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Mutant Information

Mutant Name	FN2755-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2755-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 73

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9582420 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g122700
SBS Chr1 38541049 G-C Hetero INTERGENIC
SBS Chr1 38541050 C-A Hetero INTERGENIC
SBS Chr2 2669993 G-A Homo INTERGENIC
SBS Chr2 15126290 C-T Hetero INTERGENIC
SBS Chr2 21260458 A-C Homo INTRON
SBS Chr2 32182304 T-C Hetero INTRON
SBS Chr2 34768957 T-C Hetero INTERGENIC
SBS Chr2 35692541 C-T Hetero INTERGENIC
SBS Chr3 3866803 G-A Hetero INTERGENIC
SBS Chr3 13659546 C-T Homo INTERGENIC
SBS Chr3 17357018 C-T Hetero UTR_3_PRIME
SBS Chr3 21884981 C-T Hetero INTERGENIC
SBS Chr3 24195620 C-T Homo INTERGENIC
SBS Chr3 33351934 T-A Hetero INTERGENIC
SBS Chr4 2604826 G-A Homo INTERGENIC
SBS Chr4 34447732 C-T Hetero INTERGENIC
SBS Chr4 36223860 C-T Hetero INTRON
SBS Chr4 36537928 C-A Hetero INTERGENIC
SBS Chr5 7974416 A-T Homo INTRON
SBS Chr6 2785704 C-T Hetero INTERGENIC
SBS Chr6 20278753 T-C Hetero INTERGENIC
SBS Chr6 21283562 C-T Hetero INTERGENIC
SBS Chr6 24971365 A-T Hetero INTERGENIC
SBS Chr7 2032908 G-T Homo INTERGENIC
SBS Chr7 2515680 G-C Homo INTERGENIC
SBS Chr7 5046227 A-G Hetero INTERGENIC
SBS Chr7 6788965 T-C Hetero INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr8 10613378 A-G Hetero INTRON
SBS Chr8 18383958 A-G Hetero INTRON
SBS Chr8 25997250 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g206600
SBS Chr10 4640822 G-A Hetero INTERGENIC
SBS Chr10 19699357 C-T Hetero INTERGENIC
SBS Chr11 29286271 T-G Homo INTERGENIC
SBS Chr12 12937125 C-T Hetero INTERGENIC
SBS Chr12 14658279 G-A Hetero INTERGENIC
SBS Chr12 21607545 G-A Hetero INTERGENIC
SBS Chr12 23781276 T-A Hetero INTERGENIC
SBS Chr1 1461120 C-G Homo SYNONYMOUS_CODING
SBS Chr1 22355156 A-G Homo INTRON
SBS Chr1 38851525 T-C Homo UTR_3_PRIME
SBS Chr1 44114631 G-A Hetero INTERGENIC
SBS Chr1 44265979 C-A Hetero INTERGENIC
SBS Chr2 4762058 A-T Hetero INTRON
SBS Chr2 13605692 G-C Hetero INTERGENIC
SBS Chr2 17982863 T-A Homo INTRON
SBS Chr2 36566645 T-C Hetero INTRON
SBS Chr3 7987101 C-T Hetero INTERGENIC
SBS Chr3 12544061 C-T Hetero UTR_3_PRIME
SBS Chr3 23211985 T-C Hetero INTERGENIC
SBS Chr3 30086758 T-A Hetero INTERGENIC
SBS Chr3 30522397 C-A Homo INTERGENIC
SBS Chr4 1734030 A-G Hetero INTERGENIC
SBS Chr4 21736300 G-T Hetero INTERGENIC
SBS Chr5 11010736 C-T Homo INTERGENIC
SBS Chr5 16473566 C-T Hetero INTERGENIC
SBS Chr5 20183469 G-A Hetero INTERGENIC
SBS Chr6 9180016 C-T Hetero INTERGENIC
SBS Chr6 21693326 A-G Homo INTERGENIC
SBS Chr7 320384 T-A Hetero INTERGENIC
SBS Chr7 8164538 T-C Hetero INTRON
SBS Chr7 11205402 T-A Homo INTERGENIC
SBS Chr7 18168912 G-A Hetero INTERGENIC
SBS Chr7 20354016 T-C Hetero INTERGENIC
SBS Chr10 19791849 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g147400
SBS Chr10 19794734 C-G Hetero INTRON
SBS Chr11 3407124 C-T Hetero INTRON
SBS Chr11 4229411 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g056900
SBS Chr11 10601497 G-A Homo INTERGENIC
SBS Chr11 21612672 T-A Hetero INTERGENIC
SBS Chr12 7852522 G-T Hetero INTERGENIC
SBS Chr12 9424355 C-T Hetero INTERGENIC

Deletions: 38

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 75029 75055 26
Deletion Chr7 1111769 1111774 5
Deletion Chr5 1806595 1806596 1
Deletion Chr1 4162231 4162237 6
Deletion Chr7 6138061 6138064 3
Deletion Chr2 7352001 7552000 199999 14
Deletion Chr12 7589831 7589833 2
Deletion Chr9 7801001 7818000 16999
Deletion Chr10 9684113 9684115 2
Deletion Chr5 10304566 10304567 1
Deletion Chr9 10596001 10626000 29999 3
Deletion Chr11 10873001 10889000 15999 OsKitaake11g105800
Deletion Chr1 10943043 10943073 30
Deletion Chr12 11340740 11340754 14
Deletion Chr4 11787203 11787205 2
Deletion Chr1 12884243 12884249 6
Deletion Chr9 13450672 13450699 27
Deletion Chr7 13725001 13729000 3999
Deletion Chr6 15758741 15758897 156
Deletion Chr6 16451513 16451514 1
Deletion Chr7 16925001 16948000 22999 2
Deletion Chr6 17154973 17154978 5
Deletion Chr1 17195032 17195187 155
Deletion Chr6 18198406 18198407 1
Deletion Chr5 18399627 18399628 1
Deletion Chr11 18639092 18639093 1
Deletion Chr8 19252001 19267000 14999
Deletion Chr5 19615511 19615512 1
Deletion Chr5 20563770 20563771 1
Deletion Chr10 22256227 22256232 5 OsKitaake10g181800
Deletion Chr2 22909745 22909753 8
Deletion Chr1 23023289 23023297 8
Deletion Chr6 25050255 25050342 87 OsKitaake06g222100
Deletion Chr5 25565910 25565919 9 OsKitaake05g224300
Deletion Chr6 25881341 25881345 4
Deletion Chr11 26189912 26189914 2
Deletion Chr1 30364182 30364192 10
Deletion Chr1 31972667 31972673 6

Insertions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18926298 18926301 2
Insertion Chr2 8727234 8727237 2
Insertion Chr3 24593301 24593304 2
Insertion Chr3 32862306 32862309 2
Insertion Chr6 10242391 10242394 2
Insertion Chr8 13782245 13782248 2
Insertion Chr12 9120657 9120660 2
Insertion Chr1 4914522 4914527 4
Insertion Chr1 22375548 22375552 3
Insertion Chr2 14077817 14077820 2
Insertion Chr3 24613060 24613063 2
Insertion Chr4 6796016 6796021 4
Insertion Chr9 18678225 18678227 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 11489256 11507410
Inversion Chr4 11489258 11507415
Inversion Chr11 19064923 19068286
Inversion Chr6 24282702 24284624

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8590652 Chr1 17250321
Translocation Chr6 11966840 Chr5 18504976
Translocation Chr6 11967329 Chr5 18505006
Translocation Chr8 16836429 Chr6 24292190
Translocation Chr11 19563275 Chr2 7551360
Translocation Chr11 19563287 Chr2 7550903
Translocation Chr9 21301417 Chr3 5944704 OsKitaake03g084700
Translocation Chr9 21302730 Chr3 5944697 OsKitaake03g084700
Translocation Chr9 21302748 Chr1 41161961 OsKitaake01g449300
Translocation Chr9 21303307 Chr1 41161915 OsKitaake01g449300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9582420	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g122700
SBS	Chr1	38541049	G-C	Hetero	INTERGENIC
SBS	Chr1	38541050	C-A	Hetero	INTERGENIC
SBS	Chr2	2669993	G-A	Homo	INTERGENIC
SBS	Chr2	15126290	C-T	Hetero	INTERGENIC
SBS	Chr2	21260458	A-C	Homo	INTRON
SBS	Chr2	32182304	T-C	Hetero	INTRON
SBS	Chr2	34768957	T-C	Hetero	INTERGENIC
SBS	Chr2	35692541	C-T	Hetero	INTERGENIC
SBS	Chr3	3866803	G-A	Hetero	INTERGENIC
SBS	Chr3	13659546	C-T	Homo	INTERGENIC
SBS	Chr3	17357018	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	21884981	C-T	Hetero	INTERGENIC
SBS	Chr3	24195620	C-T	Homo	INTERGENIC
SBS	Chr3	33351934	T-A	Hetero	INTERGENIC
SBS	Chr4	2604826	G-A	Homo	INTERGENIC
SBS	Chr4	34447732	C-T	Hetero	INTERGENIC
SBS	Chr4	36223860	C-T	Hetero	INTRON
SBS	Chr4	36537928	C-A	Hetero	INTERGENIC
SBS	Chr5	7974416	A-T	Homo	INTRON
SBS	Chr6	2785704	C-T	Hetero	INTERGENIC
SBS	Chr6	20278753	T-C	Hetero	INTERGENIC
SBS	Chr6	21283562	C-T	Hetero	INTERGENIC
SBS	Chr6	24971365	A-T	Hetero	INTERGENIC
SBS	Chr7	2032908	G-T	Homo	INTERGENIC
SBS	Chr7	2515680	G-C	Homo	INTERGENIC
SBS	Chr7	5046227	A-G	Hetero	INTERGENIC
SBS	Chr7	6788965	T-C	Hetero	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr8	10613378	A-G	Hetero	INTRON
SBS	Chr8	18383958	A-G	Hetero	INTRON
SBS	Chr8	25997250	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g206600
SBS	Chr10	4640822	G-A	Hetero	INTERGENIC
SBS	Chr10	19699357	C-T	Hetero	INTERGENIC
SBS	Chr11	29286271	T-G	Homo	INTERGENIC
SBS	Chr12	12937125	C-T	Hetero	INTERGENIC
SBS	Chr12	14658279	G-A	Hetero	INTERGENIC
SBS	Chr12	21607545	G-A	Hetero	INTERGENIC
SBS	Chr12	23781276	T-A	Hetero	INTERGENIC
SBS	Chr1	1461120	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr1	22355156	A-G	Homo	INTRON
SBS	Chr1	38851525	T-C	Homo	UTR_3_PRIME
SBS	Chr1	44114631	G-A	Hetero	INTERGENIC
SBS	Chr1	44265979	C-A	Hetero	INTERGENIC
SBS	Chr2	4762058	A-T	Hetero	INTRON
SBS	Chr2	13605692	G-C	Hetero	INTERGENIC
SBS	Chr2	17982863	T-A	Homo	INTRON
SBS	Chr2	36566645	T-C	Hetero	INTRON
SBS	Chr3	7987101	C-T	Hetero	INTERGENIC
SBS	Chr3	12544061	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	23211985	T-C	Hetero	INTERGENIC
SBS	Chr3	30086758	T-A	Hetero	INTERGENIC
SBS	Chr3	30522397	C-A	Homo	INTERGENIC
SBS	Chr4	1734030	A-G	Hetero	INTERGENIC
SBS	Chr4	21736300	G-T	Hetero	INTERGENIC
SBS	Chr5	11010736	C-T	Homo	INTERGENIC
SBS	Chr5	16473566	C-T	Hetero	INTERGENIC
SBS	Chr5	20183469	G-A	Hetero	INTERGENIC
SBS	Chr6	9180016	C-T	Hetero	INTERGENIC
SBS	Chr6	21693326	A-G	Homo	INTERGENIC
SBS	Chr7	320384	T-A	Hetero	INTERGENIC
SBS	Chr7	8164538	T-C	Hetero	INTRON
SBS	Chr7	11205402	T-A	Homo	INTERGENIC
SBS	Chr7	18168912	G-A	Hetero	INTERGENIC
SBS	Chr7	20354016	T-C	Hetero	INTERGENIC
SBS	Chr10	19791849	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g147400
SBS	Chr10	19794734	C-G	Hetero	INTRON
SBS	Chr11	3407124	C-T	Hetero	INTRON
SBS	Chr11	4229411	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g056900
SBS	Chr11	10601497	G-A	Homo	INTERGENIC
SBS	Chr11	21612672	T-A	Hetero	INTERGENIC
SBS	Chr12	7852522	G-T	Hetero	INTERGENIC
SBS	Chr12	9424355	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	75029	75055	26
Deletion	Chr7	1111769	1111774	5
Deletion	Chr5	1806595	1806596	1
Deletion	Chr1	4162231	4162237	6
Deletion	Chr7	6138061	6138064	3
Deletion	Chr2	7352001	7552000	199999	14
Deletion	Chr12	7589831	7589833	2
Deletion	Chr9	7801001	7818000	16999
Deletion	Chr10	9684113	9684115	2
Deletion	Chr5	10304566	10304567	1
Deletion	Chr9	10596001	10626000	29999	3
Deletion	Chr11	10873001	10889000	15999	OsKitaake11g105800
Deletion	Chr1	10943043	10943073	30
Deletion	Chr12	11340740	11340754	14
Deletion	Chr4	11787203	11787205	2
Deletion	Chr1	12884243	12884249	6
Deletion	Chr9	13450672	13450699	27
Deletion	Chr7	13725001	13729000	3999
Deletion	Chr6	15758741	15758897	156
Deletion	Chr6	16451513	16451514	1
Deletion	Chr7	16925001	16948000	22999	2
Deletion	Chr6	17154973	17154978	5
Deletion	Chr1	17195032	17195187	155
Deletion	Chr6	18198406	18198407	1
Deletion	Chr5	18399627	18399628	1
Deletion	Chr11	18639092	18639093	1
Deletion	Chr8	19252001	19267000	14999
Deletion	Chr5	19615511	19615512	1
Deletion	Chr5	20563770	20563771	1
Deletion	Chr10	22256227	22256232	5	OsKitaake10g181800
Deletion	Chr2	22909745	22909753	8
Deletion	Chr1	23023289	23023297	8
Deletion	Chr6	25050255	25050342	87	OsKitaake06g222100
Deletion	Chr5	25565910	25565919	9	OsKitaake05g224300
Deletion	Chr6	25881341	25881345	4
Deletion	Chr11	26189912	26189914	2
Deletion	Chr1	30364182	30364192	10
Deletion	Chr1	31972667	31972673	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	11489256	11507410
Inversion	Chr4	11489258	11507415
Inversion	Chr11	19064923	19068286
Inversion	Chr6	24282702	24284624

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes