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Mutant Information

Mutant Name	FN2726-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2726-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 47

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18128917 G-A Hetero UTR_3_PRIME
SBS Chr1 21913354 A-T Homo INTERGENIC
SBS Chr1 21916722 C-T Homo INTERGENIC
SBS Chr1 23269700 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g222400
SBS Chr1 29230785 C-T Hetero INTERGENIC
SBS Chr1 36157090 G-T Hetero INTERGENIC
SBS Chr1 37527082 A-G Hetero INTRON
SBS Chr1 42661085 G-T Homo SYNONYMOUS_CODING
SBS Chr1 42810914 T-A Homo INTERGENIC
SBS Chr2 5470131 G-T Homo SYNONYMOUS_CODING
SBS Chr2 10715573 C-T Homo UTR_5_PRIME
SBS Chr2 13197971 C-T Homo INTERGENIC
SBS Chr2 16043755 C-T Homo INTERGENIC
SBS Chr2 34530035 C-T Hetero INTERGENIC
SBS Chr3 2592591 A-T Homo INTERGENIC
SBS Chr3 3050477 A-C Homo INTERGENIC
SBS Chr3 27526143 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g284300
SBS Chr3 30481127 A-C Hetero INTERGENIC
SBS Chr3 31265831 T-A Hetero INTERGENIC
SBS Chr3 32968671 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g350400
SBS Chr3 36165631 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g400200
SBS Chr3 36165633 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g400200
SBS Chr4 14702447 A-T Hetero INTERGENIC
SBS Chr4 16632671 G-A Hetero INTERGENIC
SBS Chr4 22920975 A-G Hetero INTERGENIC
SBS Chr4 23952907 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g151401
SBS Chr5 15846382 A-G Hetero INTERGENIC
SBS Chr5 21942560 A-G Homo NON_SYNONYMOUS_CODING OsKitaake05g179000
SBS Chr6 13733013 A-T Homo INTRON
SBS Chr6 23914584 T-C Homo UTR_3_PRIME
SBS Chr7 10603794 A-T Homo INTRON
SBS Chr7 10622364 A-C Homo INTERGENIC
SBS Chr7 19476933 T-C Homo UTR_3_PRIME
SBS Chr8 3443068 C-T Hetero INTERGENIC
SBS Chr8 6486045 C-T Homo INTERGENIC
SBS Chr8 8993930 G-A Homo INTERGENIC
SBS Chr8 18435595 A-C Homo INTERGENIC
SBS Chr8 22298121 A-C Hetero INTERGENIC
SBS Chr9 448286 C-T Homo INTRON
SBS Chr10 4638455 T-A Hetero INTERGENIC
SBS Chr10 4638456 A-T Hetero INTERGENIC
SBS Chr10 11641243 T-A Hetero INTERGENIC
SBS Chr10 12104173 A-T Hetero INTERGENIC
SBS Chr10 12934959 T-C Hetero INTERGENIC
SBS Chr11 9515293 A-G Homo INTERGENIC
SBS Chr12 14039386 C-T Hetero INTERGENIC
SBS Chr12 26826734 C-A Homo INTERGENIC

Deletions: 34

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1563921 1563923 2
Deletion Chr8 2370617 2370619 2
Deletion Chr6 2525663 2525677 14
Deletion Chr8 6002673 6002675 2
Deletion Chr10 7353027 7353056 29
Deletion Chr1 8026674 8026681 7
Deletion Chr10 8810269 8810278 9
Deletion Chr3 9565431 9565432 1
Deletion Chr12 10845430 10845433 3
Deletion Chr5 12133738 12133739 1
Deletion Chr1 12605799 12605807 8
Deletion Chr8 12880606 12880635 29
Deletion Chr3 13005259 13005261 2
Deletion Chr1 14066491 14066502 11
Deletion Chr10 14459031 14459032 1
Deletion Chr6 15802441 15802442 1
Deletion Chr11 17365842 17365843 1
Deletion Chr3 17825469 17825471 2
Deletion Chr3 18748803 18748811 8
Deletion Chr7 19522554 19522556 2 OsKitaake07g158300
Deletion Chr2 20513373 20513380 7
Deletion Chr11 21808230 21808231 1
Deletion Chr4 23499612 23499614 2
Deletion Chr2 24213188 24213202 14
Deletion Chr11 25175620 25175622 2
Deletion Chr2 25578027 25578044 17 OsKitaake02g252800
Deletion Chr3 28367001 28396000 28999 10
Deletion Chr4 29182536 29182537 1
Deletion Chr11 29665581 29665582 1
Deletion Chr2 31062301 31062307 6
Deletion Chr2 34392315 34392317 2
Deletion Chr3 34941478 34941482 4
Deletion Chr3 35049193 35049203 10
Deletion Chr3 36167037 36167039 2

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7947363 7947366 2
Insertion Chr2 1347710 1347714 3
Insertion Chr4 26154734 26154739 4
Insertion Chr5 6731649 6731652 2
Insertion Chr5 21888885 21888888 2
Insertion Chr7 28346703 28346706 2
Insertion Chr8 13506199 13506218 18
Insertion Chr9 19415404 19415407 2
Insertion Chr11 19013479 19013489 9

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18128917	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	21913354	A-T	Homo	INTERGENIC
SBS	Chr1	21916722	C-T	Homo	INTERGENIC
SBS	Chr1	23269700	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g222400
SBS	Chr1	29230785	C-T	Hetero	INTERGENIC
SBS	Chr1	36157090	G-T	Hetero	INTERGENIC
SBS	Chr1	37527082	A-G	Hetero	INTRON
SBS	Chr1	42661085	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	42810914	T-A	Homo	INTERGENIC
SBS	Chr2	5470131	G-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	10715573	C-T	Homo	UTR_5_PRIME
SBS	Chr2	13197971	C-T	Homo	INTERGENIC
SBS	Chr2	16043755	C-T	Homo	INTERGENIC
SBS	Chr2	34530035	C-T	Hetero	INTERGENIC
SBS	Chr3	2592591	A-T	Homo	INTERGENIC
SBS	Chr3	3050477	A-C	Homo	INTERGENIC
SBS	Chr3	27526143	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g284300
SBS	Chr3	30481127	A-C	Hetero	INTERGENIC
SBS	Chr3	31265831	T-A	Hetero	INTERGENIC
SBS	Chr3	32968671	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g350400
SBS	Chr3	36165631	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g400200
SBS	Chr3	36165633	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g400200
SBS	Chr4	14702447	A-T	Hetero	INTERGENIC
SBS	Chr4	16632671	G-A	Hetero	INTERGENIC
SBS	Chr4	22920975	A-G	Hetero	INTERGENIC
SBS	Chr4	23952907	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g151401
SBS	Chr5	15846382	A-G	Hetero	INTERGENIC
SBS	Chr5	21942560	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g179000
SBS	Chr6	13733013	A-T	Homo	INTRON
SBS	Chr6	23914584	T-C	Homo	UTR_3_PRIME
SBS	Chr7	10603794	A-T	Homo	INTRON
SBS	Chr7	10622364	A-C	Homo	INTERGENIC
SBS	Chr7	19476933	T-C	Homo	UTR_3_PRIME
SBS	Chr8	3443068	C-T	Hetero	INTERGENIC
SBS	Chr8	6486045	C-T	Homo	INTERGENIC
SBS	Chr8	8993930	G-A	Homo	INTERGENIC
SBS	Chr8	18435595	A-C	Homo	INTERGENIC
SBS	Chr8	22298121	A-C	Hetero	INTERGENIC
SBS	Chr9	448286	C-T	Homo	INTRON
SBS	Chr10	4638455	T-A	Hetero	INTERGENIC
SBS	Chr10	4638456	A-T	Hetero	INTERGENIC
SBS	Chr10	11641243	T-A	Hetero	INTERGENIC
SBS	Chr10	12104173	A-T	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Hetero	INTERGENIC
SBS	Chr11	9515293	A-G	Homo	INTERGENIC
SBS	Chr12	14039386	C-T	Hetero	INTERGENIC
SBS	Chr12	26826734	C-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1563921	1563923	2
Deletion	Chr8	2370617	2370619	2
Deletion	Chr6	2525663	2525677	14
Deletion	Chr8	6002673	6002675	2
Deletion	Chr10	7353027	7353056	29
Deletion	Chr1	8026674	8026681	7
Deletion	Chr10	8810269	8810278	9
Deletion	Chr3	9565431	9565432	1
Deletion	Chr12	10845430	10845433	3
Deletion	Chr5	12133738	12133739	1
Deletion	Chr1	12605799	12605807	8
Deletion	Chr8	12880606	12880635	29
Deletion	Chr3	13005259	13005261	2
Deletion	Chr1	14066491	14066502	11
Deletion	Chr10	14459031	14459032	1
Deletion	Chr6	15802441	15802442	1
Deletion	Chr11	17365842	17365843	1
Deletion	Chr3	17825469	17825471	2
Deletion	Chr3	18748803	18748811	8
Deletion	Chr7	19522554	19522556	2	OsKitaake07g158300
Deletion	Chr2	20513373	20513380	7
Deletion	Chr11	21808230	21808231	1
Deletion	Chr4	23499612	23499614	2
Deletion	Chr2	24213188	24213202	14
Deletion	Chr11	25175620	25175622	2
Deletion	Chr2	25578027	25578044	17	OsKitaake02g252800
Deletion	Chr3	28367001	28396000	28999	10
Deletion	Chr4	29182536	29182537	1
Deletion	Chr11	29665581	29665582	1
Deletion	Chr2	31062301	31062307	6
Deletion	Chr2	34392315	34392317	2
Deletion	Chr3	34941478	34941482	4
Deletion	Chr3	35049193	35049203	10
Deletion	Chr3	36167037	36167039	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes