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Mutant Information

Mutant Name	FN2723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2723-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 101

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1516836 G-A Hetero INTERGENIC
SBS Chr1 20588014 G-A Hetero INTERGENIC
SBS Chr1 31646769 C-T Hetero INTRON
SBS Chr1 44058923 T-A Hetero INTERGENIC
SBS Chr1 44058928 G-T Hetero INTERGENIC
SBS Chr2 2460588 C-G Hetero INTERGENIC
SBS Chr2 4361441 G-A Homo UTR_3_PRIME
SBS Chr2 11968105 C-T Hetero INTERGENIC
SBS Chr2 16445369 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 22188681 G-A Hetero INTERGENIC
SBS Chr2 23476939 G-A Hetero INTERGENIC
SBS Chr3 1609223 G-A Homo UTR_5_PRIME
SBS Chr3 6513284 G-A Hetero INTRON
SBS Chr3 22654552 G-T Homo INTERGENIC
SBS Chr3 29905297 T-G Hetero SYNONYMOUS_CODING
SBS Chr4 2836110 G-A Hetero INTERGENIC
SBS Chr4 13492785 G-A Homo INTERGENIC
SBS Chr4 13492786 G-A Homo INTERGENIC
SBS Chr4 35414913 G-A Hetero INTERGENIC
SBS Chr5 3020561 C-A Hetero INTRON
SBS Chr5 18229538 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 24530725 G-A Hetero INTERGENIC
SBS Chr5 29777449 T-C Hetero INTERGENIC
SBS Chr6 4560713 T-A Homo INTERGENIC
SBS Chr7 525121 G-A Homo UTR_5_PRIME
SBS Chr7 14187891 C-T Hetero INTERGENIC
SBS Chr7 16939527 A-G Hetero INTERGENIC
SBS Chr7 21583198 T-G Hetero INTERGENIC
SBS Chr8 5472623 G-A Hetero INTERGENIC
SBS Chr8 6326452 G-A Hetero INTERGENIC
SBS Chr8 12690971 T-C Hetero INTERGENIC
SBS Chr8 19154992 C-A Hetero INTERGENIC
SBS Chr9 2781505 G-T Hetero INTERGENIC
SBS Chr9 8128817 C-G Hetero INTERGENIC
SBS Chr9 14690044 A-T Hetero INTERGENIC
SBS Chr9 17612264 A-C Hetero INTRON
SBS Chr10 330973 G-A Hetero INTERGENIC
SBS Chr10 19562049 A-T Hetero INTERGENIC
SBS Chr10 19613028 T-A Hetero INTERGENIC
SBS Chr10 22948657 C-T Hetero INTERGENIC
SBS Chr11 10264089 G-T Hetero INTERGENIC
SBS Chr11 10495869 C-T Hetero INTERGENIC
SBS Chr11 12830889 C-A Hetero INTERGENIC
SBS Chr11 13743676 G-A Hetero INTERGENIC
SBS Chr11 22489952 C-A Hetero INTERGENIC
SBS Chr12 1085256 A-T Homo INTERGENIC
SBS Chr12 3145708 C-A Hetero INTERGENIC
SBS Chr12 13594409 T-C Hetero INTERGENIC
SBS Chr12 14178421 C-T Hetero INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC
SBS Chr12 16006445 A-G Hetero INTERGENIC
SBS Chr1 17440456 C-A Hetero INTERGENIC
SBS Chr1 18619831 G-A Hetero INTERGENIC
SBS Chr1 20588014 G-A Hetero INTERGENIC
SBS Chr1 31646769 C-T Hetero INTRON
SBS Chr1 33762541 A-T Hetero INTERGENIC
SBS Chr1 34867472 G-A Hetero INTERGENIC
SBS Chr1 41320868 T-A Hetero INTERGENIC
SBS Chr1 44058923 T-A Hetero INTERGENIC
SBS Chr1 44058928 G-T Hetero INTERGENIC
SBS Chr2 2460588 C-G Hetero INTERGENIC
SBS Chr2 4361441 G-A Homo UTR_3_PRIME
SBS Chr2 15559425 G-T Hetero INTERGENIC
SBS Chr2 16445369 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 22188681 G-A Hetero INTERGENIC
SBS Chr2 29769002 C-A Hetero INTRON
SBS Chr3 1609223 G-A Homo UTR_5_PRIME
SBS Chr3 6513284 G-A Hetero INTRON
SBS Chr3 22654552 G-T Homo INTERGENIC
SBS Chr3 35761356 G-T Hetero INTERGENIC
SBS Chr4 2518841 G-A Hetero INTERGENIC
SBS Chr4 2836110 G-A Hetero INTERGENIC
SBS Chr4 13492785 G-A Homo INTERGENIC
SBS Chr4 13492786 G-A Homo INTERGENIC
SBS Chr4 13831003 C-T Hetero UTR_3_PRIME
SBS Chr4 21471583 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g120400
SBS Chr4 26843309 G-A Hetero INTERGENIC
SBS Chr5 12259955 C-A Hetero INTERGENIC
SBS Chr5 18229538 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 23010893 C-A Hetero INTERGENIC
SBS Chr6 4560713 T-A Homo INTERGENIC
SBS Chr6 13353424 G-A Hetero INTERGENIC
SBS Chr6 18882995 C-T Hetero INTERGENIC
SBS Chr6 19306554 A-G Hetero INTERGENIC
SBS Chr7 525121 G-A Homo UTR_5_PRIME
SBS Chr7 14187891 C-T Hetero INTERGENIC
SBS Chr7 16939527 A-G Hetero INTERGENIC
SBS Chr7 21583198 T-G Hetero INTERGENIC
SBS Chr7 26043821 A-G Hetero INTERGENIC
SBS Chr8 7645908 G-A Hetero INTERGENIC
SBS Chr9 14690044 A-T Hetero INTERGENIC
SBS Chr9 17612264 A-C Hetero INTRON
SBS Chr10 4764381 C-T Hetero INTERGENIC
SBS Chr10 19562049 A-T Hetero INTERGENIC
SBS Chr11 10495869 C-T Hetero INTERGENIC
SBS Chr12 1085256 A-T Homo INTERGENIC
SBS Chr12 3145708 C-A Hetero INTERGENIC
SBS Chr12 13276270 A-C Hetero INTERGENIC
SBS Chr12 14178421 C-T Hetero INTERGENIC
SBS Chr12 15238112 T-C Homo INTERGENIC
SBS Chr12 16200895 G-A Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 3631215 3631216 1 2
Deletion Chr7 4078438 4078440 2
Deletion Chr12 5363701 5363702 1
Deletion Chr4 6800090 6800097 7 2
Deletion Chr2 9084128 9084130 2
Deletion Chr5 10147547 10147549 2
Deletion Chr12 15067577 15067578 1
Deletion Chr3 15222649 15222651 2 OsKitaake03g197400
Deletion Chr12 16604571 16604573 2
Deletion Chr11 17815001 17852000 36999 3
Deletion Chr11 17819001 17857000 37999 3
Deletion Chr2 18332282 18332288 6
Deletion Chr2 18772378 18772380 2
Deletion Chr10 20268739 20268740 1
Deletion Chr12 20314444 20314490 46
Deletion Chr9 21234171 21234187 16
Deletion Chr2 22730590 22730596 6
Deletion Chr4 31103387 31103393 6
Deletion Chr4 33349319 33349340 21 2
Deletion Chr2 35358695 35358705 10

Insertions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 25051866 25051869 2
Insertion Chr3 10330492 10330495 2
Insertion Chr4 21775711 21775714 2
Insertion Chr6 1061584 1061587 2
Insertion Chr6 26744194 26744197 2
Insertion Chr9 7895265 7895268 2
Insertion Chr9 18543934 18543937 2
Insertion Chr3 2382740 2382743 2
Insertion Chr3 24890108 24890114 5
Insertion Chr3 24972803 24972806 2
Insertion Chr5 10666261 10666265 3
Insertion Chr6 29378940 29378943 2
Insertion Chr8 18171081 18171086 4
Insertion Chr11 2933278 2933289 10
Insertion Chr11 21376013 21376016 2
Insertion Chr5 30236466 30236474 7

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 4774450 5119696 OsKitaake02g070700
Inversion Chr2 4774460 5119710 OsKitaake02g070700

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8658487 Chr1 17293320 OsKitaake10g053166
Translocation Chr9 12092753 Chr3 17746606 OsKitaake09g078000
Translocation Chr9 12092754 Chr3 17747093 OsKitaake09g078000
Translocation Chr10 13129555 Chr4 9662521
Translocation Chr11 17727978 Chr2 967247 OsKitaake11g139000
Translocation Chr11 17728514 Chr2 967247 OsKitaake11g139000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1516836	G-A	Hetero	INTERGENIC
SBS	Chr1	20588014	G-A	Hetero	INTERGENIC
SBS	Chr1	31646769	C-T	Hetero	INTRON
SBS	Chr1	44058923	T-A	Hetero	INTERGENIC
SBS	Chr1	44058928	G-T	Hetero	INTERGENIC
SBS	Chr2	2460588	C-G	Hetero	INTERGENIC
SBS	Chr2	4361441	G-A	Homo	UTR_3_PRIME
SBS	Chr2	11968105	C-T	Hetero	INTERGENIC
SBS	Chr2	16445369	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22188681	G-A	Hetero	INTERGENIC
SBS	Chr2	23476939	G-A	Hetero	INTERGENIC
SBS	Chr3	1609223	G-A	Homo	UTR_5_PRIME
SBS	Chr3	6513284	G-A	Hetero	INTRON
SBS	Chr3	22654552	G-T	Homo	INTERGENIC
SBS	Chr3	29905297	T-G	Hetero	SYNONYMOUS_CODING
SBS	Chr4	2836110	G-A	Hetero	INTERGENIC
SBS	Chr4	13492785	G-A	Homo	INTERGENIC
SBS	Chr4	13492786	G-A	Homo	INTERGENIC
SBS	Chr4	35414913	G-A	Hetero	INTERGENIC
SBS	Chr5	3020561	C-A	Hetero	INTRON
SBS	Chr5	18229538	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	24530725	G-A	Hetero	INTERGENIC
SBS	Chr5	29777449	T-C	Hetero	INTERGENIC
SBS	Chr6	4560713	T-A	Homo	INTERGENIC
SBS	Chr7	525121	G-A	Homo	UTR_5_PRIME
SBS	Chr7	14187891	C-T	Hetero	INTERGENIC
SBS	Chr7	16939527	A-G	Hetero	INTERGENIC
SBS	Chr7	21583198	T-G	Hetero	INTERGENIC
SBS	Chr8	5472623	G-A	Hetero	INTERGENIC
SBS	Chr8	6326452	G-A	Hetero	INTERGENIC
SBS	Chr8	12690971	T-C	Hetero	INTERGENIC
SBS	Chr8	19154992	C-A	Hetero	INTERGENIC
SBS	Chr9	2781505	G-T	Hetero	INTERGENIC
SBS	Chr9	8128817	C-G	Hetero	INTERGENIC
SBS	Chr9	14690044	A-T	Hetero	INTERGENIC
SBS	Chr9	17612264	A-C	Hetero	INTRON
SBS	Chr10	330973	G-A	Hetero	INTERGENIC
SBS	Chr10	19562049	A-T	Hetero	INTERGENIC
SBS	Chr10	19613028	T-A	Hetero	INTERGENIC
SBS	Chr10	22948657	C-T	Hetero	INTERGENIC
SBS	Chr11	10264089	G-T	Hetero	INTERGENIC
SBS	Chr11	10495869	C-T	Hetero	INTERGENIC
SBS	Chr11	12830889	C-A	Hetero	INTERGENIC
SBS	Chr11	13743676	G-A	Hetero	INTERGENIC
SBS	Chr11	22489952	C-A	Hetero	INTERGENIC
SBS	Chr12	1085256	A-T	Homo	INTERGENIC
SBS	Chr12	3145708	C-A	Hetero	INTERGENIC
SBS	Chr12	13594409	T-C	Hetero	INTERGENIC
SBS	Chr12	14178421	C-T	Hetero	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC
SBS	Chr12	16006445	A-G	Hetero	INTERGENIC
SBS	Chr1	17440456	C-A	Hetero	INTERGENIC
SBS	Chr1	18619831	G-A	Hetero	INTERGENIC
SBS	Chr1	20588014	G-A	Hetero	INTERGENIC
SBS	Chr1	31646769	C-T	Hetero	INTRON
SBS	Chr1	33762541	A-T	Hetero	INTERGENIC
SBS	Chr1	34867472	G-A	Hetero	INTERGENIC
SBS	Chr1	41320868	T-A	Hetero	INTERGENIC
SBS	Chr1	44058923	T-A	Hetero	INTERGENIC
SBS	Chr1	44058928	G-T	Hetero	INTERGENIC
SBS	Chr2	2460588	C-G	Hetero	INTERGENIC
SBS	Chr2	4361441	G-A	Homo	UTR_3_PRIME
SBS	Chr2	15559425	G-T	Hetero	INTERGENIC
SBS	Chr2	16445369	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	22188681	G-A	Hetero	INTERGENIC
SBS	Chr2	29769002	C-A	Hetero	INTRON
SBS	Chr3	1609223	G-A	Homo	UTR_5_PRIME
SBS	Chr3	6513284	G-A	Hetero	INTRON
SBS	Chr3	22654552	G-T	Homo	INTERGENIC
SBS	Chr3	35761356	G-T	Hetero	INTERGENIC
SBS	Chr4	2518841	G-A	Hetero	INTERGENIC
SBS	Chr4	2836110	G-A	Hetero	INTERGENIC
SBS	Chr4	13492785	G-A	Homo	INTERGENIC
SBS	Chr4	13492786	G-A	Homo	INTERGENIC
SBS	Chr4	13831003	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	21471583	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g120400
SBS	Chr4	26843309	G-A	Hetero	INTERGENIC
SBS	Chr5	12259955	C-A	Hetero	INTERGENIC
SBS	Chr5	18229538	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23010893	C-A	Hetero	INTERGENIC
SBS	Chr6	4560713	T-A	Homo	INTERGENIC
SBS	Chr6	13353424	G-A	Hetero	INTERGENIC
SBS	Chr6	18882995	C-T	Hetero	INTERGENIC
SBS	Chr6	19306554	A-G	Hetero	INTERGENIC
SBS	Chr7	525121	G-A	Homo	UTR_5_PRIME
SBS	Chr7	14187891	C-T	Hetero	INTERGENIC
SBS	Chr7	16939527	A-G	Hetero	INTERGENIC
SBS	Chr7	21583198	T-G	Hetero	INTERGENIC
SBS	Chr7	26043821	A-G	Hetero	INTERGENIC
SBS	Chr8	7645908	G-A	Hetero	INTERGENIC
SBS	Chr9	14690044	A-T	Hetero	INTERGENIC
SBS	Chr9	17612264	A-C	Hetero	INTRON
SBS	Chr10	4764381	C-T	Hetero	INTERGENIC
SBS	Chr10	19562049	A-T	Hetero	INTERGENIC
SBS	Chr11	10495869	C-T	Hetero	INTERGENIC
SBS	Chr12	1085256	A-T	Homo	INTERGENIC
SBS	Chr12	3145708	C-A	Hetero	INTERGENIC
SBS	Chr12	13276270	A-C	Hetero	INTERGENIC
SBS	Chr12	14178421	C-T	Hetero	INTERGENIC
SBS	Chr12	15238112	T-C	Homo	INTERGENIC
SBS	Chr12	16200895	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	3631215	3631216	1	2
Deletion	Chr7	4078438	4078440	2
Deletion	Chr12	5363701	5363702	1
Deletion	Chr4	6800090	6800097	7	2
Deletion	Chr2	9084128	9084130	2
Deletion	Chr5	10147547	10147549	2
Deletion	Chr12	15067577	15067578	1
Deletion	Chr3	15222649	15222651	2	OsKitaake03g197400
Deletion	Chr12	16604571	16604573	2
Deletion	Chr11	17815001	17852000	36999	3
Deletion	Chr11	17819001	17857000	37999	3
Deletion	Chr2	18332282	18332288	6
Deletion	Chr2	18772378	18772380	2
Deletion	Chr10	20268739	20268740	1
Deletion	Chr12	20314444	20314490	46
Deletion	Chr9	21234171	21234187	16
Deletion	Chr2	22730590	22730596	6
Deletion	Chr4	31103387	31103393	6
Deletion	Chr4	33349319	33349340	21	2
Deletion	Chr2	35358695	35358705	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	4774450	5119696	OsKitaake02g070700
Inversion	Chr2	4774460	5119710	OsKitaake02g070700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes