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Mutant Information

Mutant Name	FN2739-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2739-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3476909 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g046008
SBS Chr1 3744472 G-A Hetero STOP_GAINED OsKitaake01g049900
SBS Chr1 7183320 T-C Homo INTERGENIC
SBS Chr1 11302271 G-A Homo INTERGENIC
SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr2 2836116 C-A Hetero INTERGENIC
SBS Chr2 30953602 T-A Hetero INTRON
SBS Chr2 32010456 G-A Homo INTERGENIC
SBS Chr2 33951529 G-T Hetero INTERGENIC
SBS Chr3 10622243 G-A Homo INTERGENIC
SBS Chr3 13778020 A-G Hetero INTERGENIC
SBS Chr3 20806970 G-C Hetero INTERGENIC
SBS Chr3 24561490 A-G Homo INTERGENIC
SBS Chr3 31629614 C-T Hetero INTERGENIC
SBS Chr3 34153363 C-T Hetero UTR_5_PRIME
SBS Chr4 7859850 G-A Homo INTERGENIC
SBS Chr4 23852627 G-T Hetero INTERGENIC
SBS Chr5 12896777 T-C Hetero INTERGENIC
SBS Chr5 14554489 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g110900
SBS Chr5 15398121 G-A Hetero INTERGENIC
SBS Chr5 16981409 A-G Hetero INTERGENIC
SBS Chr5 19130798 G-A Hetero INTRON
SBS Chr5 21485687 G-C Hetero INTRON
SBS Chr5 28232427 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g261800
SBS Chr6 7962025 G-C Homo INTERGENIC
SBS Chr6 12863464 C-T Hetero INTERGENIC
SBS Chr6 21525043 G-C Hetero INTERGENIC
SBS Chr6 21699162 G-A Hetero INTRON
SBS Chr6 21853670 A-C Hetero INTERGENIC
SBS Chr6 23314152 G-A Hetero UTR_3_PRIME
SBS Chr6 24426049 G-A Hetero INTERGENIC
SBS Chr6 25070418 T-C Hetero INTERGENIC
SBS Chr6 28012337 G-A Homo INTERGENIC
SBS Chr6 28625355 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g263200
SBS Chr6 30314669 G-T Hetero INTERGENIC
SBS Chr7 17406203 T-A Hetero INTRON
SBS Chr7 18087338 A-G Hetero SYNONYMOUS_CODING
SBS Chr7 18928482 C-T Hetero UTR_3_PRIME
SBS Chr7 20848239 C-A Hetero INTRON
SBS Chr7 21888138 G-C Hetero INTERGENIC
SBS Chr8 21288407 G-A Hetero INTERGENIC
SBS Chr8 23326990 C-T Hetero INTERGENIC
SBS Chr8 26689082 G-A Hetero SPLICE_SITE_DONOR OsKitaake08g215201
SBS Chr8 26689083 T-A Hetero SPLICE_SITE_DONOR OsKitaake08g215201
SBS Chr9 11260721 C-A Hetero INTRON
SBS Chr9 16264766 C-G Hetero INTERGENIC
SBS Chr9 17199690 A-G Hetero INTERGENIC
SBS Chr10 435001 A-T Homo NON_SYNONYMOUS_CODING OsKitaake10g003000
SBS Chr10 8158064 A-G Hetero INTERGENIC
SBS Chr10 8573782 G-T Hetero INTERGENIC
SBS Chr10 19454966 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 6861874 G-T Homo INTERGENIC
SBS Chr11 16912860 T-A Hetero INTERGENIC
SBS Chr11 18561847 C-T Hetero INTRON
SBS Chr12 8395985 T-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4581599 4581609 10
Deletion Chr1 5292407 5292422 15
Deletion Chr1 8714282 8714288 6
Deletion Chr3 10028547 10028548 1
Deletion Chr3 13823417 13823420 3
Deletion Chr11 17717882 17718008 126
Deletion Chr11 18986001 19036000 49999 4
Deletion Chr9 19991864 19991866 2
Deletion Chr11 21650422 21650423 1
Deletion Chr1 24836139 24836141 2 OsKitaake01g240100
Deletion Chr5 25491001 25522000 30999 4
Deletion Chr1 31157355 31157363 8
Deletion Chr3 33232106 33232107 1
Deletion Chr1 39266844 39266847 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 23779239 23779242 2
Insertion Chr6 24846096 24846099 2
Insertion Chr8 1396065 1396067 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 17830766 17879666
Inversion Chr11 17830772 17879676
Inversion Chr11 18937231 19035288 OsKitaake11g147600
Inversion Chr11 18937232 18988799 OsKitaake11g147600

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 12946709 Chr5 25507853 2
Translocation Chr11 16009381 Chr8 26972002 OsKitaake11g128500
Translocation Chr11 16009383 Chr8 26972238 OsKitaake11g128500
Translocation Chr6 27739771 Chr5 5037827
Translocation Chr6 27739797 Chr5 5033020

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3476909	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g046008
SBS	Chr1	3744472	G-A	Hetero	STOP_GAINED	OsKitaake01g049900
SBS	Chr1	7183320	T-C	Homo	INTERGENIC
SBS	Chr1	11302271	G-A	Homo	INTERGENIC
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr2	2836116	C-A	Hetero	INTERGENIC
SBS	Chr2	30953602	T-A	Hetero	INTRON
SBS	Chr2	32010456	G-A	Homo	INTERGENIC
SBS	Chr2	33951529	G-T	Hetero	INTERGENIC
SBS	Chr3	10622243	G-A	Homo	INTERGENIC
SBS	Chr3	13778020	A-G	Hetero	INTERGENIC
SBS	Chr3	20806970	G-C	Hetero	INTERGENIC
SBS	Chr3	24561490	A-G	Homo	INTERGENIC
SBS	Chr3	31629614	C-T	Hetero	INTERGENIC
SBS	Chr3	34153363	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	7859850	G-A	Homo	INTERGENIC
SBS	Chr4	23852627	G-T	Hetero	INTERGENIC
SBS	Chr5	12896777	T-C	Hetero	INTERGENIC
SBS	Chr5	14554489	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g110900
SBS	Chr5	15398121	G-A	Hetero	INTERGENIC
SBS	Chr5	16981409	A-G	Hetero	INTERGENIC
SBS	Chr5	19130798	G-A	Hetero	INTRON
SBS	Chr5	21485687	G-C	Hetero	INTRON
SBS	Chr5	28232427	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g261800
SBS	Chr6	7962025	G-C	Homo	INTERGENIC
SBS	Chr6	12863464	C-T	Hetero	INTERGENIC
SBS	Chr6	21525043	G-C	Hetero	INTERGENIC
SBS	Chr6	21699162	G-A	Hetero	INTRON
SBS	Chr6	21853670	A-C	Hetero	INTERGENIC
SBS	Chr6	23314152	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	24426049	G-A	Hetero	INTERGENIC
SBS	Chr6	25070418	T-C	Hetero	INTERGENIC
SBS	Chr6	28012337	G-A	Homo	INTERGENIC
SBS	Chr6	28625355	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g263200
SBS	Chr6	30314669	G-T	Hetero	INTERGENIC
SBS	Chr7	17406203	T-A	Hetero	INTRON
SBS	Chr7	18087338	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr7	18928482	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	20848239	C-A	Hetero	INTRON
SBS	Chr7	21888138	G-C	Hetero	INTERGENIC
SBS	Chr8	21288407	G-A	Hetero	INTERGENIC
SBS	Chr8	23326990	C-T	Hetero	INTERGENIC
SBS	Chr8	26689082	G-A	Hetero	SPLICE_SITE_DONOR	OsKitaake08g215201
SBS	Chr8	26689083	T-A	Hetero	SPLICE_SITE_DONOR	OsKitaake08g215201
SBS	Chr9	11260721	C-A	Hetero	INTRON
SBS	Chr9	16264766	C-G	Hetero	INTERGENIC
SBS	Chr9	17199690	A-G	Hetero	INTERGENIC
SBS	Chr10	435001	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g003000
SBS	Chr10	8158064	A-G	Hetero	INTERGENIC
SBS	Chr10	8573782	G-T	Hetero	INTERGENIC
SBS	Chr10	19454966	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	6861874	G-T	Homo	INTERGENIC
SBS	Chr11	16912860	T-A	Hetero	INTERGENIC
SBS	Chr11	18561847	C-T	Hetero	INTRON
SBS	Chr12	8395985	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4581599	4581609	10
Deletion	Chr1	5292407	5292422	15
Deletion	Chr1	8714282	8714288	6
Deletion	Chr3	10028547	10028548	1
Deletion	Chr3	13823417	13823420	3
Deletion	Chr11	17717882	17718008	126
Deletion	Chr11	18986001	19036000	49999	4
Deletion	Chr9	19991864	19991866	2
Deletion	Chr11	21650422	21650423	1
Deletion	Chr1	24836139	24836141	2	OsKitaake01g240100
Deletion	Chr5	25491001	25522000	30999	4
Deletion	Chr1	31157355	31157363	8
Deletion	Chr3	33232106	33232107	1
Deletion	Chr1	39266844	39266847	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	17830766	17879666
Inversion	Chr11	17830772	17879676
Inversion	Chr11	18937231	19035288	OsKitaake11g147600
Inversion	Chr11	18937232	18988799	OsKitaake11g147600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes