Search Kitaake

Mutant Information

Mutant Name	FN2742-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2742-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 52

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3952258 C-G Homo INTERGENIC
SBS Chr1 6979257 C-G Hetero INTERGENIC
SBS Chr1 7451482 A-T Hetero INTRON
SBS Chr1 12600017 C-T Hetero INTERGENIC
SBS Chr1 12895336 T-C Hetero INTERGENIC
SBS Chr1 18111282 T-C Hetero INTRON
SBS Chr1 44178443 G-T Hetero INTRON
SBS Chr2 453910 T-C Hetero INTERGENIC
SBS Chr2 7628549 G-A Hetero INTERGENIC
SBS Chr3 23830107 C-T Homo INTERGENIC
SBS Chr3 29921562 G-T Hetero INTRON
SBS Chr3 36437730 C-A Hetero INTERGENIC
SBS Chr3 36778971 G-C Hetero INTRON
SBS Chr4 5096185 A-T Hetero INTRON
SBS Chr4 5096186 A-T Hetero INTRON
SBS Chr4 11640149 T-A Hetero INTERGENIC
SBS Chr4 16152259 C-T Hetero INTERGENIC
SBS Chr4 25455411 G-A Hetero INTRON
SBS Chr4 29038454 A-T Hetero INTERGENIC
SBS Chr4 32612128 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g261900
SBS Chr5 9366858 C-G Hetero INTERGENIC
SBS Chr5 14095272 G-A Hetero INTERGENIC
SBS Chr5 25719996 T-G Hetero INTERGENIC
SBS Chr6 5533852 A-T Hetero INTRON
SBS Chr6 10567211 G-A Hetero INTERGENIC
SBS Chr6 27374114 G-T Homo INTERGENIC
SBS Chr7 231332 G-A Hetero INTERGENIC
SBS Chr7 231333 A-T Hetero INTERGENIC
SBS Chr7 231335 G-T Hetero INTERGENIC
SBS Chr7 5381755 C-A Hetero INTERGENIC
SBS Chr7 14285045 G-C Hetero INTERGENIC
SBS Chr8 3215175 G-A Hetero INTERGENIC
SBS Chr8 3675996 A-T Hetero INTERGENIC
SBS Chr8 3675997 A-T Hetero INTERGENIC
SBS Chr8 3676016 G-A Hetero INTERGENIC
SBS Chr8 17254818 C-G Homo INTERGENIC
SBS Chr8 19933433 T-A Hetero INTERGENIC
SBS Chr8 21168721 C-T Hetero INTERGENIC
SBS Chr8 21168727 G-A Hetero INTERGENIC
SBS Chr8 27971478 C-T Hetero INTERGENIC
SBS Chr9 9412536 G-A Homo INTERGENIC
SBS Chr9 15146386 A-G Hetero INTRON
SBS Chr10 265807 G-C Hetero INTERGENIC
SBS Chr10 5212256 C-A Homo INTERGENIC
SBS Chr10 19382768 T-C Homo INTERGENIC
SBS Chr10 19775966 T-G Homo INTRON
SBS Chr11 524197 A-T Hetero INTRON
SBS Chr11 3960486 C-T Hetero INTERGENIC
SBS Chr11 12039408 G-A Hetero INTERGENIC
SBS Chr11 19081646 A-G Hetero INTERGENIC
SBS Chr11 26424662 G-T Hetero INTERGENIC
SBS Chr12 7661159 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 369001 457000 87999 15
Deletion Chr7 462001 597000 134999 22
Deletion Chr11 2993426 2993432 6
Deletion Chr4 9595494 9595512 18
Deletion Chr9 9983637 9983646 9
Deletion Chr4 10252001 10279000 26999 3
Deletion Chr4 10282001 10296000 13999
Deletion Chr2 14359020 14359021 1
Deletion Chr9 14586001 14595000 8999 OsKitaake09g099400
Deletion Chr11 17206056 17206066 10
Deletion Chr8 20145034 20145037 3
Deletion Chr8 21355066 21355076 10
Deletion Chr12 24516316 24516321 5
Deletion Chr6 25027748 25027767 19
Deletion Chr12 25142001 25151000 8999 2
Deletion Chr8 26647459 26647460 1
Deletion Chr8 27855953 27855960 7

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 20023231 20023234 2
Insertion Chr4 26154734 26154737 2
Insertion Chr6 16507729 16507732 2
Insertion Chr9 17141437 17141440 2
Insertion Chr9 20216932 20216935 2
Insertion Chr11 22703057 22703060 2

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 4430430 Chr9 218026
Translocation Chr8 27022516 Chr6 18453136 2
Translocation Chr8 27023814 Chr6 18453134 2
Translocation Chr8 29146545 Chr7 596858 OsKitaake07g006700
Translocation Chr8 29158957 Chr7 596530

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3952258	C-G	Homo	INTERGENIC
SBS	Chr1	6979257	C-G	Hetero	INTERGENIC
SBS	Chr1	7451482	A-T	Hetero	INTRON
SBS	Chr1	12600017	C-T	Hetero	INTERGENIC
SBS	Chr1	12895336	T-C	Hetero	INTERGENIC
SBS	Chr1	18111282	T-C	Hetero	INTRON
SBS	Chr1	44178443	G-T	Hetero	INTRON
SBS	Chr2	453910	T-C	Hetero	INTERGENIC
SBS	Chr2	7628549	G-A	Hetero	INTERGENIC
SBS	Chr3	23830107	C-T	Homo	INTERGENIC
SBS	Chr3	29921562	G-T	Hetero	INTRON
SBS	Chr3	36437730	C-A	Hetero	INTERGENIC
SBS	Chr3	36778971	G-C	Hetero	INTRON
SBS	Chr4	5096185	A-T	Hetero	INTRON
SBS	Chr4	5096186	A-T	Hetero	INTRON
SBS	Chr4	11640149	T-A	Hetero	INTERGENIC
SBS	Chr4	16152259	C-T	Hetero	INTERGENIC
SBS	Chr4	25455411	G-A	Hetero	INTRON
SBS	Chr4	29038454	A-T	Hetero	INTERGENIC
SBS	Chr4	32612128	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g261900
SBS	Chr5	9366858	C-G	Hetero	INTERGENIC
SBS	Chr5	14095272	G-A	Hetero	INTERGENIC
SBS	Chr5	25719996	T-G	Hetero	INTERGENIC
SBS	Chr6	5533852	A-T	Hetero	INTRON
SBS	Chr6	10567211	G-A	Hetero	INTERGENIC
SBS	Chr6	27374114	G-T	Homo	INTERGENIC
SBS	Chr7	231332	G-A	Hetero	INTERGENIC
SBS	Chr7	231333	A-T	Hetero	INTERGENIC
SBS	Chr7	231335	G-T	Hetero	INTERGENIC
SBS	Chr7	5381755	C-A	Hetero	INTERGENIC
SBS	Chr7	14285045	G-C	Hetero	INTERGENIC
SBS	Chr8	3215175	G-A	Hetero	INTERGENIC
SBS	Chr8	3675996	A-T	Hetero	INTERGENIC
SBS	Chr8	3675997	A-T	Hetero	INTERGENIC
SBS	Chr8	3676016	G-A	Hetero	INTERGENIC
SBS	Chr8	17254818	C-G	Homo	INTERGENIC
SBS	Chr8	19933433	T-A	Hetero	INTERGENIC
SBS	Chr8	21168721	C-T	Hetero	INTERGENIC
SBS	Chr8	21168727	G-A	Hetero	INTERGENIC
SBS	Chr8	27971478	C-T	Hetero	INTERGENIC
SBS	Chr9	9412536	G-A	Homo	INTERGENIC
SBS	Chr9	15146386	A-G	Hetero	INTRON
SBS	Chr10	265807	G-C	Hetero	INTERGENIC
SBS	Chr10	5212256	C-A	Homo	INTERGENIC
SBS	Chr10	19382768	T-C	Homo	INTERGENIC
SBS	Chr10	19775966	T-G	Homo	INTRON
SBS	Chr11	524197	A-T	Hetero	INTRON
SBS	Chr11	3960486	C-T	Hetero	INTERGENIC
SBS	Chr11	12039408	G-A	Hetero	INTERGENIC
SBS	Chr11	19081646	A-G	Hetero	INTERGENIC
SBS	Chr11	26424662	G-T	Hetero	INTERGENIC
SBS	Chr12	7661159	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	369001	457000	87999	15
Deletion	Chr7	462001	597000	134999	22
Deletion	Chr11	2993426	2993432	6
Deletion	Chr4	9595494	9595512	18
Deletion	Chr9	9983637	9983646	9
Deletion	Chr4	10252001	10279000	26999	3
Deletion	Chr4	10282001	10296000	13999
Deletion	Chr2	14359020	14359021	1
Deletion	Chr9	14586001	14595000	8999	OsKitaake09g099400
Deletion	Chr11	17206056	17206066	10
Deletion	Chr8	20145034	20145037	3
Deletion	Chr8	21355066	21355076	10
Deletion	Chr12	24516316	24516321	5
Deletion	Chr6	25027748	25027767	19
Deletion	Chr12	25142001	25151000	8999	2
Deletion	Chr8	26647459	26647460	1
Deletion	Chr8	27855953	27855960	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	4430430	Chr9	218026
Translocation	Chr8	27022516	Chr6	18453136	2
Translocation	Chr8	27023814	Chr6	18453134	2
Translocation	Chr8	29146545	Chr7	596858	OsKitaake07g006700
Translocation	Chr8	29158957	Chr7	596530

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes