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Mutant Information

Mutant Name	FN2753-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2753-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 124

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14134489 G-A Hetero INTERGENIC
SBS Chr1 16144674 G-A Hetero INTERGENIC
SBS Chr1 18270425 G-A Hetero INTRON
SBS Chr1 18606000 A-G Hetero INTERGENIC
SBS Chr1 20190796 C-T Hetero INTERGENIC
SBS Chr1 22667330 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g216800
SBS Chr2 2174111 G-A Hetero INTERGENIC
SBS Chr2 14096537 G-C Hetero INTRON
SBS Chr2 22416748 G-A Homo SYNONYMOUS_CODING
SBS Chr2 22605447 C-T Hetero INTRON
SBS Chr2 28792247 A-T Hetero UTR_3_PRIME
SBS Chr3 7860069 A-T Hetero UTR_5_PRIME
SBS Chr3 11142594 G-A Homo INTERGENIC
SBS Chr3 20291040 C-T Homo INTERGENIC
SBS Chr3 26261283 C-A Hetero INTERGENIC
SBS Chr3 29980766 C-A Hetero UTR_3_PRIME
SBS Chr3 31206175 G-A Hetero INTERGENIC
SBS Chr3 32561009 C-T Hetero INTERGENIC
SBS Chr3 35715553 G-C Hetero INTERGENIC
SBS Chr4 3127405 G-A Hetero INTERGENIC
SBS Chr4 10143300 C-G Homo INTERGENIC
SBS Chr4 14233228 G-A Homo INTERGENIC
SBS Chr4 15816829 A-C Homo INTERGENIC
SBS Chr4 19124625 G-A Hetero INTERGENIC
SBS Chr4 19889219 C-A Homo INTERGENIC
SBS Chr4 19889220 T-C Homo INTERGENIC
SBS Chr4 20233489 T-C Homo INTERGENIC
SBS Chr4 22303761 C-A Homo UTR_3_PRIME
SBS Chr5 7066684 T-A Homo INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 14009668 A-G Homo INTERGENIC
SBS Chr5 23094374 C-T Hetero INTERGENIC
SBS Chr5 26565464 T-C Homo INTERGENIC
SBS Chr6 3395409 G-A Homo INTERGENIC
SBS Chr6 13548450 T-A Homo INTERGENIC
SBS Chr6 26219087 A-G Hetero INTERGENIC
SBS Chr6 28820853 G-A Hetero INTERGENIC
SBS Chr6 29220318 T-C Hetero INTRON
SBS Chr7 8637921 G-A Hetero INTERGENIC
SBS Chr7 14639205 C-T Homo INTERGENIC
SBS Chr7 16975763 G-A Hetero INTERGENIC
SBS Chr7 29408065 C-A Hetero INTERGENIC
SBS Chr8 449429 G-A Hetero INTRON
SBS Chr8 3416193 A-G Hetero INTRON
SBS Chr8 7010745 C-T Homo INTERGENIC
SBS Chr8 8498523 C-T Hetero INTERGENIC
SBS Chr8 9362335 A-G Hetero INTERGENIC
SBS Chr8 13857986 C-T Hetero INTERGENIC
SBS Chr9 19124771 A-G Hetero INTERGENIC
SBS Chr9 19162819 C-T Hetero UTR_3_PRIME
SBS Chr10 2751767 A-G Hetero INTERGENIC
SBS Chr10 6903716 T-A Hetero INTERGENIC
SBS Chr10 6941527 G-A Hetero INTERGENIC
SBS Chr11 3091641 G-T Homo INTERGENIC
SBS Chr11 5228814 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g065800
SBS Chr11 19209888 T-A Hetero INTERGENIC
SBS Chr11 22533781 G-T Hetero INTRON
SBS Chr11 26121705 C-T Hetero INTERGENIC
SBS Chr12 7912758 C-G Hetero INTERGENIC
SBS Chr12 9460231 G-A Hetero INTERGENIC
SBS Chr12 11630426 G-T Hetero INTERGENIC
SBS Chr12 13389450 G-A Hetero INTERGENIC
SBS Chr12 20432659 T-A Homo INTERGENIC
SBS Chr12 26250618 G-T Hetero INTERGENIC
SBS Chr1 139762 C-G Hetero INTERGENIC
SBS Chr1 3856223 G-A Hetero INTERGENIC
SBS Chr1 13210090 C-T Hetero INTERGENIC
SBS Chr1 16958516 G-T Hetero INTERGENIC
SBS Chr1 18078606 G-C Hetero INTERGENIC
SBS Chr1 38779981 A-T Hetero UTR_3_PRIME
SBS Chr2 13900937 G-T Hetero INTERGENIC
SBS Chr2 18556379 C-A Hetero INTERGENIC
SBS Chr2 18556666 G-T Hetero INTERGENIC
SBS Chr2 18829446 T-C Hetero INTERGENIC
SBS Chr2 21493356 C-T Hetero SYNONYMOUS_CODING
SBS Chr2 30400890 C-T Hetero INTERGENIC
SBS Chr2 34276725 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g356200
SBS Chr2 34308206 C-G Hetero START_GAINED
SBS Chr2 34308210 G-T Hetero UTR_5_PRIME
SBS Chr2 34904690 A-T Hetero INTERGENIC
SBS Chr3 17627339 C-G Homo INTERGENIC
SBS Chr3 20970183 G-T Hetero INTERGENIC
SBS Chr3 29896778 G-T Hetero INTERGENIC
SBS Chr3 30612723 G-A Hetero INTERGENIC
SBS Chr3 33456060 G-A Hetero INTRON
SBS Chr4 4436704 G-A Homo INTERGENIC
SBS Chr4 11064478 C-T Homo INTERGENIC
SBS Chr5 9445651 G-A Hetero INTERGENIC
SBS Chr5 9445652 A-T Hetero INTERGENIC
SBS Chr5 11791864 T-C Hetero INTERGENIC
SBS Chr5 23651387 T-A Homo INTERGENIC
SBS Chr5 25727641 C-T Hetero INTERGENIC
SBS Chr5 27833625 G-A Hetero INTERGENIC
SBS Chr5 28931953 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g272700
SBS Chr6 12214365 T-A Homo INTERGENIC
SBS Chr6 27692499 C-T Hetero INTERGENIC
SBS Chr7 469699 C-T Hetero INTERGENIC
SBS Chr7 1212913 G-T Homo INTERGENIC
SBS Chr7 27461504 T-C Hetero INTRON
SBS Chr8 1164399 T-C Hetero INTERGENIC
SBS Chr8 2180058 A-G Hetero INTERGENIC
SBS Chr8 12702574 G-A Hetero INTERGENIC
SBS Chr8 20212406 G-A Hetero INTERGENIC
SBS Chr8 21289717 G-A Hetero INTERGENIC
SBS Chr9 5897761 G-T Hetero INTRON
SBS Chr9 7472773 G-C Hetero INTERGENIC
SBS Chr9 10781637 T-C Hetero INTERGENIC
SBS Chr9 11700706 G-A Hetero INTERGENIC
SBS Chr9 11960349 G-A Hetero INTERGENIC
SBS Chr9 20316239 T-A Hetero INTERGENIC
SBS Chr9 20623210 C-A Hetero INTERGENIC
SBS Chr10 6872450 C-T Hetero INTERGENIC
SBS Chr11 5892226 C-T Hetero INTERGENIC
SBS Chr11 8915566 A-C Hetero INTERGENIC
SBS Chr11 13615705 C-A Homo INTRON
SBS Chr11 15249446 C-T Hetero INTERGENIC
SBS Chr12 5395266 C-T Hetero INTERGENIC
SBS Chr12 10258831 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g096300
SBS Chr12 10546566 G-T Hetero INTERGENIC
SBS Chr12 11030581 C-T Hetero INTERGENIC
SBS Chr12 12725117 C-T Hetero INTERGENIC
SBS Chr12 18886133 C-G Hetero INTERGENIC
SBS Chr12 18888142 A-T Hetero INTERGENIC
SBS Chr12 20764345 G-A Hetero INTERGENIC

Deletions: 27

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1585945 1585951 6 OsKitaake12g024201
Deletion Chr7 1906316 1906319 3
Deletion Chr4 3964937 3964938 1
Deletion Chr4 6055854 6055880 26
Deletion Chr5 6508369 6508371 2
Deletion Chr6 6805674 6805676 2
Deletion Chr6 7380965 7380970 5
Deletion Chr4 7710398 7710402 4
Deletion Chr12 8327979 8327981 2
Deletion Chr4 10098001 10104000 5999
Deletion Chr6 11700157 11700168 11
Deletion Chr7 12523420 12523422 2
Deletion Chr4 13981722 13981726 4
Deletion Chr8 16962001 17029000 66999 6
Deletion Chr12 20397670 20397671 1
Deletion Chr6 21271616 21271617 1 OsKitaake06g188500
Deletion Chr3 21949626 21949641 15
Deletion Chr2 22364350 22364353 3
Deletion Chr12 23134024 23134031 7
Deletion Chr4 23483249 23483251 2
Deletion Chr8 25565097 25565099 2
Deletion Chr12 26824908 26824913 5
Deletion Chr1 27943170 27943173 3
Deletion Chr4 29390513 29390541 28
Deletion Chr4 31621455 31621467 12
Deletion Chr1 40876401 40876404 3
Deletion Chr1 43711607 43711613 6

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 7942479 7942482 2
Insertion Chr11 25931753 25931755 1
Insertion Chr12 5762436 5762439 2
Insertion Chr1 4037151 4037154 2
Insertion Chr3 36614366 36614371 4
Insertion Chr7 3512595 3512599 3
Insertion Chr7 14314102 14314105 2
Insertion Chr8 16765157 16765160 2
Insertion Chr8 27257524 27257527 2
Insertion Chr9 13042713 13042716 2
Insertion Chr11 24188791 24188794 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 1434731 1463569 2
Inversion Chr12 1434735 1463574 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13169493 Chr5 26844624 OsKitaake05g239900
Translocation Chr8 13169500 Chr1 20419582
Translocation Chr8 19986693 Chr7 20855446
Translocation Chr8 19987212 Chr7 20855449

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14134489	G-A	Hetero	INTERGENIC
SBS	Chr1	16144674	G-A	Hetero	INTERGENIC
SBS	Chr1	18270425	G-A	Hetero	INTRON
SBS	Chr1	18606000	A-G	Hetero	INTERGENIC
SBS	Chr1	20190796	C-T	Hetero	INTERGENIC
SBS	Chr1	22667330	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g216800
SBS	Chr2	2174111	G-A	Hetero	INTERGENIC
SBS	Chr2	14096537	G-C	Hetero	INTRON
SBS	Chr2	22416748	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	22605447	C-T	Hetero	INTRON
SBS	Chr2	28792247	A-T	Hetero	UTR_3_PRIME
SBS	Chr3	7860069	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	11142594	G-A	Homo	INTERGENIC
SBS	Chr3	20291040	C-T	Homo	INTERGENIC
SBS	Chr3	26261283	C-A	Hetero	INTERGENIC
SBS	Chr3	29980766	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	31206175	G-A	Hetero	INTERGENIC
SBS	Chr3	32561009	C-T	Hetero	INTERGENIC
SBS	Chr3	35715553	G-C	Hetero	INTERGENIC
SBS	Chr4	3127405	G-A	Hetero	INTERGENIC
SBS	Chr4	10143300	C-G	Homo	INTERGENIC
SBS	Chr4	14233228	G-A	Homo	INTERGENIC
SBS	Chr4	15816829	A-C	Homo	INTERGENIC
SBS	Chr4	19124625	G-A	Hetero	INTERGENIC
SBS	Chr4	19889219	C-A	Homo	INTERGENIC
SBS	Chr4	19889220	T-C	Homo	INTERGENIC
SBS	Chr4	20233489	T-C	Homo	INTERGENIC
SBS	Chr4	22303761	C-A	Homo	UTR_3_PRIME
SBS	Chr5	7066684	T-A	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	14009668	A-G	Homo	INTERGENIC
SBS	Chr5	23094374	C-T	Hetero	INTERGENIC
SBS	Chr5	26565464	T-C	Homo	INTERGENIC
SBS	Chr6	3395409	G-A	Homo	INTERGENIC
SBS	Chr6	13548450	T-A	Homo	INTERGENIC
SBS	Chr6	26219087	A-G	Hetero	INTERGENIC
SBS	Chr6	28820853	G-A	Hetero	INTERGENIC
SBS	Chr6	29220318	T-C	Hetero	INTRON
SBS	Chr7	8637921	G-A	Hetero	INTERGENIC
SBS	Chr7	14639205	C-T	Homo	INTERGENIC
SBS	Chr7	16975763	G-A	Hetero	INTERGENIC
SBS	Chr7	29408065	C-A	Hetero	INTERGENIC
SBS	Chr8	449429	G-A	Hetero	INTRON
SBS	Chr8	3416193	A-G	Hetero	INTRON
SBS	Chr8	7010745	C-T	Homo	INTERGENIC
SBS	Chr8	8498523	C-T	Hetero	INTERGENIC
SBS	Chr8	9362335	A-G	Hetero	INTERGENIC
SBS	Chr8	13857986	C-T	Hetero	INTERGENIC
SBS	Chr9	19124771	A-G	Hetero	INTERGENIC
SBS	Chr9	19162819	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	2751767	A-G	Hetero	INTERGENIC
SBS	Chr10	6903716	T-A	Hetero	INTERGENIC
SBS	Chr10	6941527	G-A	Hetero	INTERGENIC
SBS	Chr11	3091641	G-T	Homo	INTERGENIC
SBS	Chr11	5228814	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g065800
SBS	Chr11	19209888	T-A	Hetero	INTERGENIC
SBS	Chr11	22533781	G-T	Hetero	INTRON
SBS	Chr11	26121705	C-T	Hetero	INTERGENIC
SBS	Chr12	7912758	C-G	Hetero	INTERGENIC
SBS	Chr12	9460231	G-A	Hetero	INTERGENIC
SBS	Chr12	11630426	G-T	Hetero	INTERGENIC
SBS	Chr12	13389450	G-A	Hetero	INTERGENIC
SBS	Chr12	20432659	T-A	Homo	INTERGENIC
SBS	Chr12	26250618	G-T	Hetero	INTERGENIC
SBS	Chr1	139762	C-G	Hetero	INTERGENIC
SBS	Chr1	3856223	G-A	Hetero	INTERGENIC
SBS	Chr1	13210090	C-T	Hetero	INTERGENIC
SBS	Chr1	16958516	G-T	Hetero	INTERGENIC
SBS	Chr1	18078606	G-C	Hetero	INTERGENIC
SBS	Chr1	38779981	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	13900937	G-T	Hetero	INTERGENIC
SBS	Chr2	18556379	C-A	Hetero	INTERGENIC
SBS	Chr2	18556666	G-T	Hetero	INTERGENIC
SBS	Chr2	18829446	T-C	Hetero	INTERGENIC
SBS	Chr2	21493356	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	30400890	C-T	Hetero	INTERGENIC
SBS	Chr2	34276725	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g356200
SBS	Chr2	34308206	C-G	Hetero	START_GAINED
SBS	Chr2	34308210	G-T	Hetero	UTR_5_PRIME
SBS	Chr2	34904690	A-T	Hetero	INTERGENIC
SBS	Chr3	17627339	C-G	Homo	INTERGENIC
SBS	Chr3	20970183	G-T	Hetero	INTERGENIC
SBS	Chr3	29896778	G-T	Hetero	INTERGENIC
SBS	Chr3	30612723	G-A	Hetero	INTERGENIC
SBS	Chr3	33456060	G-A	Hetero	INTRON
SBS	Chr4	4436704	G-A	Homo	INTERGENIC
SBS	Chr4	11064478	C-T	Homo	INTERGENIC
SBS	Chr5	9445651	G-A	Hetero	INTERGENIC
SBS	Chr5	9445652	A-T	Hetero	INTERGENIC
SBS	Chr5	11791864	T-C	Hetero	INTERGENIC
SBS	Chr5	23651387	T-A	Homo	INTERGENIC
SBS	Chr5	25727641	C-T	Hetero	INTERGENIC
SBS	Chr5	27833625	G-A	Hetero	INTERGENIC
SBS	Chr5	28931953	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g272700
SBS	Chr6	12214365	T-A	Homo	INTERGENIC
SBS	Chr6	27692499	C-T	Hetero	INTERGENIC
SBS	Chr7	469699	C-T	Hetero	INTERGENIC
SBS	Chr7	1212913	G-T	Homo	INTERGENIC
SBS	Chr7	27461504	T-C	Hetero	INTRON
SBS	Chr8	1164399	T-C	Hetero	INTERGENIC
SBS	Chr8	2180058	A-G	Hetero	INTERGENIC
SBS	Chr8	12702574	G-A	Hetero	INTERGENIC
SBS	Chr8	20212406	G-A	Hetero	INTERGENIC
SBS	Chr8	21289717	G-A	Hetero	INTERGENIC
SBS	Chr9	5897761	G-T	Hetero	INTRON
SBS	Chr9	7472773	G-C	Hetero	INTERGENIC
SBS	Chr9	10781637	T-C	Hetero	INTERGENIC
SBS	Chr9	11700706	G-A	Hetero	INTERGENIC
SBS	Chr9	11960349	G-A	Hetero	INTERGENIC
SBS	Chr9	20316239	T-A	Hetero	INTERGENIC
SBS	Chr9	20623210	C-A	Hetero	INTERGENIC
SBS	Chr10	6872450	C-T	Hetero	INTERGENIC
SBS	Chr11	5892226	C-T	Hetero	INTERGENIC
SBS	Chr11	8915566	A-C	Hetero	INTERGENIC
SBS	Chr11	13615705	C-A	Homo	INTRON
SBS	Chr11	15249446	C-T	Hetero	INTERGENIC
SBS	Chr12	5395266	C-T	Hetero	INTERGENIC
SBS	Chr12	10258831	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g096300
SBS	Chr12	10546566	G-T	Hetero	INTERGENIC
SBS	Chr12	11030581	C-T	Hetero	INTERGENIC
SBS	Chr12	12725117	C-T	Hetero	INTERGENIC
SBS	Chr12	18886133	C-G	Hetero	INTERGENIC
SBS	Chr12	18888142	A-T	Hetero	INTERGENIC
SBS	Chr12	20764345	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1585945	1585951	6	OsKitaake12g024201
Deletion	Chr7	1906316	1906319	3
Deletion	Chr4	3964937	3964938	1
Deletion	Chr4	6055854	6055880	26
Deletion	Chr5	6508369	6508371	2
Deletion	Chr6	6805674	6805676	2
Deletion	Chr6	7380965	7380970	5
Deletion	Chr4	7710398	7710402	4
Deletion	Chr12	8327979	8327981	2
Deletion	Chr4	10098001	10104000	5999
Deletion	Chr6	11700157	11700168	11
Deletion	Chr7	12523420	12523422	2
Deletion	Chr4	13981722	13981726	4
Deletion	Chr8	16962001	17029000	66999	6
Deletion	Chr12	20397670	20397671	1
Deletion	Chr6	21271616	21271617	1	OsKitaake06g188500
Deletion	Chr3	21949626	21949641	15
Deletion	Chr2	22364350	22364353	3
Deletion	Chr12	23134024	23134031	7
Deletion	Chr4	23483249	23483251	2
Deletion	Chr8	25565097	25565099	2
Deletion	Chr12	26824908	26824913	5
Deletion	Chr1	27943170	27943173	3
Deletion	Chr4	29390513	29390541	28
Deletion	Chr4	31621455	31621467	12
Deletion	Chr1	40876401	40876404	3
Deletion	Chr1	43711607	43711613	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	1434731	1463569	2
Inversion	Chr12	1434735	1463574	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes