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Mutant Information

Mutant Name	FN2735-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2735-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 68

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 645199 C-T Hetero INTERGENIC
SBS Chr1 8398314 T-G Hetero UTR_3_PRIME
SBS Chr1 9314043 G-A Homo INTRON
SBS Chr1 28177178 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g273800
SBS Chr2 4854531 C-A Hetero INTERGENIC
SBS Chr2 34102290 G-A Hetero INTERGENIC
SBS Chr2 36306451 C-T Hetero INTRON
SBS Chr3 5797577 T-C Homo INTERGENIC
SBS Chr3 12057309 G-C Homo INTERGENIC
SBS Chr3 21557160 G-A Hetero INTERGENIC
SBS Chr3 21557161 C-A Hetero INTERGENIC
SBS Chr3 23386319 C-A Hetero INTERGENIC
SBS Chr3 23386320 T-A Hetero INTERGENIC
SBS Chr4 15201 C-T Hetero INTERGENIC
SBS Chr4 16017171 G-T Hetero INTERGENIC
SBS Chr4 20629028 C-T Hetero INTRON
SBS Chr4 29488242 C-A Homo INTRON
SBS Chr4 33235589 C-T Homo INTERGENIC
SBS Chr5 19458787 G-T Hetero INTERGENIC
SBS Chr6 8932258 G-T Homo INTERGENIC
SBS Chr6 9934073 C-A Hetero INTERGENIC
SBS Chr6 12228098 T-C Hetero INTERGENIC
SBS Chr6 12228099 A-T Hetero INTERGENIC
SBS Chr6 12228100 C-T Hetero INTERGENIC
SBS Chr6 17085269 G-A Hetero INTERGENIC
SBS Chr6 30983329 T-G Homo INTRON
SBS Chr8 8001798 C-T Hetero INTERGENIC
SBS Chr8 12510722 G-C Hetero INTERGENIC
SBS Chr8 27861950 A-C Hetero INTERGENIC
SBS Chr9 16203787 C-T Hetero INTERGENIC
SBS Chr10 1286747 C-T Hetero INTERGENIC
SBS Chr10 4650784 C-T Hetero INTERGENIC
SBS Chr10 7410469 A-T Hetero INTERGENIC
SBS Chr11 5690198 C-T Homo UTR_3_PRIME
SBS Chr12 8730850 G-T Hetero INTERGENIC
SBS Chr12 16753703 C-G Hetero INTERGENIC
SBS Chr1 645199 C-T Homo INTERGENIC
SBS Chr1 8398314 T-G Hetero UTR_3_PRIME
SBS Chr1 9314043 G-A Homo INTRON
SBS Chr1 28177178 C-A Homo NON_SYNONYMOUS_CODING OsKitaake01g273800
SBS Chr2 4854531 C-A Hetero INTERGENIC
SBS Chr2 34102290 G-A Hetero INTERGENIC
SBS Chr2 36306451 C-T Hetero INTRON
SBS Chr3 5797577 T-C Homo INTERGENIC
SBS Chr3 8865891 C-A Hetero SYNONYMOUS_CODING
SBS Chr3 12057309 G-C Homo INTERGENIC
SBS Chr3 21557160 G-A Hetero INTERGENIC
SBS Chr3 21557161 C-A Hetero INTERGENIC
SBS Chr3 23386319 C-A Hetero INTERGENIC
SBS Chr3 23386320 T-A Hetero INTERGENIC
SBS Chr3 29421479 T-C Hetero INTERGENIC
SBS Chr4 16017171 G-T Hetero INTERGENIC
SBS Chr4 29488242 C-A Homo INTRON
SBS Chr4 33235589 C-T Homo INTERGENIC
SBS Chr5 19458787 G-T Hetero INTERGENIC
SBS Chr6 8932258 G-T Homo INTERGENIC
SBS Chr6 12228098 T-C Hetero INTERGENIC
SBS Chr6 12228099 A-T Hetero INTERGENIC
SBS Chr6 12228100 C-T Hetero INTERGENIC
SBS Chr6 13022052 C-T Hetero INTERGENIC
SBS Chr6 17085269 G-A Hetero INTERGENIC
SBS Chr6 30983329 T-G Homo INTRON
SBS Chr8 12510722 G-C Hetero INTERGENIC
SBS Chr8 27861950 A-C Hetero INTERGENIC
SBS Chr9 16203787 C-T Hetero INTERGENIC
SBS Chr10 7410469 A-T Hetero INTERGENIC
SBS Chr11 5690198 C-T Homo UTR_3_PRIME
SBS Chr12 16753703 C-G Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 524305 524306 1
Deletion Chr8 1252538 1252541 3 2
Deletion Chr6 3346059 3346065 6 2
Deletion Chr9 4648337 4648342 5
Deletion Chr1 4713878 4713886 8 2
Deletion Chr4 6012858 6012867 9
Deletion Chr12 9072237 9072239 2
Deletion Chr9 10589822 10589828 6 2
Deletion Chr11 17962429 17962430 1
Deletion Chr2 20464477 20464483 6
Deletion Chr11 21506681 21506748 67
Deletion Chr3 35540001 35599000 58999 12
Deletion Chr3 35543001 35602000 58999 11
Deletion Chr4 36894635 36894656 21

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 2956876 2956879 2
Insertion Chr8 5255130 5255138 7
Insertion Chr8 5255130 5255134 3
Insertion Chr11 13966688 13966691 2
Insertion Chr2 28849671 28849673 1
Insertion Chr11 12450264 12450279 14

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 890153 Chr2 10691670
Translocation Chr12 10647355 Chr8 15578723

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	645199	C-T	Hetero	INTERGENIC
SBS	Chr1	8398314	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	9314043	G-A	Homo	INTRON
SBS	Chr1	28177178	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g273800
SBS	Chr2	4854531	C-A	Hetero	INTERGENIC
SBS	Chr2	34102290	G-A	Hetero	INTERGENIC
SBS	Chr2	36306451	C-T	Hetero	INTRON
SBS	Chr3	5797577	T-C	Homo	INTERGENIC
SBS	Chr3	12057309	G-C	Homo	INTERGENIC
SBS	Chr3	21557160	G-A	Hetero	INTERGENIC
SBS	Chr3	21557161	C-A	Hetero	INTERGENIC
SBS	Chr3	23386319	C-A	Hetero	INTERGENIC
SBS	Chr3	23386320	T-A	Hetero	INTERGENIC
SBS	Chr4	15201	C-T	Hetero	INTERGENIC
SBS	Chr4	16017171	G-T	Hetero	INTERGENIC
SBS	Chr4	20629028	C-T	Hetero	INTRON
SBS	Chr4	29488242	C-A	Homo	INTRON
SBS	Chr4	33235589	C-T	Homo	INTERGENIC
SBS	Chr5	19458787	G-T	Hetero	INTERGENIC
SBS	Chr6	8932258	G-T	Homo	INTERGENIC
SBS	Chr6	9934073	C-A	Hetero	INTERGENIC
SBS	Chr6	12228098	T-C	Hetero	INTERGENIC
SBS	Chr6	12228099	A-T	Hetero	INTERGENIC
SBS	Chr6	12228100	C-T	Hetero	INTERGENIC
SBS	Chr6	17085269	G-A	Hetero	INTERGENIC
SBS	Chr6	30983329	T-G	Homo	INTRON
SBS	Chr8	8001798	C-T	Hetero	INTERGENIC
SBS	Chr8	12510722	G-C	Hetero	INTERGENIC
SBS	Chr8	27861950	A-C	Hetero	INTERGENIC
SBS	Chr9	16203787	C-T	Hetero	INTERGENIC
SBS	Chr10	1286747	C-T	Hetero	INTERGENIC
SBS	Chr10	4650784	C-T	Hetero	INTERGENIC
SBS	Chr10	7410469	A-T	Hetero	INTERGENIC
SBS	Chr11	5690198	C-T	Homo	UTR_3_PRIME
SBS	Chr12	8730850	G-T	Hetero	INTERGENIC
SBS	Chr12	16753703	C-G	Hetero	INTERGENIC
SBS	Chr1	645199	C-T	Homo	INTERGENIC
SBS	Chr1	8398314	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	9314043	G-A	Homo	INTRON
SBS	Chr1	28177178	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g273800
SBS	Chr2	4854531	C-A	Hetero	INTERGENIC
SBS	Chr2	34102290	G-A	Hetero	INTERGENIC
SBS	Chr2	36306451	C-T	Hetero	INTRON
SBS	Chr3	5797577	T-C	Homo	INTERGENIC
SBS	Chr3	8865891	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	12057309	G-C	Homo	INTERGENIC
SBS	Chr3	21557160	G-A	Hetero	INTERGENIC
SBS	Chr3	21557161	C-A	Hetero	INTERGENIC
SBS	Chr3	23386319	C-A	Hetero	INTERGENIC
SBS	Chr3	23386320	T-A	Hetero	INTERGENIC
SBS	Chr3	29421479	T-C	Hetero	INTERGENIC
SBS	Chr4	16017171	G-T	Hetero	INTERGENIC
SBS	Chr4	29488242	C-A	Homo	INTRON
SBS	Chr4	33235589	C-T	Homo	INTERGENIC
SBS	Chr5	19458787	G-T	Hetero	INTERGENIC
SBS	Chr6	8932258	G-T	Homo	INTERGENIC
SBS	Chr6	12228098	T-C	Hetero	INTERGENIC
SBS	Chr6	12228099	A-T	Hetero	INTERGENIC
SBS	Chr6	12228100	C-T	Hetero	INTERGENIC
SBS	Chr6	13022052	C-T	Hetero	INTERGENIC
SBS	Chr6	17085269	G-A	Hetero	INTERGENIC
SBS	Chr6	30983329	T-G	Homo	INTRON
SBS	Chr8	12510722	G-C	Hetero	INTERGENIC
SBS	Chr8	27861950	A-C	Hetero	INTERGENIC
SBS	Chr9	16203787	C-T	Hetero	INTERGENIC
SBS	Chr10	7410469	A-T	Hetero	INTERGENIC
SBS	Chr11	5690198	C-T	Homo	UTR_3_PRIME
SBS	Chr12	16753703	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	524305	524306	1
Deletion	Chr8	1252538	1252541	3	2
Deletion	Chr6	3346059	3346065	6	2
Deletion	Chr9	4648337	4648342	5
Deletion	Chr1	4713878	4713886	8	2
Deletion	Chr4	6012858	6012867	9
Deletion	Chr12	9072237	9072239	2
Deletion	Chr9	10589822	10589828	6	2
Deletion	Chr11	17962429	17962430	1
Deletion	Chr2	20464477	20464483	6
Deletion	Chr11	21506681	21506748	67
Deletion	Chr3	35540001	35599000	58999	12
Deletion	Chr3	35543001	35602000	58999	11
Deletion	Chr4	36894635	36894656	21

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	890153	Chr2	10691670
Translocation	Chr12	10647355	Chr8	15578723

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes