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Mutant Information

Mutant Name	FN2755-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2755-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2586641 T-C Hetero INTERGENIC
SBS Chr1 9582420 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g122700
SBS Chr1 38541049 G-C Hetero INTERGENIC
SBS Chr1 38541050 C-A Hetero INTERGENIC
SBS Chr2 2669993 G-A Homo INTERGENIC
SBS Chr2 8727240 G-T Hetero INTERGENIC
SBS Chr2 21260458 A-C Homo INTRON
SBS Chr2 34043012 C-T Hetero INTERGENIC
SBS Chr2 34768957 T-C Hetero INTERGENIC
SBS Chr3 24195620 C-T Homo INTERGENIC
SBS Chr3 27983260 G-A Hetero INTERGENIC
SBS Chr4 2604826 G-A Homo INTERGENIC
SBS Chr4 34447732 C-T Hetero INTERGENIC
SBS Chr5 1545632 G-A Hetero INTRON
SBS Chr5 3665572 T-G Hetero INTERGENIC
SBS Chr5 7974416 A-T Homo INTRON
SBS Chr5 22094033 G-A Hetero INTERGENIC
SBS Chr6 2785704 C-T Hetero INTERGENIC
SBS Chr6 24971365 A-T Hetero INTERGENIC
SBS Chr7 2032908 G-T Homo INTERGENIC
SBS Chr7 2515680 G-C Homo INTERGENIC
SBS Chr7 13836218 C-T Hetero INTERGENIC
SBS Chr7 20827585 C-T Homo INTERGENIC
SBS Chr8 3442910 C-T Hetero INTERGENIC
SBS Chr8 25997250 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g206600
SBS Chr9 13189297 C-T Hetero INTERGENIC
SBS Chr9 18852620 G-A Hetero INTERGENIC
SBS Chr10 3782801 A-G Hetero INTERGENIC
SBS Chr10 4640822 G-A Hetero INTERGENIC
SBS Chr10 18476184 C-T Hetero INTERGENIC
SBS Chr11 16530516 T-G Hetero INTERGENIC
SBS Chr11 29286271 T-G Homo INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 1111769 1111774 5
Deletion Chr6 1741786 1741788 2
Deletion Chr7 6138061 6138064 3
Deletion Chr2 7352001 7553000 200999 15
Deletion Chr12 7589831 7589833 2
Deletion Chr12 11340740 11340754 14
Deletion Chr4 11787203 11787205 2
Deletion Chr6 16451513 16451514 1
Deletion Chr6 17154973 17154978 5
Deletion Chr5 18399627 18399628 1
Deletion Chr5 20563770 20563771 1
Deletion Chr10 22256227 22256232 5 OsKitaake10g181800
Deletion Chr2 22909745 22909753 8
Deletion Chr5 25565910 25565919 9 OsKitaake05g224300
Deletion Chr11 26189912 26189914 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 18926298 18926301 2
Insertion Chr3 32862306 32862309 2
Insertion Chr5 26571832 26571835 2
Insertion Chr6 10242391 10242394 2
Insertion Chr8 13782245 13782248 2
Insertion Chr11 7408404 7408407 2
Insertion Chr11 16685545 16685548 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 19064923 19068286
Inversion Chr6 24282702 24284624

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 16836429 Chr6 24292190
Translocation Chr11 19563275 Chr2 7551360
Translocation Chr11 19563287 Chr2 7550903

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2586641	T-C	Hetero	INTERGENIC
SBS	Chr1	9582420	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g122700
SBS	Chr1	38541049	G-C	Hetero	INTERGENIC
SBS	Chr1	38541050	C-A	Hetero	INTERGENIC
SBS	Chr2	2669993	G-A	Homo	INTERGENIC
SBS	Chr2	8727240	G-T	Hetero	INTERGENIC
SBS	Chr2	21260458	A-C	Homo	INTRON
SBS	Chr2	34043012	C-T	Hetero	INTERGENIC
SBS	Chr2	34768957	T-C	Hetero	INTERGENIC
SBS	Chr3	24195620	C-T	Homo	INTERGENIC
SBS	Chr3	27983260	G-A	Hetero	INTERGENIC
SBS	Chr4	2604826	G-A	Homo	INTERGENIC
SBS	Chr4	34447732	C-T	Hetero	INTERGENIC
SBS	Chr5	1545632	G-A	Hetero	INTRON
SBS	Chr5	3665572	T-G	Hetero	INTERGENIC
SBS	Chr5	7974416	A-T	Homo	INTRON
SBS	Chr5	22094033	G-A	Hetero	INTERGENIC
SBS	Chr6	2785704	C-T	Hetero	INTERGENIC
SBS	Chr6	24971365	A-T	Hetero	INTERGENIC
SBS	Chr7	2032908	G-T	Homo	INTERGENIC
SBS	Chr7	2515680	G-C	Homo	INTERGENIC
SBS	Chr7	13836218	C-T	Hetero	INTERGENIC
SBS	Chr7	20827585	C-T	Homo	INTERGENIC
SBS	Chr8	3442910	C-T	Hetero	INTERGENIC
SBS	Chr8	25997250	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g206600
SBS	Chr9	13189297	C-T	Hetero	INTERGENIC
SBS	Chr9	18852620	G-A	Hetero	INTERGENIC
SBS	Chr10	3782801	A-G	Hetero	INTERGENIC
SBS	Chr10	4640822	G-A	Hetero	INTERGENIC
SBS	Chr10	18476184	C-T	Hetero	INTERGENIC
SBS	Chr11	16530516	T-G	Hetero	INTERGENIC
SBS	Chr11	29286271	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	1111769	1111774	5
Deletion	Chr6	1741786	1741788	2
Deletion	Chr7	6138061	6138064	3
Deletion	Chr2	7352001	7553000	200999	15
Deletion	Chr12	7589831	7589833	2
Deletion	Chr12	11340740	11340754	14
Deletion	Chr4	11787203	11787205	2
Deletion	Chr6	16451513	16451514	1
Deletion	Chr6	17154973	17154978	5
Deletion	Chr5	18399627	18399628	1
Deletion	Chr5	20563770	20563771	1
Deletion	Chr10	22256227	22256232	5	OsKitaake10g181800
Deletion	Chr2	22909745	22909753	8
Deletion	Chr5	25565910	25565919	9	OsKitaake05g224300
Deletion	Chr11	26189912	26189914	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	19064923	19068286
Inversion	Chr6	24282702	24284624

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes