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Mutant Information

Mutant Name	FN2753-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2753-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 55

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20190796 C-T Hetero INTERGENIC
SBS Chr1 33237772 A-G Homo INTERGENIC
SBS Chr1 38394719 G-T Hetero INTERGENIC
SBS Chr2 14096537 G-C Hetero INTRON
SBS Chr2 22416748 G-A Homo SYNONYMOUS_CODING
SBS Chr2 22605447 C-T Hetero INTRON
SBS Chr2 28792247 A-T Hetero UTR_3_PRIME
SBS Chr2 29416728 C-G Hetero INTERGENIC
SBS Chr2 35306751 A-G Hetero UTR_5_PRIME
SBS Chr3 11142594 G-A Homo INTERGENIC
SBS Chr3 20291040 C-T Homo INTERGENIC
SBS Chr3 26261283 C-A Hetero INTERGENIC
SBS Chr3 31206175 G-A Hetero INTERGENIC
SBS Chr3 32561009 C-T Hetero INTERGENIC
SBS Chr3 35715553 G-C Hetero INTERGENIC
SBS Chr4 9842522 C-T Hetero INTERGENIC
SBS Chr4 10143300 C-G Homo INTERGENIC
SBS Chr4 11080322 C-T Hetero INTERGENIC
SBS Chr4 14233228 G-A Homo INTERGENIC
SBS Chr4 15816829 A-C Homo INTERGENIC
SBS Chr4 19889219 C-A Homo INTERGENIC
SBS Chr4 19889220 T-C Homo INTERGENIC
SBS Chr4 20233489 T-C Homo INTERGENIC
SBS Chr4 22303761 C-A Homo UTR_3_PRIME
SBS Chr5 7066684 T-A Homo INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 13513325 C-T Hetero INTERGENIC
SBS Chr5 14009668 A-G Homo INTERGENIC
SBS Chr5 15887563 G-T Hetero INTERGENIC
SBS Chr5 17620375 G-T Hetero INTERGENIC
SBS Chr5 26565464 T-C Homo INTERGENIC
SBS Chr6 3395409 G-A Homo INTERGENIC
SBS Chr6 13548450 T-A Homo INTERGENIC
SBS Chr6 28820853 G-A Hetero INTERGENIC
SBS Chr6 29220318 T-C Hetero INTRON
SBS Chr6 29408244 G-A Hetero INTRON
SBS Chr7 14639205 C-T Homo INTERGENIC
SBS Chr7 16975763 G-A Hetero INTERGENIC
SBS Chr8 2919009 A-T Hetero INTRON
SBS Chr8 3416193 A-G Hetero INTRON
SBS Chr8 7010745 C-T Homo INTERGENIC
SBS Chr8 11594352 G-A Hetero INTERGENIC
SBS Chr8 13857986 C-T Hetero INTERGENIC
SBS Chr9 8632661 G-A Hetero INTERGENIC
SBS Chr9 15929139 A-G Hetero INTRON
SBS Chr9 19174371 A-T Hetero INTERGENIC
SBS Chr10 5540106 T-A Homo INTERGENIC
SBS Chr10 6903716 T-A Hetero INTERGENIC
SBS Chr10 7733991 C-T Hetero INTERGENIC
SBS Chr11 3091641 G-T Homo INTERGENIC
SBS Chr11 14895786 A-G Hetero INTERGENIC
SBS Chr12 9460231 G-A Hetero INTERGENIC
SBS Chr12 10395399 G-A Hetero INTERGENIC
SBS Chr12 13389450 G-A Hetero INTERGENIC
SBS Chr12 20432659 T-A Homo INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1133516 1133517 1
Deletion Chr12 1585945 1585951 6 OsKitaake12g024201
Deletion Chr8 4831893 4831895 2
Deletion Chr6 7380965 7380970 5
Deletion Chr11 8121778 8121782 4
Deletion Chr4 10098001 10104000 5999
Deletion Chr6 11700157 11700168 11
Deletion Chr5 13847174 13847189 15
Deletion Chr8 13888723 13888724 1
Deletion Chr12 20397670 20397671 1
Deletion Chr12 23134024 23134031 7
Deletion Chr4 23483249 23483251 2
Deletion Chr12 26824908 26824913 5
Deletion Chr3 33102865 33102866 1
Deletion Chr1 40876401 40876404 3
Deletion Chr1 43711607 43711613 6

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 36082270 36082273 2
Insertion Chr5 10147547 10147551 3
Insertion Chr7 7942479 7942482 2
Insertion Chr9 10196121 10196124 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 13169493 Chr5 26844624 OsKitaake05g239900
Translocation Chr8 13169500 Chr1 20419582

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20190796	C-T	Hetero	INTERGENIC
SBS	Chr1	33237772	A-G	Homo	INTERGENIC
SBS	Chr1	38394719	G-T	Hetero	INTERGENIC
SBS	Chr2	14096537	G-C	Hetero	INTRON
SBS	Chr2	22416748	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	22605447	C-T	Hetero	INTRON
SBS	Chr2	28792247	A-T	Hetero	UTR_3_PRIME
SBS	Chr2	29416728	C-G	Hetero	INTERGENIC
SBS	Chr2	35306751	A-G	Hetero	UTR_5_PRIME
SBS	Chr3	11142594	G-A	Homo	INTERGENIC
SBS	Chr3	20291040	C-T	Homo	INTERGENIC
SBS	Chr3	26261283	C-A	Hetero	INTERGENIC
SBS	Chr3	31206175	G-A	Hetero	INTERGENIC
SBS	Chr3	32561009	C-T	Hetero	INTERGENIC
SBS	Chr3	35715553	G-C	Hetero	INTERGENIC
SBS	Chr4	9842522	C-T	Hetero	INTERGENIC
SBS	Chr4	10143300	C-G	Homo	INTERGENIC
SBS	Chr4	11080322	C-T	Hetero	INTERGENIC
SBS	Chr4	14233228	G-A	Homo	INTERGENIC
SBS	Chr4	15816829	A-C	Homo	INTERGENIC
SBS	Chr4	19889219	C-A	Homo	INTERGENIC
SBS	Chr4	19889220	T-C	Homo	INTERGENIC
SBS	Chr4	20233489	T-C	Homo	INTERGENIC
SBS	Chr4	22303761	C-A	Homo	UTR_3_PRIME
SBS	Chr5	7066684	T-A	Homo	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	13513325	C-T	Hetero	INTERGENIC
SBS	Chr5	14009668	A-G	Homo	INTERGENIC
SBS	Chr5	15887563	G-T	Hetero	INTERGENIC
SBS	Chr5	17620375	G-T	Hetero	INTERGENIC
SBS	Chr5	26565464	T-C	Homo	INTERGENIC
SBS	Chr6	3395409	G-A	Homo	INTERGENIC
SBS	Chr6	13548450	T-A	Homo	INTERGENIC
SBS	Chr6	28820853	G-A	Hetero	INTERGENIC
SBS	Chr6	29220318	T-C	Hetero	INTRON
SBS	Chr6	29408244	G-A	Hetero	INTRON
SBS	Chr7	14639205	C-T	Homo	INTERGENIC
SBS	Chr7	16975763	G-A	Hetero	INTERGENIC
SBS	Chr8	2919009	A-T	Hetero	INTRON
SBS	Chr8	3416193	A-G	Hetero	INTRON
SBS	Chr8	7010745	C-T	Homo	INTERGENIC
SBS	Chr8	11594352	G-A	Hetero	INTERGENIC
SBS	Chr8	13857986	C-T	Hetero	INTERGENIC
SBS	Chr9	8632661	G-A	Hetero	INTERGENIC
SBS	Chr9	15929139	A-G	Hetero	INTRON
SBS	Chr9	19174371	A-T	Hetero	INTERGENIC
SBS	Chr10	5540106	T-A	Homo	INTERGENIC
SBS	Chr10	6903716	T-A	Hetero	INTERGENIC
SBS	Chr10	7733991	C-T	Hetero	INTERGENIC
SBS	Chr11	3091641	G-T	Homo	INTERGENIC
SBS	Chr11	14895786	A-G	Hetero	INTERGENIC
SBS	Chr12	9460231	G-A	Hetero	INTERGENIC
SBS	Chr12	10395399	G-A	Hetero	INTERGENIC
SBS	Chr12	13389450	G-A	Hetero	INTERGENIC
SBS	Chr12	20432659	T-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1133516	1133517	1
Deletion	Chr12	1585945	1585951	6	OsKitaake12g024201
Deletion	Chr8	4831893	4831895	2
Deletion	Chr6	7380965	7380970	5
Deletion	Chr11	8121778	8121782	4
Deletion	Chr4	10098001	10104000	5999
Deletion	Chr6	11700157	11700168	11
Deletion	Chr5	13847174	13847189	15
Deletion	Chr8	13888723	13888724	1
Deletion	Chr12	20397670	20397671	1
Deletion	Chr12	23134024	23134031	7
Deletion	Chr4	23483249	23483251	2
Deletion	Chr12	26824908	26824913	5
Deletion	Chr3	33102865	33102866	1
Deletion	Chr1	40876401	40876404	3
Deletion	Chr1	43711607	43711613	6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	13169493	Chr5	26844624	OsKitaake05g239900
Translocation	Chr8	13169500	Chr1	20419582

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes