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Mutant Information

Mutant Name	FN2724-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2724-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13027416 A-G Hetero INTERGENIC
SBS Chr1 17017440 T-A Hetero INTERGENIC
SBS Chr1 25547207 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 43364631 A-G Hetero INTERGENIC
SBS Chr1 43704386 G-A Hetero INTERGENIC
SBS Chr2 29915468 C-A Homo INTERGENIC
SBS Chr2 30773629 C-T Homo INTRON
SBS Chr2 30773630 A-T Homo INTRON
SBS Chr3 19742857 C-T Homo INTERGENIC
SBS Chr3 21506351 T-A Homo INTERGENIC
SBS Chr3 26842389 C-A Hetero INTERGENIC
SBS Chr3 28596237 T-C Hetero SPLICE_SITE_REGION
SBS Chr3 29381014 G-A Hetero INTERGENIC
SBS Chr3 30600606 C-A Hetero INTERGENIC
SBS Chr3 32102820 A-C Hetero INTERGENIC
SBS Chr4 1368507 A-G Hetero INTERGENIC
SBS Chr4 14546497 C-T Hetero INTERGENIC
SBS Chr4 23753364 A-G Hetero INTRON
SBS Chr5 19939009 C-T Homo INTERGENIC
SBS Chr5 19939010 A-T Homo INTERGENIC
SBS Chr6 1325778 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g015000
SBS Chr6 1908010 C-A Hetero INTERGENIC
SBS Chr6 1908011 C-T Hetero INTERGENIC
SBS Chr6 11498356 T-A Hetero INTERGENIC
SBS Chr6 28802277 T-A Hetero INTERGENIC
SBS Chr7 12322655 T-C Hetero INTRON
SBS Chr8 2334036 A-G Hetero INTERGENIC
SBS Chr8 2523685 G-C Hetero INTERGENIC
SBS Chr8 8344131 C-T Hetero INTERGENIC
SBS Chr8 18852877 G-A Homo INTERGENIC
SBS Chr8 21249383 A-T Homo INTERGENIC
SBS Chr9 1302404 A-T Hetero INTERGENIC
SBS Chr10 9687771 A-G Homo INTERGENIC
SBS Chr10 15671841 T-C Homo NON_SYNONYMOUS_CODING OsKitaake10g102400
SBS Chr11 15218785 G-A Hetero INTERGENIC
SBS Chr12 14643350 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 994001 1152000 157999 30
Deletion Chr6 1149001 1158000 8999 OsKitaake06g013200
Deletion Chr6 4245735 4245737 2
Deletion Chr10 4295928 4295930 2
Deletion Chr5 9171557 9171568 11
Deletion Chr10 9267442 9267458 16
Deletion Chr4 9355763 9355764 1
Deletion Chr12 9900093 9900095 2
Deletion Chr7 13726001 13730000 3999
Deletion Chr11 15814735 15814738 3
Deletion Chr10 16409370 16409372 2
Deletion Chr7 19921281 19921293 12
Deletion Chr2 24722569 24722571 2
Deletion Chr7 24838880 24838886 6
Deletion Chr4 31762229 31762232 3
Deletion Chr3 32637204 32637208 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 20895261 20895266 4
Insertion Chr8 25084702 25084705 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 996928 1879331 2
Inversion Chr3 1150439 1597996 OsKitaake03g018050
Inversion Chr7 12206669 12264418

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 5402668 Chr10 17446620
Translocation Chr11 5402905 Chr10 17446603

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13027416	A-G	Hetero	INTERGENIC
SBS	Chr1	17017440	T-A	Hetero	INTERGENIC
SBS	Chr1	25547207	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	43364631	A-G	Hetero	INTERGENIC
SBS	Chr1	43704386	G-A	Hetero	INTERGENIC
SBS	Chr2	29915468	C-A	Homo	INTERGENIC
SBS	Chr2	30773629	C-T	Homo	INTRON
SBS	Chr2	30773630	A-T	Homo	INTRON
SBS	Chr3	19742857	C-T	Homo	INTERGENIC
SBS	Chr3	21506351	T-A	Homo	INTERGENIC
SBS	Chr3	26842389	C-A	Hetero	INTERGENIC
SBS	Chr3	28596237	T-C	Hetero	SPLICE_SITE_REGION
SBS	Chr3	29381014	G-A	Hetero	INTERGENIC
SBS	Chr3	30600606	C-A	Hetero	INTERGENIC
SBS	Chr3	32102820	A-C	Hetero	INTERGENIC
SBS	Chr4	1368507	A-G	Hetero	INTERGENIC
SBS	Chr4	14546497	C-T	Hetero	INTERGENIC
SBS	Chr4	23753364	A-G	Hetero	INTRON
SBS	Chr5	19939009	C-T	Homo	INTERGENIC
SBS	Chr5	19939010	A-T	Homo	INTERGENIC
SBS	Chr6	1325778	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g015000
SBS	Chr6	1908010	C-A	Hetero	INTERGENIC
SBS	Chr6	1908011	C-T	Hetero	INTERGENIC
SBS	Chr6	11498356	T-A	Hetero	INTERGENIC
SBS	Chr6	28802277	T-A	Hetero	INTERGENIC
SBS	Chr7	12322655	T-C	Hetero	INTRON
SBS	Chr8	2334036	A-G	Hetero	INTERGENIC
SBS	Chr8	2523685	G-C	Hetero	INTERGENIC
SBS	Chr8	8344131	C-T	Hetero	INTERGENIC
SBS	Chr8	18852877	G-A	Homo	INTERGENIC
SBS	Chr8	21249383	A-T	Homo	INTERGENIC
SBS	Chr9	1302404	A-T	Hetero	INTERGENIC
SBS	Chr10	9687771	A-G	Homo	INTERGENIC
SBS	Chr10	15671841	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g102400
SBS	Chr11	15218785	G-A	Hetero	INTERGENIC
SBS	Chr12	14643350	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	994001	1152000	157999	30
Deletion	Chr6	1149001	1158000	8999	OsKitaake06g013200
Deletion	Chr6	4245735	4245737	2
Deletion	Chr10	4295928	4295930	2
Deletion	Chr5	9171557	9171568	11
Deletion	Chr10	9267442	9267458	16
Deletion	Chr4	9355763	9355764	1
Deletion	Chr12	9900093	9900095	2
Deletion	Chr7	13726001	13730000	3999
Deletion	Chr11	15814735	15814738	3
Deletion	Chr10	16409370	16409372	2
Deletion	Chr7	19921281	19921293	12
Deletion	Chr2	24722569	24722571	2
Deletion	Chr7	24838880	24838886	6
Deletion	Chr4	31762229	31762232	3
Deletion	Chr3	32637204	32637208	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	996928	1879331	2
Inversion	Chr3	1150439	1597996	OsKitaake03g018050
Inversion	Chr7	12206669	12264418

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes