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Mutant Information

Mutant Name	FN2734-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2734-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 115

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11444427 T-C Hetero INTERGENIC
SBS Chr1 12854418 A-G Hetero INTERGENIC
SBS Chr1 13051693 G-C Hetero INTERGENIC
SBS Chr1 24475612 A-T Homo INTERGENIC
SBS Chr1 27818284 G-A Hetero INTERGENIC
SBS Chr1 30694621 T-C Hetero INTERGENIC
SBS Chr1 34221437 C-A Hetero STOP_GAINED OsKitaake01g352600
SBS Chr1 35433311 T-A Hetero INTERGENIC
SBS Chr2 15578058 T-C Homo INTERGENIC
SBS Chr2 25476668 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g251400
SBS Chr2 35782461 G-T Hetero UTR_3_PRIME
SBS Chr3 20773750 G-A Hetero INTERGENIC
SBS Chr3 22524751 G-A Hetero INTERGENIC
SBS Chr3 23041367 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g249000
SBS Chr3 36586003 G-A Hetero INTERGENIC
SBS Chr4 873377 C-T Hetero INTERGENIC
SBS Chr4 4896451 C-G Homo INTERGENIC
SBS Chr4 6580741 G-A Hetero INTERGENIC
SBS Chr4 11635528 G-T Hetero INTERGENIC
SBS Chr4 27103828 A-T Hetero INTERGENIC
SBS Chr4 29580663 G-A Hetero INTERGENIC
SBS Chr4 32130598 G-A Hetero INTERGENIC
SBS Chr4 33739203 G-A Hetero INTERGENIC
SBS Chr5 3590868 A-G Hetero INTERGENIC
SBS Chr5 5797470 G-T Hetero INTERGENIC
SBS Chr5 9981778 C-G Hetero INTERGENIC
SBS Chr5 28408935 C-A Hetero INTERGENIC
SBS Chr5 29426524 G-T Hetero INTERGENIC
SBS Chr6 3955272 A-C Hetero UTR_3_PRIME
SBS Chr6 6581759 T-C Hetero INTRON
SBS Chr6 9676117 G-A Hetero INTERGENIC
SBS Chr6 15455750 A-G Hetero INTERGENIC
SBS Chr6 19275392 C-T Homo INTERGENIC
SBS Chr6 25994796 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 15838617 C-T Hetero INTERGENIC
SBS Chr7 15961649 G-A Hetero INTERGENIC
SBS Chr7 29658786 T-A Hetero INTERGENIC
SBS Chr8 5811139 A-C Hetero INTERGENIC
SBS Chr8 9489876 G-A Hetero INTERGENIC
SBS Chr8 16171943 A-G Hetero INTERGENIC
SBS Chr8 28101167 T-C Homo INTERGENIC
SBS Chr9 5007075 G-T Hetero INTERGENIC
SBS Chr9 7764375 C-T Hetero INTERGENIC
SBS Chr9 8289209 C-T Hetero INTERGENIC
SBS Chr9 16486941 T-G Hetero UTR_3_PRIME
SBS Chr9 20669792 C-A Hetero INTERGENIC
SBS Chr9 22104799 G-A Hetero UTR_3_PRIME
SBS Chr9 22586245 A-C Hetero INTRON
SBS Chr10 4551814 C-T Homo INTERGENIC
SBS Chr10 13703397 T-G Hetero INTERGENIC
SBS Chr10 14705399 T-C Hetero INTERGENIC
SBS Chr11 7266182 C-T Hetero INTERGENIC
SBS Chr11 7342809 A-G Hetero INTERGENIC
SBS Chr11 16801596 G-T Homo INTERGENIC
SBS Chr11 19720509 G-A Hetero INTERGENIC
SBS Chr11 21945883 A-C Hetero INTERGENIC
SBS Chr12 7371161 A-T Hetero INTERGENIC
SBS Chr12 11468867 T-C Hetero INTERGENIC
SBS Chr12 12336685 G-A Hetero INTERGENIC
SBS Chr12 25817492 G-A Hetero INTERGENIC
SBS Chr1 1993529 C-T Hetero INTERGENIC
SBS Chr1 12854418 A-G Hetero INTERGENIC
SBS Chr1 13051693 G-C Hetero INTERGENIC
SBS Chr1 24475612 A-T Homo INTERGENIC
SBS Chr1 34221437 C-A Hetero STOP_GAINED OsKitaake01g352600
SBS Chr1 35433311 T-A Hetero INTERGENIC
SBS Chr2 15578058 T-C Homo INTERGENIC
SBS Chr2 23655046 C-T Hetero INTERGENIC
SBS Chr3 10939388 A-G Hetero INTERGENIC
SBS Chr3 20773750 G-A Hetero INTERGENIC
SBS Chr3 22524751 G-A Hetero INTERGENIC
SBS Chr3 25880766 C-G Hetero INTERGENIC
SBS Chr4 4896451 C-G Homo INTERGENIC
SBS Chr4 7338181 C-T Hetero INTERGENIC
SBS Chr4 14450471 T-A Hetero INTERGENIC
SBS Chr4 19059203 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g096100
SBS Chr4 27103828 A-T Hetero INTERGENIC
SBS Chr4 29580663 G-A Hetero INTERGENIC
SBS Chr4 32130598 G-A Hetero INTERGENIC
SBS Chr5 3590868 A-G Hetero INTERGENIC
SBS Chr5 3870109 T-A Hetero INTERGENIC
SBS Chr5 5797470 G-T Hetero INTERGENIC
SBS Chr5 9981778 C-G Hetero INTERGENIC
SBS Chr5 13428415 C-A Hetero INTRON
SBS Chr5 14967307 G-A Hetero INTERGENIC
SBS Chr5 16549852 G-A Hetero INTERGENIC
SBS Chr5 29426524 G-T Hetero INTERGENIC
SBS Chr6 6581759 T-C Hetero INTRON
SBS Chr6 14265290 G-A Hetero INTERGENIC
SBS Chr6 16252872 T-A Hetero INTERGENIC
SBS Chr6 16252873 C-A Hetero INTERGENIC
SBS Chr6 19275392 C-T Homo INTERGENIC
SBS Chr6 20957623 T-C Hetero INTERGENIC
SBS Chr7 11902104 A-T Hetero INTERGENIC
SBS Chr7 15961649 G-A Hetero INTERGENIC
SBS Chr7 29658786 T-A Hetero INTERGENIC
SBS Chr8 5811139 A-C Hetero INTERGENIC
SBS Chr8 9489876 G-A Hetero INTERGENIC
SBS Chr8 16171943 A-G Hetero INTERGENIC
SBS Chr8 27102089 T-A Hetero INTRON
SBS Chr8 28101167 T-C Homo INTERGENIC
SBS Chr9 5007075 G-T Hetero INTERGENIC
SBS Chr9 16486941 T-G Hetero UTR_3_PRIME
SBS Chr9 20669792 C-A Hetero INTERGENIC
SBS Chr9 22104799 G-A Hetero UTR_3_PRIME
SBS Chr10 4551814 C-T Homo INTERGENIC
SBS Chr10 13703397 T-G Hetero INTERGENIC
SBS Chr10 14705399 T-C Hetero INTERGENIC
SBS Chr11 7751035 A-G Hetero INTERGENIC
SBS Chr11 16801596 G-T Homo INTERGENIC
SBS Chr11 20514982 G-T Hetero INTERGENIC
SBS Chr12 1724258 T-C Hetero INTERGENIC
SBS Chr12 7371161 A-T Hetero INTERGENIC
SBS Chr12 12336685 G-A Hetero INTERGENIC
SBS Chr12 25817492 G-A Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1115001 1125000 9999 2
Deletion Chr8 2834363 2834365 2 2
Deletion Chr7 3545155 3545162 7
Deletion Chr6 3886816 3886818 2
Deletion Chr2 4773328 4773330 2 2
Deletion Chr6 5403995 5404002 7
Deletion Chr8 5863570 5863580 10
Deletion Chr8 6287858 6287869 11
Deletion Chr8 9654896 9654899 3
Deletion Chr2 9753116 9753117 1 2
Deletion Chr4 10449792 10450422 630
Deletion Chr10 11309183 11309197 14
Deletion Chr6 13741928 13741929 1 2
Deletion Chr11 13935132 13935143 11 2
Deletion Chr5 13999370 13999372 2
Deletion Chr12 17569512 17569513 1 2
Deletion Chr7 18893484 18893498 14 2
Deletion Chr11 25058001 25605000 546999 50
Deletion Chr11 25060001 25146000 85999 8
Deletion Chr11 25149001 25607000 457999 43
Deletion Chr1 25808120 25808132 12 2
Deletion Chr6 27181053 27181065 12 2
Deletion Chr2 33014451 33014459 8 2
Deletion Chr3 36449799 36449800 1 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17229633 17229636 2
Insertion Chr3 10043096 10043100 3
Insertion Chr3 11614504 11614508 3
Insertion Chr4 17069847 17069850 2
Insertion Chr3 11614504 11614507 2
Insertion Chr11 20550615 20550618 2
Insertion Chr11 24259461 24259465 3

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 5551373 Chr8 28512791

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11444427	T-C	Hetero	INTERGENIC
SBS	Chr1	12854418	A-G	Hetero	INTERGENIC
SBS	Chr1	13051693	G-C	Hetero	INTERGENIC
SBS	Chr1	24475612	A-T	Homo	INTERGENIC
SBS	Chr1	27818284	G-A	Hetero	INTERGENIC
SBS	Chr1	30694621	T-C	Hetero	INTERGENIC
SBS	Chr1	34221437	C-A	Hetero	STOP_GAINED	OsKitaake01g352600
SBS	Chr1	35433311	T-A	Hetero	INTERGENIC
SBS	Chr2	15578058	T-C	Homo	INTERGENIC
SBS	Chr2	25476668	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g251400
SBS	Chr2	35782461	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	20773750	G-A	Hetero	INTERGENIC
SBS	Chr3	22524751	G-A	Hetero	INTERGENIC
SBS	Chr3	23041367	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g249000
SBS	Chr3	36586003	G-A	Hetero	INTERGENIC
SBS	Chr4	873377	C-T	Hetero	INTERGENIC
SBS	Chr4	4896451	C-G	Homo	INTERGENIC
SBS	Chr4	6580741	G-A	Hetero	INTERGENIC
SBS	Chr4	11635528	G-T	Hetero	INTERGENIC
SBS	Chr4	27103828	A-T	Hetero	INTERGENIC
SBS	Chr4	29580663	G-A	Hetero	INTERGENIC
SBS	Chr4	32130598	G-A	Hetero	INTERGENIC
SBS	Chr4	33739203	G-A	Hetero	INTERGENIC
SBS	Chr5	3590868	A-G	Hetero	INTERGENIC
SBS	Chr5	5797470	G-T	Hetero	INTERGENIC
SBS	Chr5	9981778	C-G	Hetero	INTERGENIC
SBS	Chr5	28408935	C-A	Hetero	INTERGENIC
SBS	Chr5	29426524	G-T	Hetero	INTERGENIC
SBS	Chr6	3955272	A-C	Hetero	UTR_3_PRIME
SBS	Chr6	6581759	T-C	Hetero	INTRON
SBS	Chr6	9676117	G-A	Hetero	INTERGENIC
SBS	Chr6	15455750	A-G	Hetero	INTERGENIC
SBS	Chr6	19275392	C-T	Homo	INTERGENIC
SBS	Chr6	25994796	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	15838617	C-T	Hetero	INTERGENIC
SBS	Chr7	15961649	G-A	Hetero	INTERGENIC
SBS	Chr7	29658786	T-A	Hetero	INTERGENIC
SBS	Chr8	5811139	A-C	Hetero	INTERGENIC
SBS	Chr8	9489876	G-A	Hetero	INTERGENIC
SBS	Chr8	16171943	A-G	Hetero	INTERGENIC
SBS	Chr8	28101167	T-C	Homo	INTERGENIC
SBS	Chr9	5007075	G-T	Hetero	INTERGENIC
SBS	Chr9	7764375	C-T	Hetero	INTERGENIC
SBS	Chr9	8289209	C-T	Hetero	INTERGENIC
SBS	Chr9	16486941	T-G	Hetero	UTR_3_PRIME
SBS	Chr9	20669792	C-A	Hetero	INTERGENIC
SBS	Chr9	22104799	G-A	Hetero	UTR_3_PRIME
SBS	Chr9	22586245	A-C	Hetero	INTRON
SBS	Chr10	4551814	C-T	Homo	INTERGENIC
SBS	Chr10	13703397	T-G	Hetero	INTERGENIC
SBS	Chr10	14705399	T-C	Hetero	INTERGENIC
SBS	Chr11	7266182	C-T	Hetero	INTERGENIC
SBS	Chr11	7342809	A-G	Hetero	INTERGENIC
SBS	Chr11	16801596	G-T	Homo	INTERGENIC
SBS	Chr11	19720509	G-A	Hetero	INTERGENIC
SBS	Chr11	21945883	A-C	Hetero	INTERGENIC
SBS	Chr12	7371161	A-T	Hetero	INTERGENIC
SBS	Chr12	11468867	T-C	Hetero	INTERGENIC
SBS	Chr12	12336685	G-A	Hetero	INTERGENIC
SBS	Chr12	25817492	G-A	Hetero	INTERGENIC
SBS	Chr1	1993529	C-T	Hetero	INTERGENIC
SBS	Chr1	12854418	A-G	Hetero	INTERGENIC
SBS	Chr1	13051693	G-C	Hetero	INTERGENIC
SBS	Chr1	24475612	A-T	Homo	INTERGENIC
SBS	Chr1	34221437	C-A	Hetero	STOP_GAINED	OsKitaake01g352600
SBS	Chr1	35433311	T-A	Hetero	INTERGENIC
SBS	Chr2	15578058	T-C	Homo	INTERGENIC
SBS	Chr2	23655046	C-T	Hetero	INTERGENIC
SBS	Chr3	10939388	A-G	Hetero	INTERGENIC
SBS	Chr3	20773750	G-A	Hetero	INTERGENIC
SBS	Chr3	22524751	G-A	Hetero	INTERGENIC
SBS	Chr3	25880766	C-G	Hetero	INTERGENIC
SBS	Chr4	4896451	C-G	Homo	INTERGENIC
SBS	Chr4	7338181	C-T	Hetero	INTERGENIC
SBS	Chr4	14450471	T-A	Hetero	INTERGENIC
SBS	Chr4	19059203	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g096100
SBS	Chr4	27103828	A-T	Hetero	INTERGENIC
SBS	Chr4	29580663	G-A	Hetero	INTERGENIC
SBS	Chr4	32130598	G-A	Hetero	INTERGENIC
SBS	Chr5	3590868	A-G	Hetero	INTERGENIC
SBS	Chr5	3870109	T-A	Hetero	INTERGENIC
SBS	Chr5	5797470	G-T	Hetero	INTERGENIC
SBS	Chr5	9981778	C-G	Hetero	INTERGENIC
SBS	Chr5	13428415	C-A	Hetero	INTRON
SBS	Chr5	14967307	G-A	Hetero	INTERGENIC
SBS	Chr5	16549852	G-A	Hetero	INTERGENIC
SBS	Chr5	29426524	G-T	Hetero	INTERGENIC
SBS	Chr6	6581759	T-C	Hetero	INTRON
SBS	Chr6	14265290	G-A	Hetero	INTERGENIC
SBS	Chr6	16252872	T-A	Hetero	INTERGENIC
SBS	Chr6	16252873	C-A	Hetero	INTERGENIC
SBS	Chr6	19275392	C-T	Homo	INTERGENIC
SBS	Chr6	20957623	T-C	Hetero	INTERGENIC
SBS	Chr7	11902104	A-T	Hetero	INTERGENIC
SBS	Chr7	15961649	G-A	Hetero	INTERGENIC
SBS	Chr7	29658786	T-A	Hetero	INTERGENIC
SBS	Chr8	5811139	A-C	Hetero	INTERGENIC
SBS	Chr8	9489876	G-A	Hetero	INTERGENIC
SBS	Chr8	16171943	A-G	Hetero	INTERGENIC
SBS	Chr8	27102089	T-A	Hetero	INTRON
SBS	Chr8	28101167	T-C	Homo	INTERGENIC
SBS	Chr9	5007075	G-T	Hetero	INTERGENIC
SBS	Chr9	16486941	T-G	Hetero	UTR_3_PRIME
SBS	Chr9	20669792	C-A	Hetero	INTERGENIC
SBS	Chr9	22104799	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	4551814	C-T	Homo	INTERGENIC
SBS	Chr10	13703397	T-G	Hetero	INTERGENIC
SBS	Chr10	14705399	T-C	Hetero	INTERGENIC
SBS	Chr11	7751035	A-G	Hetero	INTERGENIC
SBS	Chr11	16801596	G-T	Homo	INTERGENIC
SBS	Chr11	20514982	G-T	Hetero	INTERGENIC
SBS	Chr12	1724258	T-C	Hetero	INTERGENIC
SBS	Chr12	7371161	A-T	Hetero	INTERGENIC
SBS	Chr12	12336685	G-A	Hetero	INTERGENIC
SBS	Chr12	25817492	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1115001	1125000	9999	2
Deletion	Chr8	2834363	2834365	2	2
Deletion	Chr7	3545155	3545162	7
Deletion	Chr6	3886816	3886818	2
Deletion	Chr2	4773328	4773330	2	2
Deletion	Chr6	5403995	5404002	7
Deletion	Chr8	5863570	5863580	10
Deletion	Chr8	6287858	6287869	11
Deletion	Chr8	9654896	9654899	3
Deletion	Chr2	9753116	9753117	1	2
Deletion	Chr4	10449792	10450422	630
Deletion	Chr10	11309183	11309197	14
Deletion	Chr6	13741928	13741929	1	2
Deletion	Chr11	13935132	13935143	11	2
Deletion	Chr5	13999370	13999372	2
Deletion	Chr12	17569512	17569513	1	2
Deletion	Chr7	18893484	18893498	14	2
Deletion	Chr11	25058001	25605000	546999	50
Deletion	Chr11	25060001	25146000	85999	8
Deletion	Chr11	25149001	25607000	457999	43
Deletion	Chr1	25808120	25808132	12	2
Deletion	Chr6	27181053	27181065	12	2
Deletion	Chr2	33014451	33014459	8	2
Deletion	Chr3	36449799	36449800	1	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	5551373	Chr8	28512791

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes