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Mutant Information

Mutant Name	FN2750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2750-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 25044438 C-T Homo INTERGENIC
SBS Chr2 6890720 G-T Hetero INTERGENIC
SBS Chr2 21075954 G-A Hetero INTRON
SBS Chr2 21145367 G-A Hetero INTERGENIC
SBS Chr2 30370988 A-T Hetero INTERGENIC
SBS Chr2 31778234 T-C Hetero INTERGENIC
SBS Chr3 9231792 G-A Hetero INTERGENIC
SBS Chr3 11030087 A-T Homo INTERGENIC
SBS Chr3 13738917 C-T Hetero INTERGENIC
SBS Chr3 23477263 C-T Homo INTERGENIC
SBS Chr4 5042176 T-A Homo INTERGENIC
SBS Chr4 5113584 C-G Hetero INTERGENIC
SBS Chr4 17214433 A-G Homo INTERGENIC
SBS Chr5 2645324 G-A Hetero INTERGENIC
SBS Chr5 21257280 G-A Hetero INTERGENIC
SBS Chr5 22751252 A-T Hetero UTR_5_PRIME
SBS Chr5 29903441 T-G Hetero INTRON
SBS Chr6 11601447 G-A Hetero INTERGENIC
SBS Chr7 6899195 G-A Hetero INTERGENIC
SBS Chr7 13476693 G-A Hetero INTERGENIC
SBS Chr8 2250826 A-C Hetero INTERGENIC
SBS Chr8 14437322 A-G Hetero INTERGENIC
SBS Chr10 10684113 T-C Hetero INTERGENIC
SBS Chr11 5029349 C-T Hetero INTERGENIC
SBS Chr11 22890940 T-G Homo INTRON
SBS Chr11 27489227 G-A Hetero INTERGENIC
SBS Chr11 29438472 C-T Hetero INTERGENIC
SBS Chr12 2344495 G-A Hetero INTERGENIC
SBS Chr12 3529022 G-A Hetero SYNONYMOUS_CODING

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 304331 304332 1
Deletion Chr4 2201090 2201091 1
Deletion Chr4 9641640 9641644 4
Deletion Chr8 10683908 10683912 4
Deletion Chr1 14536655 14536659 4
Deletion Chr8 20062618 20062620 2
Deletion Chr8 22532667 22532670 3
Deletion Chr10 22878129 22878135 6
Deletion Chr1 39339712 39339715 3

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 15149474 15149477 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 17367610 17382868
Inversion Chr1 17367631 17382874

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25595635 Chr5 26875859

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25044438	C-T	Homo	INTERGENIC
SBS	Chr2	6890720	G-T	Hetero	INTERGENIC
SBS	Chr2	21075954	G-A	Hetero	INTRON
SBS	Chr2	21145367	G-A	Hetero	INTERGENIC
SBS	Chr2	30370988	A-T	Hetero	INTERGENIC
SBS	Chr2	31778234	T-C	Hetero	INTERGENIC
SBS	Chr3	9231792	G-A	Hetero	INTERGENIC
SBS	Chr3	11030087	A-T	Homo	INTERGENIC
SBS	Chr3	13738917	C-T	Hetero	INTERGENIC
SBS	Chr3	23477263	C-T	Homo	INTERGENIC
SBS	Chr4	5042176	T-A	Homo	INTERGENIC
SBS	Chr4	5113584	C-G	Hetero	INTERGENIC
SBS	Chr4	17214433	A-G	Homo	INTERGENIC
SBS	Chr5	2645324	G-A	Hetero	INTERGENIC
SBS	Chr5	21257280	G-A	Hetero	INTERGENIC
SBS	Chr5	22751252	A-T	Hetero	UTR_5_PRIME
SBS	Chr5	29903441	T-G	Hetero	INTRON
SBS	Chr6	11601447	G-A	Hetero	INTERGENIC
SBS	Chr7	6899195	G-A	Hetero	INTERGENIC
SBS	Chr7	13476693	G-A	Hetero	INTERGENIC
SBS	Chr8	2250826	A-C	Hetero	INTERGENIC
SBS	Chr8	14437322	A-G	Hetero	INTERGENIC
SBS	Chr10	10684113	T-C	Hetero	INTERGENIC
SBS	Chr11	5029349	C-T	Hetero	INTERGENIC
SBS	Chr11	22890940	T-G	Homo	INTRON
SBS	Chr11	27489227	G-A	Hetero	INTERGENIC
SBS	Chr11	29438472	C-T	Hetero	INTERGENIC
SBS	Chr12	2344495	G-A	Hetero	INTERGENIC
SBS	Chr12	3529022	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	304331	304332	1
Deletion	Chr4	2201090	2201091	1
Deletion	Chr4	9641640	9641644	4
Deletion	Chr8	10683908	10683912	4
Deletion	Chr1	14536655	14536659	4
Deletion	Chr8	20062618	20062620	2
Deletion	Chr8	22532667	22532670	3
Deletion	Chr10	22878129	22878135	6
Deletion	Chr1	39339712	39339715	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	17367610	17382868
Inversion	Chr1	17367631	17382874

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes