Search Kitaake

Mutant Information

Mutant Name	FN2729-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2729-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 124

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22171163 G-A Hetero INTERGENIC
SBS Chr1 25282768 T-C Homo INTRON
SBS Chr1 29765450 C-T Homo INTERGENIC
SBS Chr2 3222702 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g046500
SBS Chr2 14127133 G-T Hetero INTRON
SBS Chr2 16427708 C-A Hetero INTERGENIC
SBS Chr2 33253035 T-A Hetero INTERGENIC
SBS Chr3 11802141 A-C Homo INTRON
SBS Chr3 11802142 C-A Homo INTRON
SBS Chr3 20273094 G-T Hetero INTERGENIC
SBS Chr3 26776751 C-T Homo INTERGENIC
SBS Chr3 35350441 G-A Hetero INTERGENIC
SBS Chr3 36628282 C-A Hetero INTERGENIC
SBS Chr4 16125734 C-T Homo INTERGENIC
SBS Chr4 16322695 C-T Hetero INTERGENIC
SBS Chr4 20423344 C-T Hetero INTERGENIC
SBS Chr4 23974899 C-A Hetero INTERGENIC
SBS Chr4 24243479 T-G Hetero INTRON
SBS Chr4 26983338 A-T Hetero INTRON
SBS Chr4 31231320 T-A Hetero INTERGENIC
SBS Chr4 31231321 C-A Hetero INTERGENIC
SBS Chr5 3848813 C-T Homo INTERGENIC
SBS Chr5 5638813 A-T Hetero INTERGENIC
SBS Chr5 6470468 T-A Hetero INTERGENIC
SBS Chr5 6470469 C-A Hetero INTERGENIC
SBS Chr5 9676502 C-A Hetero INTERGENIC
SBS Chr5 10400436 G-T Hetero INTERGENIC
SBS Chr5 10652167 C-T Hetero INTERGENIC
SBS Chr5 26576189 A-C Hetero INTERGENIC
SBS Chr6 7947143 T-A Homo INTERGENIC
SBS Chr6 15320347 C-T Hetero INTERGENIC
SBS Chr6 22058353 T-C Hetero INTRON
SBS Chr6 27440825 A-T Hetero INTRON
SBS Chr7 7849844 T-A Hetero INTERGENIC
SBS Chr7 7849845 G-A Hetero INTERGENIC
SBS Chr7 7850492 C-A Hetero INTERGENIC
SBS Chr7 7850493 T-A Hetero INTERGENIC
SBS Chr7 16348046 T-C Homo INTERGENIC
SBS Chr7 18802164 G-T Homo INTERGENIC
SBS Chr7 19697789 C-T Homo SYNONYMOUS_CODING
SBS Chr7 20259202 G-A Hetero INTRON
SBS Chr7 26084169 G-A Homo INTERGENIC
SBS Chr8 12181917 G-A Hetero INTERGENIC
SBS Chr8 12210789 G-C Hetero INTERGENIC
SBS Chr8 17677837 G-T Hetero INTRON
SBS Chr9 3985844 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g021600
SBS Chr9 4148802 T-A Hetero INTERGENIC
SBS Chr9 5078862 T-C Hetero INTERGENIC
SBS Chr9 5545187 C-T Hetero INTERGENIC
SBS Chr9 6873518 G-T Hetero INTERGENIC
SBS Chr9 8320755 G-A Homo INTERGENIC
SBS Chr9 8523919 C-T Hetero INTERGENIC
SBS Chr9 9388002 T-C Homo INTERGENIC
SBS Chr9 17494288 C-T Hetero INTRON
SBS Chr9 19969539 G-A Homo INTERGENIC
SBS Chr10 4964088 C-G Hetero INTERGENIC
SBS Chr10 6574725 A-G Hetero INTERGENIC
SBS Chr10 7969324 G-A Hetero INTERGENIC
SBS Chr10 7984808 C-T Hetero INTERGENIC
SBS Chr10 12007316 T-C Hetero INTERGENIC
SBS Chr10 12243745 G-A Hetero INTERGENIC
SBS Chr10 15722539 C-A Hetero INTERGENIC
SBS Chr10 21748443 C-G Hetero INTERGENIC
SBS Chr11 910517 A-T Hetero INTERGENIC
SBS Chr11 6585247 T-C Hetero INTERGENIC
SBS Chr11 15876991 T-A Homo INTERGENIC
SBS Chr11 19644760 C-T Hetero INTERGENIC
SBS Chr11 26506785 T-A Hetero INTERGENIC
SBS Chr12 7617990 G-A Hetero INTERGENIC
SBS Chr12 7863678 G-A Hetero INTERGENIC
SBS Chr12 9431583 T-A Hetero INTERGENIC
SBS Chr12 10945721 G-A Hetero SYNONYMOUS_STOP
SBS Chr12 11103798 G-C Hetero INTERGENIC
SBS Chr12 16871819 G-A Hetero INTERGENIC
SBS Chr12 18100359 G-A Homo INTERGENIC
SBS Chr1 25282768 T-C Homo INTRON
SBS Chr2 3222702 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g046500
SBS Chr2 10143360 A-T Hetero INTERGENIC
SBS Chr2 14127133 G-T Hetero INTRON
SBS Chr3 11802141 A-C Homo INTRON
SBS Chr3 11802142 C-A Homo INTRON
SBS Chr3 26776751 C-T Homo INTERGENIC
SBS Chr3 26779643 T-C Hetero INTERGENIC
SBS Chr3 35350441 G-A Hetero INTERGENIC
SBS Chr4 20423344 C-T Hetero INTERGENIC
SBS Chr4 23974899 C-A Hetero INTERGENIC
SBS Chr4 24243479 T-G Hetero INTRON
SBS Chr4 26983338 A-T Hetero INTRON
SBS Chr4 31231320 T-A Hetero INTERGENIC
SBS Chr4 31231321 C-A Hetero INTERGENIC
SBS Chr5 5638813 A-T Hetero INTERGENIC
SBS Chr5 6470468 T-A Hetero INTERGENIC
SBS Chr5 6470469 C-A Hetero INTERGENIC
SBS Chr5 9676502 C-A Hetero INTERGENIC
SBS Chr5 26576189 A-C Hetero INTERGENIC
SBS Chr6 7947143 T-A Homo INTERGENIC
SBS Chr6 27440825 A-T Hetero INTRON
SBS Chr7 7849844 T-A Hetero INTERGENIC
SBS Chr7 7849845 G-A Hetero INTERGENIC
SBS Chr7 7849846 G-A Hetero INTERGENIC
SBS Chr7 7850492 C-A Hetero INTERGENIC
SBS Chr7 7850493 T-A Hetero INTERGENIC
SBS Chr7 16348046 T-C Homo INTERGENIC
SBS Chr7 18802164 G-T Homo INTERGENIC
SBS Chr7 19697789 C-T Homo SYNONYMOUS_CODING
SBS Chr7 26084169 G-A Homo INTERGENIC
SBS Chr8 17677837 G-T Hetero INTRON
SBS Chr9 4148802 T-A Hetero INTERGENIC
SBS Chr9 5078862 T-C Hetero INTERGENIC
SBS Chr9 8320755 G-A Homo INTERGENIC
SBS Chr9 9388002 T-C Homo INTERGENIC
SBS Chr9 19969539 G-A Homo INTERGENIC
SBS Chr10 4964088 C-G Hetero INTERGENIC
SBS Chr10 7969324 G-A Hetero INTERGENIC
SBS Chr10 12007316 T-C Hetero INTERGENIC
SBS Chr10 12243745 G-A Hetero INTERGENIC
SBS Chr11 910517 A-T Hetero INTERGENIC
SBS Chr11 10182740 G-A Hetero INTERGENIC
SBS Chr11 15876991 T-A Homo INTERGENIC
SBS Chr11 26506785 T-A Hetero INTERGENIC
SBS Chr12 7617990 G-A Hetero INTERGENIC
SBS Chr12 10945721 G-A Hetero SYNONYMOUS_STOP
SBS Chr12 11103798 G-C Hetero INTERGENIC
SBS Chr12 18100359 G-A Homo INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2666001 3131000 464999 40
Deletion Chr10 2667001 3134000 466999 41
Deletion Chr9 5675139 5675149 10
Deletion Chr1 5818425 5818427 2
Deletion Chr7 5908564 5908575 11
Deletion Chr10 6668797 6668809 12
Deletion Chr8 7518843 7518844 1
Deletion Chr9 8119370 8119375 5 2
Deletion Chr11 9832655 9832661 6 2
Deletion Chr9 11394397 11394401 4 2
Deletion Chr3 12981467 12981472 5 2
Deletion Chr2 13665001 13678000 12999 OsKitaake02g150200
Deletion Chr1 13684134 13684135 1
Deletion Chr8 14397794 14397798 4 2
Deletion Chr5 16272089 16272091 2 2
Deletion Chr4 19435001 19449000 13999 OsKitaake04g099601
Deletion Chr4 19469754 19469755 1
Deletion Chr5 19905754 19905758 4
Deletion Chr12 22964158 22964162 4 2
Deletion Chr12 24365893 24365901 8 2
Deletion Chr8 28506548 28506550 2
Deletion Chr8 28604438 28604440 2
Deletion Chr1 29011718 29011720 2
Deletion Chr4 30646239 30646241 2
Deletion Chr1 34902001 35106000 203999 23
Deletion Chr1 35108001 35193000 84999 15
Deletion Chr1 36233832 36233836 4
Deletion Chr1 37767001 37784000 16999 4
Deletion Chr1 37768001 37784000 15999 3
Deletion Chr1 38914806 38914807 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3635584 3635589 4
Insertion Chr3 30082250 30082253 2
Insertion Chr10 774686 774689 2
Insertion Chr11 7814990 7814993 2
Insertion Chr12 19828679 19828682 2
Insertion Chr1 22310770 22310774 3
Insertion Chr4 11797656 11797659 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 6271054 6854404

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 26494863 Chr10 9789839
Translocation Chr11 26495207 Chr10 4172828

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22171163	G-A	Hetero	INTERGENIC
SBS	Chr1	25282768	T-C	Homo	INTRON
SBS	Chr1	29765450	C-T	Homo	INTERGENIC
SBS	Chr2	3222702	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g046500
SBS	Chr2	14127133	G-T	Hetero	INTRON
SBS	Chr2	16427708	C-A	Hetero	INTERGENIC
SBS	Chr2	33253035	T-A	Hetero	INTERGENIC
SBS	Chr3	11802141	A-C	Homo	INTRON
SBS	Chr3	11802142	C-A	Homo	INTRON
SBS	Chr3	20273094	G-T	Hetero	INTERGENIC
SBS	Chr3	26776751	C-T	Homo	INTERGENIC
SBS	Chr3	35350441	G-A	Hetero	INTERGENIC
SBS	Chr3	36628282	C-A	Hetero	INTERGENIC
SBS	Chr4	16125734	C-T	Homo	INTERGENIC
SBS	Chr4	16322695	C-T	Hetero	INTERGENIC
SBS	Chr4	20423344	C-T	Hetero	INTERGENIC
SBS	Chr4	23974899	C-A	Hetero	INTERGENIC
SBS	Chr4	24243479	T-G	Hetero	INTRON
SBS	Chr4	26983338	A-T	Hetero	INTRON
SBS	Chr4	31231320	T-A	Hetero	INTERGENIC
SBS	Chr4	31231321	C-A	Hetero	INTERGENIC
SBS	Chr5	3848813	C-T	Homo	INTERGENIC
SBS	Chr5	5638813	A-T	Hetero	INTERGENIC
SBS	Chr5	6470468	T-A	Hetero	INTERGENIC
SBS	Chr5	6470469	C-A	Hetero	INTERGENIC
SBS	Chr5	9676502	C-A	Hetero	INTERGENIC
SBS	Chr5	10400436	G-T	Hetero	INTERGENIC
SBS	Chr5	10652167	C-T	Hetero	INTERGENIC
SBS	Chr5	26576189	A-C	Hetero	INTERGENIC
SBS	Chr6	7947143	T-A	Homo	INTERGENIC
SBS	Chr6	15320347	C-T	Hetero	INTERGENIC
SBS	Chr6	22058353	T-C	Hetero	INTRON
SBS	Chr6	27440825	A-T	Hetero	INTRON
SBS	Chr7	7849844	T-A	Hetero	INTERGENIC
SBS	Chr7	7849845	G-A	Hetero	INTERGENIC
SBS	Chr7	7850492	C-A	Hetero	INTERGENIC
SBS	Chr7	7850493	T-A	Hetero	INTERGENIC
SBS	Chr7	16348046	T-C	Homo	INTERGENIC
SBS	Chr7	18802164	G-T	Homo	INTERGENIC
SBS	Chr7	19697789	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	20259202	G-A	Hetero	INTRON
SBS	Chr7	26084169	G-A	Homo	INTERGENIC
SBS	Chr8	12181917	G-A	Hetero	INTERGENIC
SBS	Chr8	12210789	G-C	Hetero	INTERGENIC
SBS	Chr8	17677837	G-T	Hetero	INTRON
SBS	Chr9	3985844	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g021600
SBS	Chr9	4148802	T-A	Hetero	INTERGENIC
SBS	Chr9	5078862	T-C	Hetero	INTERGENIC
SBS	Chr9	5545187	C-T	Hetero	INTERGENIC
SBS	Chr9	6873518	G-T	Hetero	INTERGENIC
SBS	Chr9	8320755	G-A	Homo	INTERGENIC
SBS	Chr9	8523919	C-T	Hetero	INTERGENIC
SBS	Chr9	9388002	T-C	Homo	INTERGENIC
SBS	Chr9	17494288	C-T	Hetero	INTRON
SBS	Chr9	19969539	G-A	Homo	INTERGENIC
SBS	Chr10	4964088	C-G	Hetero	INTERGENIC
SBS	Chr10	6574725	A-G	Hetero	INTERGENIC
SBS	Chr10	7969324	G-A	Hetero	INTERGENIC
SBS	Chr10	7984808	C-T	Hetero	INTERGENIC
SBS	Chr10	12007316	T-C	Hetero	INTERGENIC
SBS	Chr10	12243745	G-A	Hetero	INTERGENIC
SBS	Chr10	15722539	C-A	Hetero	INTERGENIC
SBS	Chr10	21748443	C-G	Hetero	INTERGENIC
SBS	Chr11	910517	A-T	Hetero	INTERGENIC
SBS	Chr11	6585247	T-C	Hetero	INTERGENIC
SBS	Chr11	15876991	T-A	Homo	INTERGENIC
SBS	Chr11	19644760	C-T	Hetero	INTERGENIC
SBS	Chr11	26506785	T-A	Hetero	INTERGENIC
SBS	Chr12	7617990	G-A	Hetero	INTERGENIC
SBS	Chr12	7863678	G-A	Hetero	INTERGENIC
SBS	Chr12	9431583	T-A	Hetero	INTERGENIC
SBS	Chr12	10945721	G-A	Hetero	SYNONYMOUS_STOP
SBS	Chr12	11103798	G-C	Hetero	INTERGENIC
SBS	Chr12	16871819	G-A	Hetero	INTERGENIC
SBS	Chr12	18100359	G-A	Homo	INTERGENIC
SBS	Chr1	25282768	T-C	Homo	INTRON
SBS	Chr2	3222702	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g046500
SBS	Chr2	10143360	A-T	Hetero	INTERGENIC
SBS	Chr2	14127133	G-T	Hetero	INTRON
SBS	Chr3	11802141	A-C	Homo	INTRON
SBS	Chr3	11802142	C-A	Homo	INTRON
SBS	Chr3	26776751	C-T	Homo	INTERGENIC
SBS	Chr3	26779643	T-C	Hetero	INTERGENIC
SBS	Chr3	35350441	G-A	Hetero	INTERGENIC
SBS	Chr4	20423344	C-T	Hetero	INTERGENIC
SBS	Chr4	23974899	C-A	Hetero	INTERGENIC
SBS	Chr4	24243479	T-G	Hetero	INTRON
SBS	Chr4	26983338	A-T	Hetero	INTRON
SBS	Chr4	31231320	T-A	Hetero	INTERGENIC
SBS	Chr4	31231321	C-A	Hetero	INTERGENIC
SBS	Chr5	5638813	A-T	Hetero	INTERGENIC
SBS	Chr5	6470468	T-A	Hetero	INTERGENIC
SBS	Chr5	6470469	C-A	Hetero	INTERGENIC
SBS	Chr5	9676502	C-A	Hetero	INTERGENIC
SBS	Chr5	26576189	A-C	Hetero	INTERGENIC
SBS	Chr6	7947143	T-A	Homo	INTERGENIC
SBS	Chr6	27440825	A-T	Hetero	INTRON
SBS	Chr7	7849844	T-A	Hetero	INTERGENIC
SBS	Chr7	7849845	G-A	Hetero	INTERGENIC
SBS	Chr7	7849846	G-A	Hetero	INTERGENIC
SBS	Chr7	7850492	C-A	Hetero	INTERGENIC
SBS	Chr7	7850493	T-A	Hetero	INTERGENIC
SBS	Chr7	16348046	T-C	Homo	INTERGENIC
SBS	Chr7	18802164	G-T	Homo	INTERGENIC
SBS	Chr7	19697789	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr7	26084169	G-A	Homo	INTERGENIC
SBS	Chr8	17677837	G-T	Hetero	INTRON
SBS	Chr9	4148802	T-A	Hetero	INTERGENIC
SBS	Chr9	5078862	T-C	Hetero	INTERGENIC
SBS	Chr9	8320755	G-A	Homo	INTERGENIC
SBS	Chr9	9388002	T-C	Homo	INTERGENIC
SBS	Chr9	19969539	G-A	Homo	INTERGENIC
SBS	Chr10	4964088	C-G	Hetero	INTERGENIC
SBS	Chr10	7969324	G-A	Hetero	INTERGENIC
SBS	Chr10	12007316	T-C	Hetero	INTERGENIC
SBS	Chr10	12243745	G-A	Hetero	INTERGENIC
SBS	Chr11	910517	A-T	Hetero	INTERGENIC
SBS	Chr11	10182740	G-A	Hetero	INTERGENIC
SBS	Chr11	15876991	T-A	Homo	INTERGENIC
SBS	Chr11	26506785	T-A	Hetero	INTERGENIC
SBS	Chr12	7617990	G-A	Hetero	INTERGENIC
SBS	Chr12	10945721	G-A	Hetero	SYNONYMOUS_STOP
SBS	Chr12	11103798	G-C	Hetero	INTERGENIC
SBS	Chr12	18100359	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2666001	3131000	464999	40
Deletion	Chr10	2667001	3134000	466999	41
Deletion	Chr9	5675139	5675149	10
Deletion	Chr1	5818425	5818427	2
Deletion	Chr7	5908564	5908575	11
Deletion	Chr10	6668797	6668809	12
Deletion	Chr8	7518843	7518844	1
Deletion	Chr9	8119370	8119375	5	2
Deletion	Chr11	9832655	9832661	6	2
Deletion	Chr9	11394397	11394401	4	2
Deletion	Chr3	12981467	12981472	5	2
Deletion	Chr2	13665001	13678000	12999	OsKitaake02g150200
Deletion	Chr1	13684134	13684135	1
Deletion	Chr8	14397794	14397798	4	2
Deletion	Chr5	16272089	16272091	2	2
Deletion	Chr4	19435001	19449000	13999	OsKitaake04g099601
Deletion	Chr4	19469754	19469755	1
Deletion	Chr5	19905754	19905758	4
Deletion	Chr12	22964158	22964162	4	2
Deletion	Chr12	24365893	24365901	8	2
Deletion	Chr8	28506548	28506550	2
Deletion	Chr8	28604438	28604440	2
Deletion	Chr1	29011718	29011720	2
Deletion	Chr4	30646239	30646241	2
Deletion	Chr1	34902001	35106000	203999	23
Deletion	Chr1	35108001	35193000	84999	15
Deletion	Chr1	36233832	36233836	4
Deletion	Chr1	37767001	37784000	16999	4
Deletion	Chr1	37768001	37784000	15999	3
Deletion	Chr1	38914806	38914807	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	6271054	6854404

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes