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Mutant Information

Mutant Name	FN2730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2730-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2182282 T-C Hetero INTERGENIC
SBS Chr1 19359156 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g193400
SBS Chr1 21851615 G-A Hetero INTERGENIC
SBS Chr1 27313207 G-T Hetero INTERGENIC
SBS Chr1 36146457 A-G Hetero INTRON
SBS Chr1 40188283 G-A Homo INTERGENIC
SBS Chr2 11536698 G-T Homo INTERGENIC
SBS Chr2 15496399 T-A Homo INTERGENIC
SBS Chr3 19493549 G-A Homo INTERGENIC
SBS Chr3 23235295 C-T Homo SYNONYMOUS_CODING
SBS Chr3 23257857 C-A Homo INTERGENIC
SBS Chr4 4855212 T-C Hetero INTERGENIC
SBS Chr4 8151422 G-C Hetero INTRON
SBS Chr4 15825704 T-A Hetero INTERGENIC
SBS Chr4 28872788 G-A Hetero INTERGENIC
SBS Chr5 5950410 G-A Hetero INTERGENIC
SBS Chr5 13075903 A-G Hetero INTRON
SBS Chr5 15820178 T-C Hetero INTERGENIC
SBS Chr5 22672752 A-T Homo INTERGENIC
SBS Chr5 26529081 T-C Hetero INTERGENIC
SBS Chr6 24812666 C-T Hetero INTERGENIC
SBS Chr7 11168368 T-C Hetero INTERGENIC
SBS Chr7 17440096 T-C Hetero INTERGENIC
SBS Chr8 13644732 G-A Homo INTERGENIC
SBS Chr9 11320489 A-G Hetero INTERGENIC
SBS Chr9 15075750 A-T Hetero INTRON
SBS Chr9 19663681 A-T Hetero UTR_3_PRIME
SBS Chr9 21117475 A-G Hetero INTERGENIC
SBS Chr9 21883569 G-A Homo INTRON
SBS Chr10 251769 A-G Hetero INTERGENIC
SBS Chr10 10238976 C-T Hetero INTERGENIC
SBS Chr10 12934959 T-C Homo INTERGENIC
SBS Chr10 13724347 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g083500
SBS Chr10 19821095 T-A Hetero INTERGENIC
SBS Chr11 20378840 T-A Hetero INTERGENIC
SBS Chr11 20755169 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g163600
SBS Chr11 25606697 C-T Hetero INTERGENIC
SBS Chr12 1988097 G-A Hetero INTERGENIC
SBS Chr12 16001992 G-A Hetero INTERGENIC
SBS Chr12 18653393 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 452192 452194 2
Deletion Chr5 3795001 3825000 29999 5
Deletion Chr10 8269928 8269930 2
Deletion Chr8 8999299 8999305 6
Deletion Chr4 10740184 10740188 4
Deletion Chr2 11601873 11601879 6
Deletion Chr11 12456290 12456291 1
Deletion Chr1 20807402 20807403 1
Deletion Chr6 21481798 21481806 8
Deletion Chr5 21641001 21684000 42999 5
Deletion Chr3 21961272 21961281 9
Deletion Chr2 35361276 35361286 10

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41577549 41577552 2
Insertion Chr12 12131658 12131662 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 22637101 23158937 OsKitaake07g199900
Inversion Chr7 22637113 23158948 OsKitaake07g199900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2182282	T-C	Hetero	INTERGENIC
SBS	Chr1	19359156	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g193400
SBS	Chr1	21851615	G-A	Hetero	INTERGENIC
SBS	Chr1	27313207	G-T	Hetero	INTERGENIC
SBS	Chr1	36146457	A-G	Hetero	INTRON
SBS	Chr1	40188283	G-A	Homo	INTERGENIC
SBS	Chr2	11536698	G-T	Homo	INTERGENIC
SBS	Chr2	15496399	T-A	Homo	INTERGENIC
SBS	Chr3	19493549	G-A	Homo	INTERGENIC
SBS	Chr3	23235295	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	23257857	C-A	Homo	INTERGENIC
SBS	Chr4	4855212	T-C	Hetero	INTERGENIC
SBS	Chr4	8151422	G-C	Hetero	INTRON
SBS	Chr4	15825704	T-A	Hetero	INTERGENIC
SBS	Chr4	28872788	G-A	Hetero	INTERGENIC
SBS	Chr5	5950410	G-A	Hetero	INTERGENIC
SBS	Chr5	13075903	A-G	Hetero	INTRON
SBS	Chr5	15820178	T-C	Hetero	INTERGENIC
SBS	Chr5	22672752	A-T	Homo	INTERGENIC
SBS	Chr5	26529081	T-C	Hetero	INTERGENIC
SBS	Chr6	24812666	C-T	Hetero	INTERGENIC
SBS	Chr7	11168368	T-C	Hetero	INTERGENIC
SBS	Chr7	17440096	T-C	Hetero	INTERGENIC
SBS	Chr8	13644732	G-A	Homo	INTERGENIC
SBS	Chr9	11320489	A-G	Hetero	INTERGENIC
SBS	Chr9	15075750	A-T	Hetero	INTRON
SBS	Chr9	19663681	A-T	Hetero	UTR_3_PRIME
SBS	Chr9	21117475	A-G	Hetero	INTERGENIC
SBS	Chr9	21883569	G-A	Homo	INTRON
SBS	Chr10	251769	A-G	Hetero	INTERGENIC
SBS	Chr10	10238976	C-T	Hetero	INTERGENIC
SBS	Chr10	12934959	T-C	Homo	INTERGENIC
SBS	Chr10	13724347	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g083500
SBS	Chr10	19821095	T-A	Hetero	INTERGENIC
SBS	Chr11	20378840	T-A	Hetero	INTERGENIC
SBS	Chr11	20755169	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g163600
SBS	Chr11	25606697	C-T	Hetero	INTERGENIC
SBS	Chr12	1988097	G-A	Hetero	INTERGENIC
SBS	Chr12	16001992	G-A	Hetero	INTERGENIC
SBS	Chr12	18653393	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	452192	452194	2
Deletion	Chr5	3795001	3825000	29999	5
Deletion	Chr10	8269928	8269930	2
Deletion	Chr8	8999299	8999305	6
Deletion	Chr4	10740184	10740188	4
Deletion	Chr2	11601873	11601879	6
Deletion	Chr11	12456290	12456291	1
Deletion	Chr1	20807402	20807403	1
Deletion	Chr6	21481798	21481806	8
Deletion	Chr5	21641001	21684000	42999	5
Deletion	Chr3	21961272	21961281	9
Deletion	Chr2	35361276	35361286	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	22637101	23158937	OsKitaake07g199900
Inversion	Chr7	22637113	23158948	OsKitaake07g199900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes