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Mutant Information

Mutant Name	FN2754-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2754-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 66

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3043387 G-A Hetero INTERGENIC
SBS Chr1 3551413 A-T Hetero SPLICE_SITE_REGION
SBS Chr1 7161868 G-A Hetero INTERGENIC
SBS Chr1 11293680 T-C Hetero INTERGENIC
SBS Chr1 19040141 C-T Hetero INTERGENIC
SBS Chr1 19272755 G-C Hetero INTERGENIC
SBS Chr1 19451119 C-T Hetero INTERGENIC
SBS Chr1 26034240 T-G Hetero INTERGENIC
SBS Chr1 26389423 T-C Hetero INTERGENIC
SBS Chr1 27106272 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 27106283 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g263500
SBS Chr1 35793728 G-A Hetero INTRON
SBS Chr1 38064641 T-A Hetero INTRON
SBS Chr1 38648500 C-A Hetero INTERGENIC
SBS Chr1 42240321 C-T Hetero INTERGENIC
SBS Chr1 42447613 C-T Hetero INTERGENIC
SBS Chr2 4570105 A-G Hetero INTERGENIC
SBS Chr2 8107991 T-A Hetero INTERGENIC
SBS Chr2 15184016 A-T Hetero INTERGENIC
SBS Chr2 27015691 G-A Hetero INTRON
SBS Chr2 34755396 C-T Hetero INTERGENIC
SBS Chr2 35434513 G-T Hetero INTRON
SBS Chr3 15019727 A-G Hetero INTRON
SBS Chr3 18806407 G-A Hetero INTERGENIC
SBS Chr3 24283522 C-T Hetero INTRON
SBS Chr3 24680878 C-T Hetero START_GAINED
SBS Chr3 24680884 C-T Hetero UTR_5_PRIME
SBS Chr3 26067568 G-C Hetero INTERGENIC
SBS Chr3 31515701 G-A Hetero INTERGENIC
SBS Chr4 7931232 C-G Hetero INTERGENIC
SBS Chr4 13435365 C-T Hetero INTERGENIC
SBS Chr4 17736152 A-G Hetero INTERGENIC
SBS Chr4 18504447 G-C Hetero INTERGENIC
SBS Chr4 21584840 C-A Homo INTERGENIC
SBS Chr4 29865380 G-T Homo INTERGENIC
SBS Chr4 29865381 T-A Homo INTERGENIC
SBS Chr4 36522325 G-A Hetero INTERGENIC
SBS Chr5 4043397 A-G Hetero INTERGENIC
SBS Chr5 19430302 G-T Homo INTERGENIC
SBS Chr5 30007584 A-T Hetero INTERGENIC
SBS Chr6 2866706 G-A Hetero INTRON
SBS Chr6 4791311 T-C Hetero INTERGENIC
SBS Chr6 7977659 T-C Hetero INTERGENIC
SBS Chr6 9249851 A-T Hetero INTERGENIC
SBS Chr6 16881916 T-C Hetero INTRON
SBS Chr6 22379259 G-A Hetero INTERGENIC
SBS Chr6 29844832 T-C Hetero INTERGENIC
SBS Chr7 779463 T-G Hetero INTERGENIC
SBS Chr7 6574011 T-C Hetero INTERGENIC
SBS Chr7 7535977 A-T Hetero INTERGENIC
SBS Chr7 18238901 T-C Hetero UTR_3_PRIME
SBS Chr8 6965566 C-T Hetero INTERGENIC
SBS Chr8 12458574 C-T Hetero INTERGENIC
SBS Chr8 21749967 C-A Hetero INTERGENIC
SBS Chr8 22682360 T-A Hetero INTERGENIC
SBS Chr9 513295 A-T Hetero INTERGENIC
SBS Chr10 1863268 C-T Hetero INTRON
SBS Chr10 8416146 T-C Hetero INTERGENIC
SBS Chr10 11928470 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g071000
SBS Chr10 13281833 G-A Hetero INTERGENIC
SBS Chr10 13281836 G-T Hetero INTERGENIC
SBS Chr10 20175234 C-T Hetero INTERGENIC
SBS Chr10 23594951 C-A Hetero SYNONYMOUS_CODING
SBS Chr11 10413932 C-T Hetero INTERGENIC
SBS Chr12 12368771 C-A Hetero INTERGENIC
SBS Chr12 16594519 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 655001 689000 33999 3
Deletion Chr8 2469535 2469620 85
Deletion Chr8 8952008 8952009 1
Deletion Chr12 11603951 11603958 7
Deletion Chr2 14170049 14170050 1
Deletion Chr6 19072950 19072955 5
Deletion Chr8 19145001 19233000 87999 OsKitaake08g141400
Deletion Chr4 19429001 19449000 19999 OsKitaake04g099601
Deletion Chr11 27593687 27593688 1
Deletion Chr7 28220069 28220082 13
Deletion Chr4 35968761 35968763 2
Deletion Chr1 43691615 43691616 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14881151 14881154 2
Insertion Chr1 30401076 30401079 2
Insertion Chr2 33921110 33921113 2
Insertion Chr3 21993943 21993946 2
Insertion Chr4 20479965 20479969 3
Insertion Chr8 3359168 3359171 2
Insertion Chr8 8353839 8353843 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3209730 3551273 2
Inversion Chr1 3209740 3551287 2
Inversion Chr8 18466890 19140116 OsKitaake08g137400
Inversion Chr8 18466910 19232786 OsKitaake08g137400
Inversion Chr7 25397227 25660747 OsKitaake07g233800

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 2565420 Chr3 30900695 2
Translocation Chr9 8840859 Chr7 25660755 OsKitaake07g233800
Translocation Chr9 8840867 Chr7 25397245
Translocation Chr12 9984009 Chr6 11596043
Translocation Chr12 9984125 Chr6 11593121
Translocation Chr12 15564984 Chr6 2565426 2
Translocation Chr12 15565380 Chr3 30901224 OsKitaake12g120700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3043387	G-A	Hetero	INTERGENIC
SBS	Chr1	3551413	A-T	Hetero	SPLICE_SITE_REGION
SBS	Chr1	7161868	G-A	Hetero	INTERGENIC
SBS	Chr1	11293680	T-C	Hetero	INTERGENIC
SBS	Chr1	19040141	C-T	Hetero	INTERGENIC
SBS	Chr1	19272755	G-C	Hetero	INTERGENIC
SBS	Chr1	19451119	C-T	Hetero	INTERGENIC
SBS	Chr1	26034240	T-G	Hetero	INTERGENIC
SBS	Chr1	26389423	T-C	Hetero	INTERGENIC
SBS	Chr1	27106272	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	27106283	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g263500
SBS	Chr1	35793728	G-A	Hetero	INTRON
SBS	Chr1	38064641	T-A	Hetero	INTRON
SBS	Chr1	38648500	C-A	Hetero	INTERGENIC
SBS	Chr1	42240321	C-T	Hetero	INTERGENIC
SBS	Chr1	42447613	C-T	Hetero	INTERGENIC
SBS	Chr2	4570105	A-G	Hetero	INTERGENIC
SBS	Chr2	8107991	T-A	Hetero	INTERGENIC
SBS	Chr2	15184016	A-T	Hetero	INTERGENIC
SBS	Chr2	27015691	G-A	Hetero	INTRON
SBS	Chr2	34755396	C-T	Hetero	INTERGENIC
SBS	Chr2	35434513	G-T	Hetero	INTRON
SBS	Chr3	15019727	A-G	Hetero	INTRON
SBS	Chr3	18806407	G-A	Hetero	INTERGENIC
SBS	Chr3	24283522	C-T	Hetero	INTRON
SBS	Chr3	24680878	C-T	Hetero	START_GAINED
SBS	Chr3	24680884	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	26067568	G-C	Hetero	INTERGENIC
SBS	Chr3	31515701	G-A	Hetero	INTERGENIC
SBS	Chr4	7931232	C-G	Hetero	INTERGENIC
SBS	Chr4	13435365	C-T	Hetero	INTERGENIC
SBS	Chr4	17736152	A-G	Hetero	INTERGENIC
SBS	Chr4	18504447	G-C	Hetero	INTERGENIC
SBS	Chr4	21584840	C-A	Homo	INTERGENIC
SBS	Chr4	29865380	G-T	Homo	INTERGENIC
SBS	Chr4	29865381	T-A	Homo	INTERGENIC
SBS	Chr4	36522325	G-A	Hetero	INTERGENIC
SBS	Chr5	4043397	A-G	Hetero	INTERGENIC
SBS	Chr5	19430302	G-T	Homo	INTERGENIC
SBS	Chr5	30007584	A-T	Hetero	INTERGENIC
SBS	Chr6	2866706	G-A	Hetero	INTRON
SBS	Chr6	4791311	T-C	Hetero	INTERGENIC
SBS	Chr6	7977659	T-C	Hetero	INTERGENIC
SBS	Chr6	9249851	A-T	Hetero	INTERGENIC
SBS	Chr6	16881916	T-C	Hetero	INTRON
SBS	Chr6	22379259	G-A	Hetero	INTERGENIC
SBS	Chr6	29844832	T-C	Hetero	INTERGENIC
SBS	Chr7	779463	T-G	Hetero	INTERGENIC
SBS	Chr7	6574011	T-C	Hetero	INTERGENIC
SBS	Chr7	7535977	A-T	Hetero	INTERGENIC
SBS	Chr7	18238901	T-C	Hetero	UTR_3_PRIME
SBS	Chr8	6965566	C-T	Hetero	INTERGENIC
SBS	Chr8	12458574	C-T	Hetero	INTERGENIC
SBS	Chr8	21749967	C-A	Hetero	INTERGENIC
SBS	Chr8	22682360	T-A	Hetero	INTERGENIC
SBS	Chr9	513295	A-T	Hetero	INTERGENIC
SBS	Chr10	1863268	C-T	Hetero	INTRON
SBS	Chr10	8416146	T-C	Hetero	INTERGENIC
SBS	Chr10	11928470	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g071000
SBS	Chr10	13281833	G-A	Hetero	INTERGENIC
SBS	Chr10	13281836	G-T	Hetero	INTERGENIC
SBS	Chr10	20175234	C-T	Hetero	INTERGENIC
SBS	Chr10	23594951	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr11	10413932	C-T	Hetero	INTERGENIC
SBS	Chr12	12368771	C-A	Hetero	INTERGENIC
SBS	Chr12	16594519	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	655001	689000	33999	3
Deletion	Chr8	2469535	2469620	85
Deletion	Chr8	8952008	8952009	1
Deletion	Chr12	11603951	11603958	7
Deletion	Chr2	14170049	14170050	1
Deletion	Chr6	19072950	19072955	5
Deletion	Chr8	19145001	19233000	87999	OsKitaake08g141400
Deletion	Chr4	19429001	19449000	19999	OsKitaake04g099601
Deletion	Chr11	27593687	27593688	1
Deletion	Chr7	28220069	28220082	13
Deletion	Chr4	35968761	35968763	2
Deletion	Chr1	43691615	43691616	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3209730	3551273	2
Inversion	Chr1	3209740	3551287	2
Inversion	Chr8	18466890	19140116	OsKitaake08g137400
Inversion	Chr8	18466910	19232786	OsKitaake08g137400
Inversion	Chr7	25397227	25660747	OsKitaake07g233800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes