chr12	9001127	G-T	Homo	INTERGENIC
SBS	Chr12	12892410	G-A	Homo	INTERGENIC
SBS	Chr12	19958769	G-A	Hetero	INTERGENIC

Deletions: 16

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2034283	2034284	1
Deletion	Chr7	2580684	2580685	1
Deletion	Chr7	6241273	6241281	8
Deletion	Chr10	12652353	12652371	18
Deletion	Chr6	13487769	13487771	2
Deletion	Chr2	13691376	13691382	6
Deletion	Chr12	13799001	13993000	193999	10
Deletion	Chr1	16829015	16829020	5
Deletion	Chr9	19558686	19558688	2
Deletion	Chr4	19891444	19891445	1
Deletion	Chr5	20245478	20245481	3	OsKitaake05g161200
Deletion	Chr8	21512716	21512718	2
Deletion	Chr9	21753001	21862000	108999	17
Deletion	Chr2	29290848	29290850	2
Deletion	Chr1	31009744	31009745	1
Deletion	Chr1	42609001	42634000	24999	6

Insertions: 2

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr6	5698794	5698798	3
Insertion	Chr11	8410519	8410522	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	5561021	5892678
Inversion	Chr7	5561033	5892691
Inversion	Chr12	13438217	13799127	OsKitaake12g111400
Inversion	Chr12	13438235	13993470	OsKitaake12g111400

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	5243205	Chr1	5591838
Translocation	Chr9	15673582	Chr7	10195157
Translocation	Chr9	15673588	Chr7	10194746

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes