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Mutant Information

Mutant Name	FN2740-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2740-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2259068 T-C Homo INTRON
SBS Chr1 4538599 C-T Hetero INTERGENIC
SBS Chr1 6235549 C-G Hetero UTR_3_PRIME
SBS Chr1 11591205 T-C Hetero INTERGENIC
SBS Chr1 32045402 G-A Hetero INTERGENIC
SBS Chr1 34966857 A-C Hetero INTERGENIC
SBS Chr1 37338246 T-C Hetero INTRON
SBS Chr2 7338068 G-A Hetero INTERGENIC
SBS Chr2 9836845 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g119400
SBS Chr2 12729360 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g142200
SBS Chr2 14048027 G-A Hetero INTERGENIC
SBS Chr2 14642691 C-T Hetero INTERGENIC
SBS Chr2 20632353 C-G Hetero INTERGENIC
SBS Chr2 31021474 G-A Hetero INTERGENIC
SBS Chr2 31021475 G-A Hetero INTERGENIC
SBS Chr3 8540789 T-C Hetero INTERGENIC
SBS Chr3 19450441 T-C Hetero INTERGENIC
SBS Chr3 22486308 T-A Hetero INTERGENIC
SBS Chr3 22486314 A-T Hetero INTERGENIC
SBS Chr3 25921778 C-T Hetero INTERGENIC
SBS Chr3 32041800 T-C Hetero INTERGENIC
SBS Chr4 868016 G-A Hetero INTERGENIC
SBS Chr4 7566834 G-T Hetero INTERGENIC
SBS Chr4 8490132 C-T Hetero INTERGENIC
SBS Chr4 10175374 G-A Hetero INTERGENIC
SBS Chr4 10503403 C-G Hetero INTERGENIC
SBS Chr4 12038130 A-G Hetero INTERGENIC
SBS Chr4 15210523 A-T Hetero INTERGENIC
SBS Chr4 19037804 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g095900
SBS Chr5 4307825 T-A Homo INTERGENIC
SBS Chr5 13447235 C-T Hetero INTERGENIC
SBS Chr5 16823775 G-A Hetero INTERGENIC
SBS Chr5 19451865 C-A Hetero INTRON
SBS Chr5 19477582 C-A Hetero INTERGENIC
SBS Chr5 21233694 C-T Hetero INTERGENIC
SBS Chr6 5573902 G-T Homo INTERGENIC
SBS Chr6 7621239 T-A Hetero INTERGENIC
SBS Chr6 12281849 C-A Hetero INTERGENIC
SBS Chr6 19363762 T-G Hetero INTRON
SBS Chr6 21851218 G-A Homo INTERGENIC
SBS Chr7 1836048 A-C Hetero SYNONYMOUS_CODING
SBS Chr7 7982901 G-A Hetero INTERGENIC
SBS Chr7 17330908 A-G Hetero UTR_5_PRIME
SBS Chr7 21496092 T-C Hetero INTERGENIC
SBS Chr8 7888500 T-C Homo INTERGENIC
SBS Chr8 13287332 T-C Homo INTERGENIC
SBS Chr8 16643166 G-T Homo INTERGENIC
SBS Chr9 1894634 C-T Hetero INTERGENIC
SBS Chr9 3813447 T-G Hetero INTRON
SBS Chr9 10164255 T-A Hetero INTERGENIC
SBS Chr11 11092756 C-T Hetero INTERGENIC
SBS Chr12 4850875 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g062700
SBS Chr12 5634901 A-T Homo INTERGENIC
SBS Chr12 10350888 C-A Homo INTRON
SBS Chr12 12178753 C-T Homo INTERGENIC
SBS Chr12 18575903 C-A Homo NON_SYNONYMOUS_CODING OsKitaake12g136600
SBS Chr12 26781851 T-A Homo INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1553270 1553278 8
Deletion Chr4 5517001 5735000 217999 9
Deletion Chr4 6740829 6740837 8
Deletion Chr11 8198001 8225000 26999 2
Deletion Chr6 11111920 11111925 5
Deletion Chr10 11941025 11941028 3
Deletion Chr10 11954927 11954929 2
Deletion Chr5 12891001 12957000 65999 4
Deletion Chr5 12999001 13012000 12999
Deletion Chr6 17804962 17804963 1
Deletion Chr12 18497703 18497709 6
Deletion Chr6 19731046 19731053 7
Deletion Chr2 20979183 20979185 2
Deletion Chr7 21032608 21032611 3 OsKitaake07g173600
Deletion Chr5 22599499 22599501 2
Deletion Chr8 23105001 23117000 11999 2
Deletion Chr8 23543001 23562000 18999
Deletion Chr5 23690290 23690292 2
Deletion Chr3 24570598 24570604 6
Deletion Chr8 27239839 27239840 1
Deletion Chr1 35153136 35153137 1 OsKitaake01g370800
Deletion Chr1 40295845 40295850 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 4151505 4151508 2
Insertion Chr6 8797495 8797498 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8198684 9130095
Inversion Chr11 8225004 9130099
Inversion Chr8 23542840 24177241 OsKitaake08g186600
Inversion Chr8 23562465 24177245 OsKitaake08g186600

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 12890579 Chr3 25073143
Translocation Chr5 13011096 Chr3 25067945
Translocation Chr10 19489263 Chr4 5734009
Translocation Chr10 19489267 Chr4 5734175

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2259068	T-C	Homo	INTRON
SBS	Chr1	4538599	C-T	Hetero	INTERGENIC
SBS	Chr1	6235549	C-G	Hetero	UTR_3_PRIME
SBS	Chr1	11591205	T-C	Hetero	INTERGENIC
SBS	Chr1	32045402	G-A	Hetero	INTERGENIC
SBS	Chr1	34966857	A-C	Hetero	INTERGENIC
SBS	Chr1	37338246	T-C	Hetero	INTRON
SBS	Chr2	7338068	G-A	Hetero	INTERGENIC
SBS	Chr2	9836845	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g119400
SBS	Chr2	12729360	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g142200
SBS	Chr2	14048027	G-A	Hetero	INTERGENIC
SBS	Chr2	14642691	C-T	Hetero	INTERGENIC
SBS	Chr2	20632353	C-G	Hetero	INTERGENIC
SBS	Chr2	31021474	G-A	Hetero	INTERGENIC
SBS	Chr2	31021475	G-A	Hetero	INTERGENIC
SBS	Chr3	8540789	T-C	Hetero	INTERGENIC
SBS	Chr3	19450441	T-C	Hetero	INTERGENIC
SBS	Chr3	22486308	T-A	Hetero	INTERGENIC
SBS	Chr3	22486314	A-T	Hetero	INTERGENIC
SBS	Chr3	25921778	C-T	Hetero	INTERGENIC
SBS	Chr3	32041800	T-C	Hetero	INTERGENIC
SBS	Chr4	868016	G-A	Hetero	INTERGENIC
SBS	Chr4	7566834	G-T	Hetero	INTERGENIC
SBS	Chr4	8490132	C-T	Hetero	INTERGENIC
SBS	Chr4	10175374	G-A	Hetero	INTERGENIC
SBS	Chr4	10503403	C-G	Hetero	INTERGENIC
SBS	Chr4	12038130	A-G	Hetero	INTERGENIC
SBS	Chr4	15210523	A-T	Hetero	INTERGENIC
SBS	Chr4	19037804	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g095900
SBS	Chr5	4307825	T-A	Homo	INTERGENIC
SBS	Chr5	13447235	C-T	Hetero	INTERGENIC
SBS	Chr5	16823775	G-A	Hetero	INTERGENIC
SBS	Chr5	19451865	C-A	Hetero	INTRON
SBS	Chr5	19477582	C-A	Hetero	INTERGENIC
SBS	Chr5	21233694	C-T	Hetero	INTERGENIC
SBS	Chr6	5573902	G-T	Homo	INTERGENIC
SBS	Chr6	7621239	T-A	Hetero	INTERGENIC
SBS	Chr6	12281849	C-A	Hetero	INTERGENIC
SBS	Chr6	19363762	T-G	Hetero	INTRON
SBS	Chr6	21851218	G-A	Homo	INTERGENIC
SBS	Chr7	1836048	A-C	Hetero	SYNONYMOUS_CODING
SBS	Chr7	7982901	G-A	Hetero	INTERGENIC
SBS	Chr7	17330908	A-G	Hetero	UTR_5_PRIME
SBS	Chr7	21496092	T-C	Hetero	INTERGENIC
SBS	Chr8	7888500	T-C	Homo	INTERGENIC
SBS	Chr8	13287332	T-C	Homo	INTERGENIC
SBS	Chr8	16643166	G-T	Homo	INTERGENIC
SBS	Chr9	1894634	C-T	Hetero	INTERGENIC
SBS	Chr9	3813447	T-G	Hetero	INTRON
SBS	Chr9	10164255	T-A	Hetero	INTERGENIC
SBS	Chr11	11092756	C-T	Hetero	INTERGENIC
SBS	Chr12	4850875	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g062700
SBS	Chr12	5634901	A-T	Homo	INTERGENIC
SBS	Chr12	10350888	C-A	Homo	INTRON
SBS	Chr12	12178753	C-T	Homo	INTERGENIC
SBS	Chr12	18575903	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g136600
SBS	Chr12	26781851	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1553270	1553278	8
Deletion	Chr4	5517001	5735000	217999	9
Deletion	Chr4	6740829	6740837	8
Deletion	Chr11	8198001	8225000	26999	2
Deletion	Chr6	11111920	11111925	5
Deletion	Chr10	11941025	11941028	3
Deletion	Chr10	11954927	11954929	2
Deletion	Chr5	12891001	12957000	65999	4
Deletion	Chr5	12999001	13012000	12999
Deletion	Chr6	17804962	17804963	1
Deletion	Chr12	18497703	18497709	6
Deletion	Chr6	19731046	19731053	7
Deletion	Chr2	20979183	20979185	2
Deletion	Chr7	21032608	21032611	3	OsKitaake07g173600
Deletion	Chr5	22599499	22599501	2
Deletion	Chr8	23105001	23117000	11999	2
Deletion	Chr8	23543001	23562000	18999
Deletion	Chr5	23690290	23690292	2
Deletion	Chr3	24570598	24570604	6
Deletion	Chr8	27239839	27239840	1
Deletion	Chr1	35153136	35153137	1	OsKitaake01g370800
Deletion	Chr1	40295845	40295850	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8198684	9130095
Inversion	Chr11	8225004	9130099
Inversion	Chr8	23542840	24177241	OsKitaake08g186600
Inversion	Chr8	23562465	24177245	OsKitaake08g186600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes