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Mutant Information

Mutant Name	FN2731-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2731-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7665265 A-T Hetero INTERGENIC
SBS Chr1 28859976 T-A Hetero INTRON
SBS Chr1 30412643 A-G Hetero INTERGENIC
SBS Chr1 31657320 G-T Hetero INTRON
SBS Chr2 3517853 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g051100
SBS Chr2 7200927 C-A Hetero INTERGENIC
SBS Chr2 7548272 C-A Homo INTERGENIC
SBS Chr2 9961206 A-G Homo INTERGENIC
SBS Chr2 12693145 G-T Hetero INTERGENIC
SBS Chr2 17223450 T-A Hetero UTR_3_PRIME
SBS Chr2 18935574 C-A Hetero INTERGENIC
SBS Chr3 1307106 G-A Hetero INTERGENIC
SBS Chr3 9586730 T-A Homo INTERGENIC
SBS Chr3 9586731 T-A Homo INTERGENIC
SBS Chr3 12212538 C-G Hetero INTERGENIC
SBS Chr3 16105094 G-C Homo INTERGENIC
SBS Chr3 25137144 G-A Hetero INTERGENIC
SBS Chr3 37282488 C-G Homo INTERGENIC
SBS Chr4 549277 A-G Hetero INTERGENIC
SBS Chr4 2297961 G-A Hetero INTERGENIC
SBS Chr4 10007870 G-A Hetero INTERGENIC
SBS Chr4 13283410 C-T Hetero INTERGENIC
SBS Chr4 21582745 C-A Hetero INTERGENIC
SBS Chr4 23922571 A-G Hetero INTERGENIC
SBS Chr4 36695305 G-T Hetero INTERGENIC
SBS Chr5 11803238 A-G Hetero INTERGENIC
SBS Chr5 17951577 C-A Hetero INTERGENIC
SBS Chr5 20863552 A-C Homo INTRON
SBS Chr5 26716612 A-G Hetero INTERGENIC
SBS Chr6 13527710 A-G Hetero INTERGENIC
SBS Chr6 15361815 A-G Hetero INTERGENIC
SBS Chr6 15970104 C-T Hetero INTERGENIC
SBS Chr7 5828877 A-G Hetero INTERGENIC
SBS Chr7 11418151 G-C Hetero INTERGENIC
SBS Chr7 18786464 T-A Homo INTRON
SBS Chr7 21294899 C-A Hetero INTERGENIC
SBS Chr8 11255759 T-C Hetero INTERGENIC
SBS Chr8 12102501 A-T Hetero INTERGENIC
SBS Chr8 12324358 G-A Hetero INTERGENIC
SBS Chr8 15130787 A-T Hetero INTERGENIC
SBS Chr8 15130788 G-T Hetero INTERGENIC
SBS Chr8 20910473 T-C Hetero INTRON
SBS Chr8 22627825 T-C Homo INTRON
SBS Chr8 28461912 C-T Hetero INTERGENIC
SBS Chr9 14292200 G-A Hetero INTERGENIC
SBS Chr10 3820326 C-T Hetero INTERGENIC
SBS Chr10 9217678 G-A Hetero INTERGENIC
SBS Chr10 12638030 G-A Hetero INTERGENIC
SBS Chr10 23334170 T-G Hetero INTERGENIC
SBS Chr11 9135562 G-T Hetero INTERGENIC
SBS Chr12 2724820 G-C Hetero INTERGENIC
SBS Chr12 4740650 T-A Homo INTERGENIC
SBS Chr12 10120012 C-A Hetero INTRON
SBS Chr12 10889050 C-T Hetero INTERGENIC
SBS Chr12 20995863 G-C Homo UTR_3_PRIME
SBS Chr12 26181389 G-A Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 5558873 5558878 5
Deletion Chr8 9821688 9821689 1 OsKitaake08g091600
Deletion Chr12 11520969 11520975 6
Deletion Chr9 12061598 12061603 5
Deletion Chr9 12632362 12632365 3
Deletion Chr9 12840814 12840820 6
Deletion Chr9 15554838 15554935 97
Deletion Chr3 20658327 20658328 1
Deletion Chr12 23880011 23880015 4
Deletion Chr6 24112107 24112108 1
Deletion Chr12 24884658 24884661 3
Deletion Chr2 29670107 29670110 3
Deletion Chr1 31657117 31657120 3
Deletion Chr1 40311030 40311037 7

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 43972557 43972560 2
Insertion Chr1 43987690 43987695 4
Insertion Chr2 26510707 26510709 1
Insertion Chr4 13381933 13381936 2
Insertion Chr6 20892185 20892189 3
Insertion Chr7 21603745 21603748 2
Insertion Chr8 4109050 4109052 1
Insertion Chr11 21987542 21987545 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 8847617 9029495 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 8723903 Chr2 23730067 OsKitaake03g119300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7665265	A-T	Hetero	INTERGENIC
SBS	Chr1	28859976	T-A	Hetero	INTRON
SBS	Chr1	30412643	A-G	Hetero	INTERGENIC
SBS	Chr1	31657320	G-T	Hetero	INTRON
SBS	Chr2	3517853	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g051100
SBS	Chr2	7200927	C-A	Hetero	INTERGENIC
SBS	Chr2	7548272	C-A	Homo	INTERGENIC
SBS	Chr2	9961206	A-G	Homo	INTERGENIC
SBS	Chr2	12693145	G-T	Hetero	INTERGENIC
SBS	Chr2	17223450	T-A	Hetero	UTR_3_PRIME
SBS	Chr2	18935574	C-A	Hetero	INTERGENIC
SBS	Chr3	1307106	G-A	Hetero	INTERGENIC
SBS	Chr3	9586730	T-A	Homo	INTERGENIC
SBS	Chr3	9586731	T-A	Homo	INTERGENIC
SBS	Chr3	12212538	C-G	Hetero	INTERGENIC
SBS	Chr3	16105094	G-C	Homo	INTERGENIC
SBS	Chr3	25137144	G-A	Hetero	INTERGENIC
SBS	Chr3	37282488	C-G	Homo	INTERGENIC
SBS	Chr4	549277	A-G	Hetero	INTERGENIC
SBS	Chr4	2297961	G-A	Hetero	INTERGENIC
SBS	Chr4	10007870	G-A	Hetero	INTERGENIC
SBS	Chr4	13283410	C-T	Hetero	INTERGENIC
SBS	Chr4	21582745	C-A	Hetero	INTERGENIC
SBS	Chr4	23922571	A-G	Hetero	INTERGENIC
SBS	Chr4	36695305	G-T	Hetero	INTERGENIC
SBS	Chr5	11803238	A-G	Hetero	INTERGENIC
SBS	Chr5	17951577	C-A	Hetero	INTERGENIC
SBS	Chr5	20863552	A-C	Homo	INTRON
SBS	Chr5	26716612	A-G	Hetero	INTERGENIC
SBS	Chr6	13527710	A-G	Hetero	INTERGENIC
SBS	Chr6	15361815	A-G	Hetero	INTERGENIC
SBS	Chr6	15970104	C-T	Hetero	INTERGENIC
SBS	Chr7	5828877	A-G	Hetero	INTERGENIC
SBS	Chr7	11418151	G-C	Hetero	INTERGENIC
SBS	Chr7	18786464	T-A	Homo	INTRON
SBS	Chr7	21294899	C-A	Hetero	INTERGENIC
SBS	Chr8	11255759	T-C	Hetero	INTERGENIC
SBS	Chr8	12102501	A-T	Hetero	INTERGENIC
SBS	Chr8	12324358	G-A	Hetero	INTERGENIC
SBS	Chr8	15130787	A-T	Hetero	INTERGENIC
SBS	Chr8	15130788	G-T	Hetero	INTERGENIC
SBS	Chr8	20910473	T-C	Hetero	INTRON
SBS	Chr8	22627825	T-C	Homo	INTRON
SBS	Chr8	28461912	C-T	Hetero	INTERGENIC
SBS	Chr9	14292200	G-A	Hetero	INTERGENIC
SBS	Chr10	3820326	C-T	Hetero	INTERGENIC
SBS	Chr10	9217678	G-A	Hetero	INTERGENIC
SBS	Chr10	12638030	G-A	Hetero	INTERGENIC
SBS	Chr10	23334170	T-G	Hetero	INTERGENIC
SBS	Chr11	9135562	G-T	Hetero	INTERGENIC
SBS	Chr12	2724820	G-C	Hetero	INTERGENIC
SBS	Chr12	4740650	T-A	Homo	INTERGENIC
SBS	Chr12	10120012	C-A	Hetero	INTRON
SBS	Chr12	10889050	C-T	Hetero	INTERGENIC
SBS	Chr12	20995863	G-C	Homo	UTR_3_PRIME
SBS	Chr12	26181389	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	5558873	5558878	5
Deletion	Chr8	9821688	9821689	1	OsKitaake08g091600
Deletion	Chr12	11520969	11520975	6
Deletion	Chr9	12061598	12061603	5
Deletion	Chr9	12632362	12632365	3
Deletion	Chr9	12840814	12840820	6
Deletion	Chr9	15554838	15554935	97
Deletion	Chr3	20658327	20658328	1
Deletion	Chr12	23880011	23880015	4
Deletion	Chr6	24112107	24112108	1
Deletion	Chr12	24884658	24884661	3
Deletion	Chr2	29670107	29670110	3
Deletion	Chr1	31657117	31657120	3
Deletion	Chr1	40311030	40311037	7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	8847617	9029495	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes