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Mutant Information

Mutant Name	FN2751-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2751-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12406605 C-T Hetero INTERGENIC
SBS Chr1 15470407 G-A Hetero INTRON
SBS Chr1 15704713 C-T Hetero INTERGENIC
SBS Chr1 19811094 C-T Hetero INTERGENIC
SBS Chr1 26281073 T-C Homo INTERGENIC
SBS Chr1 35087444 G-A Hetero INTERGENIC
SBS Chr2 4142166 G-A Homo INTERGENIC
SBS Chr2 13347749 G-T Homo INTRON
SBS Chr2 13347750 C-T Homo INTRON
SBS Chr2 16492297 G-A Hetero INTERGENIC
SBS Chr2 22285008 A-G Homo UTR_3_PRIME
SBS Chr2 28798586 T-G Hetero INTERGENIC
SBS Chr3 14637200 C-T Homo INTERGENIC
SBS Chr3 23716274 C-T Homo SYNONYMOUS_CODING
SBS Chr3 26371229 C-T Hetero INTERGENIC
SBS Chr4 8020029 A-G Hetero INTERGENIC
SBS Chr4 13011428 A-T Hetero INTERGENIC
SBS Chr4 17267804 C-A Hetero INTERGENIC
SBS Chr4 34370932 C-T Hetero INTERGENIC
SBS Chr4 34475555 C-T Hetero INTERGENIC
SBS Chr5 2903408 A-C Hetero UTR_3_PRIME
SBS Chr5 5701281 C-T Homo INTERGENIC
SBS Chr5 24569638 C-A Homo INTERGENIC
SBS Chr6 16136646 C-T Hetero INTERGENIC
SBS Chr7 17294592 A-T Hetero INTERGENIC
SBS Chr7 24821760 G-T Hetero INTRON
SBS Chr8 1523321 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g019000
SBS Chr8 7821244 G-T Hetero INTERGENIC
SBS Chr8 7821248 C-A Hetero INTERGENIC
SBS Chr8 7821249 G-A Hetero INTERGENIC
SBS Chr8 7930732 T-C Hetero INTERGENIC
SBS Chr8 8968268 G-A Hetero INTERGENIC
SBS Chr8 12316379 A-C Hetero INTERGENIC
SBS Chr8 14795606 C-T Hetero INTERGENIC
SBS Chr8 20899634 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 28611629 G-T Hetero INTRON
SBS Chr9 10240741 G-A Hetero INTERGENIC
SBS Chr10 16425071 T-A Hetero UTR_5_PRIME
SBS Chr11 6284288 C-T Homo INTERGENIC
SBS Chr11 23955844 T-C Homo INTERGENIC
SBS Chr11 26805151 C-T Hetero INTERGENIC
SBS Chr12 1715353 A-G Hetero SPLICE_SITE_DONOR OsKitaake12g025900
SBS Chr12 2888466 C-T Homo INTERGENIC
SBS Chr12 3231519 T-A Hetero INTERGENIC
SBS Chr12 3751917 C-T Hetero INTERGENIC
SBS Chr12 4706995 C-T Hetero INTERGENIC
SBS Chr12 5404082 C-T Hetero INTERGENIC
SBS Chr12 7312394 C-T Hetero INTERGENIC
SBS Chr12 14035950 T-C Hetero INTERGENIC
SBS Chr12 14112418 C-T Hetero INTERGENIC
SBS Chr12 17058947 G-A Hetero SYNONYMOUS_CODING

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 4966803 4966806 3
Deletion Chr6 7164001 7170000 5999 OsKitaake06g092400
Deletion Chr11 7777469 7777470 1
Deletion Chr7 7966030 7966031 1
Deletion Chr6 10288908 10288910 2
Deletion Chr4 11945010 11945011 1
Deletion Chr6 13708647 13708655 8
Deletion Chr2 16482248 16482264 16
Deletion Chr12 16691001 16713000 21999 OsKitaake12g125200
Deletion Chr7 22588402 22588410 8
Deletion Chr10 22946138 22946140 2
Deletion Chr3 24559071 24559089 18
Deletion Chr1 25346789 25346790 1
Deletion Chr11 27419001 27615000 195999 12
Deletion Chr4 29984001 30015000 30999 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 35509979 35509984 4
Insertion Chr3 3732206 3732209 2
Insertion Chr4 20651275 20651278 2
Insertion Chr6 5878477 5878480 2
Insertion Chr9 7344810 7344814 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 7123941 7163980 OsKitaake06g091700
Inversion Chr6 7123949 7170270 OsKitaake06g091700
Inversion Chr12 16711101 17038136

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 21773420 Chr7 14752721

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12406605	C-T	Hetero	INTERGENIC
SBS	Chr1	15470407	G-A	Hetero	INTRON
SBS	Chr1	15704713	C-T	Hetero	INTERGENIC
SBS	Chr1	19811094	C-T	Hetero	INTERGENIC
SBS	Chr1	26281073	T-C	Homo	INTERGENIC
SBS	Chr1	35087444	G-A	Hetero	INTERGENIC
SBS	Chr2	4142166	G-A	Homo	INTERGENIC
SBS	Chr2	13347749	G-T	Homo	INTRON
SBS	Chr2	13347750	C-T	Homo	INTRON
SBS	Chr2	16492297	G-A	Hetero	INTERGENIC
SBS	Chr2	22285008	A-G	Homo	UTR_3_PRIME
SBS	Chr2	28798586	T-G	Hetero	INTERGENIC
SBS	Chr3	14637200	C-T	Homo	INTERGENIC
SBS	Chr3	23716274	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	26371229	C-T	Hetero	INTERGENIC
SBS	Chr4	8020029	A-G	Hetero	INTERGENIC
SBS	Chr4	13011428	A-T	Hetero	INTERGENIC
SBS	Chr4	17267804	C-A	Hetero	INTERGENIC
SBS	Chr4	34370932	C-T	Hetero	INTERGENIC
SBS	Chr4	34475555	C-T	Hetero	INTERGENIC
SBS	Chr5	2903408	A-C	Hetero	UTR_3_PRIME
SBS	Chr5	5701281	C-T	Homo	INTERGENIC
SBS	Chr5	24569638	C-A	Homo	INTERGENIC
SBS	Chr6	16136646	C-T	Hetero	INTERGENIC
SBS	Chr7	17294592	A-T	Hetero	INTERGENIC
SBS	Chr7	24821760	G-T	Hetero	INTRON
SBS	Chr8	1523321	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g019000
SBS	Chr8	7821244	G-T	Hetero	INTERGENIC
SBS	Chr8	7821248	C-A	Hetero	INTERGENIC
SBS	Chr8	7821249	G-A	Hetero	INTERGENIC
SBS	Chr8	7930732	T-C	Hetero	INTERGENIC
SBS	Chr8	8968268	G-A	Hetero	INTERGENIC
SBS	Chr8	12316379	A-C	Hetero	INTERGENIC
SBS	Chr8	14795606	C-T	Hetero	INTERGENIC
SBS	Chr8	20899634	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	28611629	G-T	Hetero	INTRON
SBS	Chr9	10240741	G-A	Hetero	INTERGENIC
SBS	Chr10	16425071	T-A	Hetero	UTR_5_PRIME
SBS	Chr11	6284288	C-T	Homo	INTERGENIC
SBS	Chr11	23955844	T-C	Homo	INTERGENIC
SBS	Chr11	26805151	C-T	Hetero	INTERGENIC
SBS	Chr12	1715353	A-G	Hetero	SPLICE_SITE_DONOR	OsKitaake12g025900
SBS	Chr12	2888466	C-T	Homo	INTERGENIC
SBS	Chr12	3231519	T-A	Hetero	INTERGENIC
SBS	Chr12	3751917	C-T	Hetero	INTERGENIC
SBS	Chr12	4706995	C-T	Hetero	INTERGENIC
SBS	Chr12	5404082	C-T	Hetero	INTERGENIC
SBS	Chr12	7312394	C-T	Hetero	INTERGENIC
SBS	Chr12	14035950	T-C	Hetero	INTERGENIC
SBS	Chr12	14112418	C-T	Hetero	INTERGENIC
SBS	Chr12	17058947	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	4966803	4966806	3
Deletion	Chr6	7164001	7170000	5999	OsKitaake06g092400
Deletion	Chr11	7777469	7777470	1
Deletion	Chr7	7966030	7966031	1
Deletion	Chr6	10288908	10288910	2
Deletion	Chr4	11945010	11945011	1
Deletion	Chr6	13708647	13708655	8
Deletion	Chr2	16482248	16482264	16
Deletion	Chr12	16691001	16713000	21999	OsKitaake12g125200
Deletion	Chr7	22588402	22588410	8
Deletion	Chr10	22946138	22946140	2
Deletion	Chr3	24559071	24559089	18
Deletion	Chr1	25346789	25346790	1
Deletion	Chr11	27419001	27615000	195999	12
Deletion	Chr4	29984001	30015000	30999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7123941	7163980	OsKitaake06g091700
Inversion	Chr6	7123949	7170270	OsKitaake06g091700
Inversion	Chr12	16711101	17038136

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes