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Mutant Information

Mutant Name	FN2725-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2725-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 147

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1286012 A-G Homo INTERGENIC
SBS Chr1 4266785 C-A Hetero UTR_5_PRIME
SBS Chr1 11937524 C-T Hetero INTERGENIC
SBS Chr1 15895906 C-T Homo INTRON
SBS Chr1 17373444 A-G Homo INTERGENIC
SBS Chr1 17498160 T-G Homo INTERGENIC
SBS Chr1 33899099 C-T Hetero INTERGENIC
SBS Chr1 33999698 C-G Hetero INTERGENIC
SBS Chr1 34797818 G-A Hetero INTERGENIC
SBS Chr1 35267966 C-T Hetero INTERGENIC
SBS Chr1 41927490 C-T Hetero INTERGENIC
SBS Chr2 7260190 A-G Homo INTERGENIC
SBS Chr2 7590866 G-C Homo INTRON
SBS Chr2 24148466 A-T Homo INTRON
SBS Chr2 26402277 A-C Homo INTRON
SBS Chr2 34504799 C-T Hetero INTERGENIC
SBS Chr3 2628916 G-A Hetero INTERGENIC
SBS Chr3 5022597 G-A Homo INTERGENIC
SBS Chr3 8836715 C-T Homo INTERGENIC
SBS Chr3 15295744 C-T Hetero INTERGENIC
SBS Chr3 21025983 A-T Hetero INTRON
SBS Chr3 26532893 T-A Hetero INTERGENIC
SBS Chr3 26532894 T-A Hetero INTERGENIC
SBS Chr3 28503799 A-C Hetero INTRON
SBS Chr3 32142481 T-C Hetero INTERGENIC
SBS Chr3 34702239 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g377800
SBS Chr3 36927728 G-A Hetero INTERGENIC
SBS Chr4 5587225 A-T Hetero INTERGENIC
SBS Chr4 25735360 G-T Hetero INTRON
SBS Chr4 28139315 T-G Hetero INTERGENIC
SBS Chr4 31436033 C-A Hetero INTERGENIC
SBS Chr5 5346498 C-G Hetero INTERGENIC
SBS Chr5 14308879 G-A Hetero INTERGENIC
SBS Chr5 19202461 T-C Hetero INTERGENIC
SBS Chr6 4024003 G-A Hetero INTERGENIC
SBS Chr6 10172157 G-T Hetero INTERGENIC
SBS Chr6 15865010 A-T Hetero INTERGENIC
SBS Chr6 15865011 T-A Hetero INTERGENIC
SBS Chr6 18155365 C-T Hetero INTERGENIC
SBS Chr6 19713191 C-A Hetero UTR_3_PRIME
SBS Chr7 7041363 T-C Hetero INTERGENIC
SBS Chr7 18635158 G-A Homo INTERGENIC
SBS Chr7 23472990 C-T Hetero INTERGENIC
SBS Chr7 23547387 G-A Homo INTERGENIC
SBS Chr7 26709105 A-G Homo INTERGENIC
SBS Chr7 27917858 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g261800
SBS Chr8 8724872 T-C Hetero INTERGENIC
SBS Chr8 17742549 T-C Hetero INTERGENIC
SBS Chr8 21461058 C-T Hetero INTERGENIC
SBS Chr8 24055449 A-T Homo INTERGENIC
SBS Chr9 1915708 G-A Hetero INTERGENIC
SBS Chr9 1959077 C-T Hetero INTERGENIC
SBS Chr9 17218853 T-C Homo INTERGENIC
SBS Chr9 22191306 T-C Hetero INTERGENIC
SBS Chr10 3403688 C-T Hetero INTERGENIC
SBS Chr10 3409790 G-C Homo INTERGENIC
SBS Chr10 7185862 A-G Homo INTERGENIC
SBS Chr10 9553229 C-T Homo INTRON
SBS Chr10 10773559 A-G Homo INTERGENIC
SBS Chr10 12727339 T-A Homo INTRON
SBS Chr10 16696740 A-G Homo INTRON
SBS Chr10 21362210 C-A Homo INTERGENIC
SBS Chr10 22853774 G-T Homo UTR_5_PRIME
SBS Chr11 2332707 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g033750
SBS Chr11 14724720 G-T Hetero INTERGENIC
SBS Chr11 17582108 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g137800
SBS Chr11 22558407 C-G Hetero INTERGENIC
SBS Chr11 24208788 C-T Hetero INTERGENIC
SBS Chr12 3564045 C-T Hetero INTERGENIC
SBS Chr12 6135098 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 11919201 G-C Hetero INTERGENIC
SBS Chr12 21622715 C-T Hetero INTERGENIC
SBS Chr1 1286012 A-G Homo INTERGENIC
SBS Chr1 4266785 C-A Hetero UTR_5_PRIME
SBS Chr1 11937524 C-T Hetero INTERGENIC
SBS Chr1 15895906 C-T Homo INTRON
SBS Chr1 17373444 A-G Homo INTERGENIC
SBS Chr1 17498160 T-G Homo INTERGENIC
SBS Chr1 33899099 C-T Hetero INTERGENIC
SBS Chr1 33999698 C-G Hetero INTERGENIC
SBS Chr1 35020891 A-C Hetero INTRON
SBS Chr1 35267966 C-T Hetero INTERGENIC
SBS Chr1 41927490 C-T Hetero INTERGENIC
SBS Chr2 7260190 A-G Homo INTERGENIC
SBS Chr2 7590866 G-C Homo INTRON
SBS Chr2 16060394 G-A Hetero INTERGENIC
SBS Chr2 24148466 A-T Homo INTRON
SBS Chr2 26402277 A-C Homo INTRON
SBS Chr2 34504799 C-T Hetero INTERGENIC
SBS Chr3 2628916 G-A Hetero INTERGENIC
SBS Chr3 5022597 G-A Homo INTERGENIC
SBS Chr3 8836715 C-T Homo INTERGENIC
SBS Chr3 15295744 C-T Hetero INTERGENIC
SBS Chr3 21025983 A-T Hetero INTRON
SBS Chr3 26532893 T-A Hetero INTERGENIC
SBS Chr3 26532894 T-A Hetero INTERGENIC
SBS Chr3 27986896 C-A Hetero INTERGENIC
SBS Chr3 28503799 A-C Hetero INTRON
SBS Chr3 32142481 T-C Hetero INTERGENIC
SBS Chr4 14077707 A-T Hetero INTERGENIC
SBS Chr4 23765638 T-C Hetero INTERGENIC
SBS Chr4 25028498 C-T Hetero INTERGENIC
SBS Chr4 25735360 G-T Hetero INTRON
SBS Chr4 28139315 T-G Hetero INTERGENIC
SBS Chr4 31436033 C-A Hetero INTERGENIC
SBS Chr4 36124837 T-C Hetero INTERGENIC
SBS Chr5 14308879 G-A Hetero INTERGENIC
SBS Chr5 28636095 T-C Hetero INTERGENIC
SBS Chr6 482961 C-T Hetero INTERGENIC
SBS Chr6 3458521 G-C Hetero INTERGENIC
SBS Chr6 15865010 A-T Hetero INTERGENIC
SBS Chr6 15865011 T-A Hetero INTERGENIC
SBS Chr6 19713191 C-A Hetero UTR_3_PRIME
SBS Chr7 7041363 T-C Hetero INTERGENIC
SBS Chr7 8456664 C-T Hetero INTERGENIC
SBS Chr7 18635158 G-A Homo INTERGENIC
SBS Chr7 23547387 G-A Homo INTERGENIC
SBS Chr7 26709105 A-G Homo INTERGENIC
SBS Chr7 27917858 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g261800
SBS Chr8 8724872 T-C Hetero INTERGENIC
SBS Chr8 17742549 T-C Hetero INTERGENIC
SBS Chr8 20756529 C-A Hetero INTERGENIC
SBS Chr8 24055449 A-T Homo INTERGENIC
SBS Chr9 1959077 C-T Hetero INTERGENIC
SBS Chr9 2700085 G-T Hetero INTERGENIC
SBS Chr9 4486608 T-C Hetero INTERGENIC
SBS Chr9 15667411 C-T Hetero INTERGENIC
SBS Chr9 17218853 T-C Homo INTERGENIC
SBS Chr9 22191306 T-C Hetero INTERGENIC
SBS Chr10 3409790 G-C Homo INTERGENIC
SBS Chr10 7185862 A-G Homo INTERGENIC
SBS Chr10 9553229 C-T Homo INTRON
SBS Chr10 10773559 A-G Homo INTERGENIC
SBS Chr10 12727339 T-A Homo INTRON
SBS Chr10 16696740 A-G Homo INTRON
SBS Chr10 21362210 C-A Homo INTERGENIC
SBS Chr10 22853774 G-T Homo UTR_5_PRIME
SBS Chr11 2332707 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g033750
SBS Chr11 14724720 G-T Hetero INTERGENIC
SBS Chr11 17582108 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g137800
SBS Chr11 17848977 T-A Hetero INTERGENIC
SBS Chr11 24208788 C-T Hetero INTERGENIC
SBS Chr11 28848044 C-T Hetero INTRON
SBS Chr12 6135098 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 11919201 G-C Hetero INTERGENIC
SBS Chr12 17830488 T-C Hetero INTERGENIC
SBS Chr12 21622715 C-T Hetero INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1043740 1043741 1 OsKitaake07g013800
Deletion Chr4 1643343 1643345 2 2
Deletion Chr12 1652162 1652168 6 2
Deletion Chr10 2657126 2657130 4 2
Deletion Chr2 2692212 2692215 3 2
Deletion Chr10 3417570 3417583 13 2
Deletion Chr2 3467823 3467828 5 2
Deletion Chr3 4298471 4298472 1 2
Deletion Chr1 7190587 7190589 2
Deletion Chr2 8139863 8139864 1 2
Deletion Chr2 8258796 8258797 1 2
Deletion Chr1 8607765 8607780 15 2
Deletion Chr3 10520963 10520965 2 2
Deletion Chr7 11568311 11568313 2
Deletion Chr7 13457245 13457250 5
Deletion Chr10 13982947 13982949 2 2
Deletion Chr8 15001996 15002002 6 2
Deletion Chr7 15305601 15305613 12 2
Deletion Chr7 15928816 15928828 12
Deletion Chr7 17246160 17246162 2 2
Deletion Chr5 17306224 17306237 13 2
Deletion Chr10 17716001 17735000 18999 2
Deletion Chr10 17718001 17735000 16999 2
Deletion Chr2 26239288 26239300 12 2
Deletion Chr6 26936027 26936029 2 2
Deletion Chr3 28422658 28422659 1

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10025337 10025340 2
Insertion Chr7 1725037 1725040 2
Insertion Chr8 23421230 23421233 2
Insertion Chr8 26682322 26682325 2
Insertion Chr9 12106969 12106972 2
Insertion Chr1 28350491 28350494 2
Insertion Chr1 28809984 28809992 7
Insertion Chr3 31629807 31629810 2
Insertion Chr4 3416809 3416812 2
Insertion Chr7 3463007 3463010 2
Insertion Chr2 6961503 6961505 1

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 13662766 Chr9 18394508
Translocation Chr10 13662770 Chr9 18393681 OsKitaake09g143700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1286012	A-G	Homo	INTERGENIC
SBS	Chr1	4266785	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	11937524	C-T	Hetero	INTERGENIC
SBS	Chr1	15895906	C-T	Homo	INTRON
SBS	Chr1	17373444	A-G	Homo	INTERGENIC
SBS	Chr1	17498160	T-G	Homo	INTERGENIC
SBS	Chr1	33899099	C-T	Hetero	INTERGENIC
SBS	Chr1	33999698	C-G	Hetero	INTERGENIC
SBS	Chr1	34797818	G-A	Hetero	INTERGENIC
SBS	Chr1	35267966	C-T	Hetero	INTERGENIC
SBS	Chr1	41927490	C-T	Hetero	INTERGENIC
SBS	Chr2	7260190	A-G	Homo	INTERGENIC
SBS	Chr2	7590866	G-C	Homo	INTRON
SBS	Chr2	24148466	A-T	Homo	INTRON
SBS	Chr2	26402277	A-C	Homo	INTRON
SBS	Chr2	34504799	C-T	Hetero	INTERGENIC
SBS	Chr3	2628916	G-A	Hetero	INTERGENIC
SBS	Chr3	5022597	G-A	Homo	INTERGENIC
SBS	Chr3	8836715	C-T	Homo	INTERGENIC
SBS	Chr3	15295744	C-T	Hetero	INTERGENIC
SBS	Chr3	21025983	A-T	Hetero	INTRON
SBS	Chr3	26532893	T-A	Hetero	INTERGENIC
SBS	Chr3	26532894	T-A	Hetero	INTERGENIC
SBS	Chr3	28503799	A-C	Hetero	INTRON
SBS	Chr3	32142481	T-C	Hetero	INTERGENIC
SBS	Chr3	34702239	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g377800
SBS	Chr3	36927728	G-A	Hetero	INTERGENIC
SBS	Chr4	5587225	A-T	Hetero	INTERGENIC
SBS	Chr4	25735360	G-T	Hetero	INTRON
SBS	Chr4	28139315	T-G	Hetero	INTERGENIC
SBS	Chr4	31436033	C-A	Hetero	INTERGENIC
SBS	Chr5	5346498	C-G	Hetero	INTERGENIC
SBS	Chr5	14308879	G-A	Hetero	INTERGENIC
SBS	Chr5	19202461	T-C	Hetero	INTERGENIC
SBS	Chr6	4024003	G-A	Hetero	INTERGENIC
SBS	Chr6	10172157	G-T	Hetero	INTERGENIC
SBS	Chr6	15865010	A-T	Hetero	INTERGENIC
SBS	Chr6	15865011	T-A	Hetero	INTERGENIC
SBS	Chr6	18155365	C-T	Hetero	INTERGENIC
SBS	Chr6	19713191	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	7041363	T-C	Hetero	INTERGENIC
SBS	Chr7	18635158	G-A	Homo	INTERGENIC
SBS	Chr7	23472990	C-T	Hetero	INTERGENIC
SBS	Chr7	23547387	G-A	Homo	INTERGENIC
SBS	Chr7	26709105	A-G	Homo	INTERGENIC
SBS	Chr7	27917858	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g261800
SBS	Chr8	8724872	T-C	Hetero	INTERGENIC
SBS	Chr8	17742549	T-C	Hetero	INTERGENIC
SBS	Chr8	21461058	C-T	Hetero	INTERGENIC
SBS	Chr8	24055449	A-T	Homo	INTERGENIC
SBS	Chr9	1915708	G-A	Hetero	INTERGENIC
SBS	Chr9	1959077	C-T	Hetero	INTERGENIC
SBS	Chr9	17218853	T-C	Homo	INTERGENIC
SBS	Chr9	22191306	T-C	Hetero	INTERGENIC
SBS	Chr10	3403688	C-T	Hetero	INTERGENIC
SBS	Chr10	3409790	G-C	Homo	INTERGENIC
SBS	Chr10	7185862	A-G	Homo	INTERGENIC
SBS	Chr10	9553229	C-T	Homo	INTRON
SBS	Chr10	10773559	A-G	Homo	INTERGENIC
SBS	Chr10	12727339	T-A	Homo	INTRON
SBS	Chr10	16696740	A-G	Homo	INTRON
SBS	Chr10	21362210	C-A	Homo	INTERGENIC
SBS	Chr10	22853774	G-T	Homo	UTR_5_PRIME
SBS	Chr11	2332707	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g033750
SBS	Chr11	14724720	G-T	Hetero	INTERGENIC
SBS	Chr11	17582108	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g137800
SBS	Chr11	22558407	C-G	Hetero	INTERGENIC
SBS	Chr11	24208788	C-T	Hetero	INTERGENIC
SBS	Chr12	3564045	C-T	Hetero	INTERGENIC
SBS	Chr12	6135098	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	11919201	G-C	Hetero	INTERGENIC
SBS	Chr12	21622715	C-T	Hetero	INTERGENIC
SBS	Chr1	1286012	A-G	Homo	INTERGENIC
SBS	Chr1	4266785	C-A	Hetero	UTR_5_PRIME
SBS	Chr1	11937524	C-T	Hetero	INTERGENIC
SBS	Chr1	15895906	C-T	Homo	INTRON
SBS	Chr1	17373444	A-G	Homo	INTERGENIC
SBS	Chr1	17498160	T-G	Homo	INTERGENIC
SBS	Chr1	33899099	C-T	Hetero	INTERGENIC
SBS	Chr1	33999698	C-G	Hetero	INTERGENIC
SBS	Chr1	35020891	A-C	Hetero	INTRON
SBS	Chr1	35267966	C-T	Hetero	INTERGENIC
SBS	Chr1	41927490	C-T	Hetero	INTERGENIC
SBS	Chr2	7260190	A-G	Homo	INTERGENIC
SBS	Chr2	7590866	G-C	Homo	INTRON
SBS	Chr2	16060394	G-A	Hetero	INTERGENIC
SBS	Chr2	24148466	A-T	Homo	INTRON
SBS	Chr2	26402277	A-C	Homo	INTRON
SBS	Chr2	34504799	C-T	Hetero	INTERGENIC
SBS	Chr3	2628916	G-A	Hetero	INTERGENIC
SBS	Chr3	5022597	G-A	Homo	INTERGENIC
SBS	Chr3	8836715	C-T	Homo	INTERGENIC
SBS	Chr3	15295744	C-T	Hetero	INTERGENIC
SBS	Chr3	21025983	A-T	Hetero	INTRON
SBS	Chr3	26532893	T-A	Hetero	INTERGENIC
SBS	Chr3	26532894	T-A	Hetero	INTERGENIC
SBS	Chr3	27986896	C-A	Hetero	INTERGENIC
SBS	Chr3	28503799	A-C	Hetero	INTRON
SBS	Chr3	32142481	T-C	Hetero	INTERGENIC
SBS	Chr4	14077707	A-T	Hetero	INTERGENIC
SBS	Chr4	23765638	T-C	Hetero	INTERGENIC
SBS	Chr4	25028498	C-T	Hetero	INTERGENIC
SBS	Chr4	25735360	G-T	Hetero	INTRON
SBS	Chr4	28139315	T-G	Hetero	INTERGENIC
SBS	Chr4	31436033	C-A	Hetero	INTERGENIC
SBS	Chr4	36124837	T-C	Hetero	INTERGENIC
SBS	Chr5	14308879	G-A	Hetero	INTERGENIC
SBS	Chr5	28636095	T-C	Hetero	INTERGENIC
SBS	Chr6	482961	C-T	Hetero	INTERGENIC
SBS	Chr6	3458521	G-C	Hetero	INTERGENIC
SBS	Chr6	15865010	A-T	Hetero	INTERGENIC
SBS	Chr6	15865011	T-A	Hetero	INTERGENIC
SBS	Chr6	19713191	C-A	Hetero	UTR_3_PRIME
SBS	Chr7	7041363	T-C	Hetero	INTERGENIC
SBS	Chr7	8456664	C-T	Hetero	INTERGENIC
SBS	Chr7	18635158	G-A	Homo	INTERGENIC
SBS	Chr7	23547387	G-A	Homo	INTERGENIC
SBS	Chr7	26709105	A-G	Homo	INTERGENIC
SBS	Chr7	27917858	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g261800
SBS	Chr8	8724872	T-C	Hetero	INTERGENIC
SBS	Chr8	17742549	T-C	Hetero	INTERGENIC
SBS	Chr8	20756529	C-A	Hetero	INTERGENIC
SBS	Chr8	24055449	A-T	Homo	INTERGENIC
SBS	Chr9	1959077	C-T	Hetero	INTERGENIC
SBS	Chr9	2700085	G-T	Hetero	INTERGENIC
SBS	Chr9	4486608	T-C	Hetero	INTERGENIC
SBS	Chr9	15667411	C-T	Hetero	INTERGENIC
SBS	Chr9	17218853	T-C	Homo	INTERGENIC
SBS	Chr9	22191306	T-C	Hetero	INTERGENIC
SBS	Chr10	3409790	G-C	Homo	INTERGENIC
SBS	Chr10	7185862	A-G	Homo	INTERGENIC
SBS	Chr10	9553229	C-T	Homo	INTRON
SBS	Chr10	10773559	A-G	Homo	INTERGENIC
SBS	Chr10	12727339	T-A	Homo	INTRON
SBS	Chr10	16696740	A-G	Homo	INTRON
SBS	Chr10	21362210	C-A	Homo	INTERGENIC
SBS	Chr10	22853774	G-T	Homo	UTR_5_PRIME
SBS	Chr11	2332707	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g033750
SBS	Chr11	14724720	G-T	Hetero	INTERGENIC
SBS	Chr11	17582108	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g137800
SBS	Chr11	17848977	T-A	Hetero	INTERGENIC
SBS	Chr11	24208788	C-T	Hetero	INTERGENIC
SBS	Chr11	28848044	C-T	Hetero	INTRON
SBS	Chr12	6135098	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	11919201	G-C	Hetero	INTERGENIC
SBS	Chr12	17830488	T-C	Hetero	INTERGENIC
SBS	Chr12	21622715	C-T	Hetero	INTERGENIC

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Variant Type

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Position

Change

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Effect

Gene Affected

Variant Type

Chromosome

Start

End

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Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes