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Mutant Information

Mutant Name	FN2752-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2752-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 90

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5827172 T-C Hetero INTERGENIC
SBS Chr2 14680157 G-C Hetero UTR_5_PRIME
SBS Chr2 22693732 C-G Hetero INTERGENIC
SBS Chr2 25119707 G-A Hetero INTERGENIC
SBS Chr3 768482 T-A Homo INTERGENIC
SBS Chr3 2869340 A-C Homo INTERGENIC
SBS Chr3 4785166 A-C Homo INTERGENIC
SBS Chr3 7243754 T-C Hetero UTR_5_PRIME
SBS Chr3 7710330 C-A Hetero INTERGENIC
SBS Chr3 15361692 G-C Homo INTERGENIC
SBS Chr3 21705905 T-A Hetero INTERGENIC
SBS Chr3 23504522 G-A Hetero INTERGENIC
SBS Chr3 23791540 G-A Homo INTERGENIC
SBS Chr3 37184241 A-C Hetero INTERGENIC
SBS Chr4 5073239 A-G Homo INTERGENIC
SBS Chr4 10105671 G-A Homo INTERGENIC
SBS Chr4 11236293 C-T Homo INTERGENIC
SBS Chr4 11258418 G-A Hetero INTERGENIC
SBS Chr4 12828028 C-T Hetero INTERGENIC
SBS Chr4 16118090 G-A Homo INTERGENIC
SBS Chr4 35499401 G-T Homo START_GAINED
SBS Chr5 2437995 C-T Hetero INTRON
SBS Chr5 20033310 A-G Hetero INTERGENIC
SBS Chr5 24806849 T-A Hetero INTERGENIC
SBS Chr5 24997862 C-A Hetero INTERGENIC
SBS Chr6 16956451 G-A Hetero INTERGENIC
SBS Chr6 21957804 G-A Hetero INTERGENIC
SBS Chr6 31031374 C-T Homo INTERGENIC
SBS Chr7 11717287 C-T Hetero INTERGENIC
SBS Chr7 11717288 C-T Hetero INTERGENIC
SBS Chr7 17685861 T-C Hetero UTR_3_PRIME
SBS Chr7 23948977 T-A Homo INTRON
SBS Chr8 4361993 G-A Homo INTERGENIC
SBS Chr8 12570123 C-T Homo INTERGENIC
SBS Chr8 14331264 A-C Hetero INTERGENIC
SBS Chr8 26294080 C-T Hetero INTERGENIC
SBS Chr9 13435251 T-G Hetero INTERGENIC
SBS Chr10 9427997 T-C Hetero INTRON
SBS Chr10 13955977 G-A Hetero INTERGENIC
SBS Chr10 17687492 G-A Homo INTERGENIC
SBS Chr10 17701033 C-A Hetero INTERGENIC
SBS Chr10 20085804 C-T Homo INTERGENIC
SBS Chr11 17088349 G-A Homo INTERGENIC
SBS Chr11 19513676 C-G Hetero INTERGENIC
SBS Chr11 19881391 C-T Hetero INTERGENIC
SBS Chr11 20170841 C-T Homo INTERGENIC
SBS Chr12 2597674 A-G Hetero UTR_3_PRIME
SBS Chr12 2774812 C-T Hetero INTERGENIC
SBS Chr12 3449419 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g048800
SBS Chr12 9367509 G-A Hetero INTERGENIC
SBS Chr12 11782847 T-A Hetero INTRON
SBS Chr12 23136863 T-A Homo INTERGENIC
SBS Chr1 11251314 G-A Hetero INTERGENIC
SBS Chr1 11673637 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g140800
SBS Chr1 39365212 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g424600
SBS Chr2 20411085 G-T Hetero INTERGENIC
SBS Chr2 36235584 A-G Homo UTR_3_PRIME
SBS Chr3 9821187 C-T Homo INTERGENIC
SBS Chr3 25684533 A-G Hetero INTERGENIC
SBS Chr3 26535100 G-T Homo INTERGENIC
SBS Chr3 27155235 A-C Homo INTRON
SBS Chr4 3894020 G-A Hetero INTERGENIC
SBS Chr4 9121563 G-A Hetero INTERGENIC
SBS Chr4 14254686 A-G Hetero INTERGENIC
SBS Chr5 682344 G-C Hetero INTERGENIC
SBS Chr5 25507701 G-A Homo NON_SYNONYMOUS_CODING OsKitaake05g223200
SBS Chr6 1890432 T-C Hetero INTERGENIC
SBS Chr6 16913919 C-T Hetero INTERGENIC
SBS Chr6 19807423 C-A Hetero INTERGENIC
SBS Chr6 21839149 C-T Hetero INTERGENIC
SBS Chr7 555720 G-A Hetero INTERGENIC
SBS Chr7 21646060 G-A Hetero UTR_3_PRIME
SBS Chr8 4505081 T-C Hetero INTERGENIC
SBS Chr8 4505082 G-A Hetero INTERGENIC
SBS Chr8 21737460 G-A Homo INTRON
SBS Chr8 21737462 G-A Homo INTRON
SBS Chr8 21799771 T-A Homo INTERGENIC
SBS Chr9 21051793 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake09g181000
SBS Chr9 21051794 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 273638 T-A Homo INTERGENIC
SBS Chr10 14839621 G-A Hetero INTERGENIC
SBS Chr11 4454045 G-A Hetero INTRON
SBS Chr11 9279742 C-A Hetero INTERGENIC
SBS Chr11 13770095 C-T Hetero INTERGENIC
SBS Chr11 13770096 C-T Hetero INTERGENIC
SBS Chr11 14657174 T-C Hetero INTERGENIC
SBS Chr11 20933871 A-G Hetero INTERGENIC
SBS Chr11 22270454 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g176300
SBS Chr12 11228819 C-T Homo INTERGENIC
SBS Chr12 25389246 G-C Hetero UTR_3_PRIME

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1768502 1768503 1
Deletion Chr11 2383115 2383120 5
Deletion Chr6 3145754 3145768 14
Deletion Chr7 3670316 3670317 1
Deletion Chr12 4148434 4148440 6
Deletion Chr11 5693364 5693365 1
Deletion Chr2 7598171 7598196 25 OsKitaake02g100000
Deletion Chr7 9540560 9540576 16
Deletion Chr12 11172973 11172990 17
Deletion Chr4 11230016 11230017 1
Deletion Chr9 12280333 12280335 2
Deletion Chr4 12917147 12917149 2
Deletion Chr9 14373793 14373794 1
Deletion Chr10 15367184 15367186 2
Deletion Chr4 15416406 15416410 4
Deletion Chr1 16835322 16835323 1
Deletion Chr1 18305825 18305835 10
Deletion Chr12 18731001 18838000 106999 3
Deletion Chr7 18988520 18988522 2
Deletion Chr3 19652846 19652847 1
Deletion Chr2 20079000 20079003 3
Deletion Chr6 21851534 21851536 2
Deletion Chr7 22588681 22588749 68
Deletion Chr6 23641259 23641261 2
Deletion Chr11 25105189 25105190 1
Deletion Chr1 26888248 26888249 1
Deletion Chr4 31776284 31776287 3
Deletion Chr1 32319108 32319111 3
Deletion Chr2 35685669 35685676 7 OsKitaake02g375200
Deletion Chr3 37070415 37070419 4
Deletion Chr1 37466102 37466104 2

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 11466902 11466905 2
Insertion Chr8 18669453 18669456 2
Insertion Chr12 21504605 21504608 2
Insertion Chr5 24026447 24026451 3
Insertion Chr5 29401543 29401546 2
Insertion Chr8 23269457 23269462 4
Insertion Chr5 15429614 15429616 1
Insertion Chr12 23333501 23333506 4
Insertion Chr5 12594783 12594785 1

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 3459650 4243713 OsKitaake05g041700
Inversion Chr5 3459657 4243727 OsKitaake05g041700
Inversion Chr3 18436198 18483439 OsKitaake03g223900
Inversion Chr8 22422974 22947331 OsKitaake08g171000
Inversion Chr8 22422988 22947332 OsKitaake08g171000
Inversion Chr1 26658559 27214497
Inversion Chr1 26658562 27214499

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 4961907 Chr2 32213636 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5827172	T-C	Hetero	INTERGENIC
SBS	Chr2	14680157	G-C	Hetero	UTR_5_PRIME
SBS	Chr2	22693732	C-G	Hetero	INTERGENIC
SBS	Chr2	25119707	G-A	Hetero	INTERGENIC
SBS	Chr3	768482	T-A	Homo	INTERGENIC
SBS	Chr3	2869340	A-C	Homo	INTERGENIC
SBS	Chr3	4785166	A-C	Homo	INTERGENIC
SBS	Chr3	7243754	T-C	Hetero	UTR_5_PRIME
SBS	Chr3	7710330	C-A	Hetero	INTERGENIC
SBS	Chr3	15361692	G-C	Homo	INTERGENIC
SBS	Chr3	21705905	T-A	Hetero	INTERGENIC
SBS	Chr3	23504522	G-A	Hetero	INTERGENIC
SBS	Chr3	23791540	G-A	Homo	INTERGENIC
SBS	Chr3	37184241	A-C	Hetero	INTERGENIC
SBS	Chr4	5073239	A-G	Homo	INTERGENIC
SBS	Chr4	10105671	G-A	Homo	INTERGENIC
SBS	Chr4	11236293	C-T	Homo	INTERGENIC
SBS	Chr4	11258418	G-A	Hetero	INTERGENIC
SBS	Chr4	12828028	C-T	Hetero	INTERGENIC
SBS	Chr4	16118090	G-A	Homo	INTERGENIC
SBS	Chr4	35499401	G-T	Homo	START_GAINED
SBS	Chr5	2437995	C-T	Hetero	INTRON
SBS	Chr5	20033310	A-G	Hetero	INTERGENIC
SBS	Chr5	24806849	T-A	Hetero	INTERGENIC
SBS	Chr5	24997862	C-A	Hetero	INTERGENIC
SBS	Chr6	16956451	G-A	Hetero	INTERGENIC
SBS	Chr6	21957804	G-A	Hetero	INTERGENIC
SBS	Chr6	31031374	C-T	Homo	INTERGENIC
SBS	Chr7	11717287	C-T	Hetero	INTERGENIC
SBS	Chr7	11717288	C-T	Hetero	INTERGENIC
SBS	Chr7	17685861	T-C	Hetero	UTR_3_PRIME
SBS	Chr7	23948977	T-A	Homo	INTRON
SBS	Chr8	4361993	G-A	Homo	INTERGENIC
SBS	Chr8	12570123	C-T	Homo	INTERGENIC
SBS	Chr8	14331264	A-C	Hetero	INTERGENIC
SBS	Chr8	26294080	C-T	Hetero	INTERGENIC
SBS	Chr9	13435251	T-G	Hetero	INTERGENIC
SBS	Chr10	9427997	T-C	Hetero	INTRON
SBS	Chr10	13955977	G-A	Hetero	INTERGENIC
SBS	Chr10	17687492	G-A	Homo	INTERGENIC
SBS	Chr10	17701033	C-A	Hetero	INTERGENIC
SBS	Chr10	20085804	C-T	Homo	INTERGENIC
SBS	Chr11	17088349	G-A	Homo	INTERGENIC
SBS	Chr11	19513676	C-G	Hetero	INTERGENIC
SBS	Chr11	19881391	C-T	Hetero	INTERGENIC
SBS	Chr11	20170841	C-T	Homo	INTERGENIC
SBS	Chr12	2597674	A-G	Hetero	UTR_3_PRIME
SBS	Chr12	2774812	C-T	Hetero	INTERGENIC
SBS	Chr12	3449419	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g048800
SBS	Chr12	9367509	G-A	Hetero	INTERGENIC
SBS	Chr12	11782847	T-A	Hetero	INTRON
SBS	Chr12	23136863	T-A	Homo	INTERGENIC
SBS	Chr1	11251314	G-A	Hetero	INTERGENIC
SBS	Chr1	11673637	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g140800
SBS	Chr1	39365212	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g424600
SBS	Chr2	20411085	G-T	Hetero	INTERGENIC
SBS	Chr2	36235584	A-G	Homo	UTR_3_PRIME
SBS	Chr3	9821187	C-T	Homo	INTERGENIC
SBS	Chr3	25684533	A-G	Hetero	INTERGENIC
SBS	Chr3	26535100	G-T	Homo	INTERGENIC
SBS	Chr3	27155235	A-C	Homo	INTRON
SBS	Chr4	3894020	G-A	Hetero	INTERGENIC
SBS	Chr4	9121563	G-A	Hetero	INTERGENIC
SBS	Chr4	14254686	A-G	Hetero	INTERGENIC
SBS	Chr5	682344	G-C	Hetero	INTERGENIC
SBS	Chr5	25507701	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g223200
SBS	Chr6	1890432	T-C	Hetero	INTERGENIC
SBS	Chr6	16913919	C-T	Hetero	INTERGENIC
SBS	Chr6	19807423	C-A	Hetero	INTERGENIC
SBS	Chr6	21839149	C-T	Hetero	INTERGENIC
SBS	Chr7	555720	G-A	Hetero	INTERGENIC
SBS	Chr7	21646060	G-A	Hetero	UTR_3_PRIME
SBS	Chr8	4505081	T-C	Hetero	INTERGENIC
SBS	Chr8	4505082	G-A	Hetero	INTERGENIC
SBS	Chr8	21737460	G-A	Homo	INTRON
SBS	Chr8	21737462	G-A	Homo	INTRON
SBS	Chr8	21799771	T-A	Homo	INTERGENIC
SBS	Chr9	21051793	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g181000
SBS	Chr9	21051794	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	273638	T-A	Homo	INTERGENIC
SBS	Chr10	14839621	G-A	Hetero	INTERGENIC
SBS	Chr11	4454045	G-A	Hetero	INTRON
SBS	Chr11	9279742	C-A	Hetero	INTERGENIC
SBS	Chr11	13770095	C-T	Hetero	INTERGENIC
SBS	Chr11	13770096	C-T	Hetero	INTERGENIC
SBS	Chr11	14657174	T-C	Hetero	INTERGENIC
SBS	Chr11	20933871	A-G	Hetero	INTERGENIC
SBS	Chr11	22270454	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g176300
SBS	Chr12	11228819	C-T	Homo	INTERGENIC
SBS	Chr12	25389246	G-C	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1768502	1768503	1
Deletion	Chr11	2383115	2383120	5
Deletion	Chr6	3145754	3145768	14
Deletion	Chr7	3670316	3670317	1
Deletion	Chr12	4148434	4148440	6
Deletion	Chr11	5693364	5693365	1
Deletion	Chr2	7598171	7598196	25	OsKitaake02g100000
Deletion	Chr7	9540560	9540576	16
Deletion	Chr12	11172973	11172990	17
Deletion	Chr4	11230016	11230017	1
Deletion	Chr9	12280333	12280335	2
Deletion	Chr4	12917147	12917149	2
Deletion	Chr9	14373793	14373794	1
Deletion	Chr10	15367184	15367186	2
Deletion	Chr4	15416406	15416410	4
Deletion	Chr1	16835322	16835323	1
Deletion	Chr1	18305825	18305835	10
Deletion	Chr12	18731001	18838000	106999	3
Deletion	Chr7	18988520	18988522	2
Deletion	Chr3	19652846	19652847	1
Deletion	Chr2	20079000	20079003	3
Deletion	Chr6	21851534	21851536	2
Deletion	Chr7	22588681	22588749	68
Deletion	Chr6	23641259	23641261	2
Deletion	Chr11	25105189	25105190	1
Deletion	Chr1	26888248	26888249	1
Deletion	Chr4	31776284	31776287	3
Deletion	Chr1	32319108	32319111	3
Deletion	Chr2	35685669	35685676	7	OsKitaake02g375200
Deletion	Chr3	37070415	37070419	4
Deletion	Chr1	37466102	37466104	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	3459650	4243713	OsKitaake05g041700
Inversion	Chr5	3459657	4243727	OsKitaake05g041700
Inversion	Chr3	18436198	18483439	OsKitaake03g223900
Inversion	Chr8	22422974	22947331	OsKitaake08g171000
Inversion	Chr8	22422988	22947332	OsKitaake08g171000
Inversion	Chr1	26658559	27214497
Inversion	Chr1	26658562	27214499

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes