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Mutant Information

Mutant Name	FN2756-S-1 [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2756-S-1 Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2737169 T-A Hetero INTERGENIC
SBS Chr1 2737170 T-A Hetero INTERGENIC
SBS Chr1 10509155 T-A Hetero INTERGENIC
SBS Chr1 26683900 G-A Hetero INTERGENIC
SBS Chr1 31478155 A-G Hetero INTERGENIC
SBS Chr1 32600972 T-A Hetero INTERGENIC
SBS Chr1 32654183 A-T Hetero INTRON
SBS Chr1 32654184 C-T Hetero INTRON
SBS Chr1 33418863 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 41228638 T-A Hetero INTRON
SBS Chr2 4347874 G-A Hetero INTRON
SBS Chr2 12164171 T-C Hetero SYNONYMOUS_CODING
SBS Chr2 32832213 C-A Hetero INTERGENIC
SBS Chr2 34280581 G-T Hetero INTERGENIC
SBS Chr2 34890781 G-A Homo INTERGENIC
SBS Chr2 35793413 G-A Hetero INTERGENIC
SBS Chr3 26835407 T-C Hetero INTERGENIC
SBS Chr3 33041810 C-T Hetero INTRON
SBS Chr3 33870184 G-A Hetero INTERGENIC
SBS Chr4 1303952 C-G Homo INTERGENIC
SBS Chr4 16047224 G-A Hetero INTERGENIC
SBS Chr6 5556933 A-G Hetero INTERGENIC
SBS Chr7 1122766 T-C Hetero INTERGENIC
SBS Chr7 3060868 G-T Homo INTERGENIC
SBS Chr8 628905 T-C Hetero INTERGENIC
SBS Chr8 2101963 C-T Homo INTERGENIC
SBS Chr8 24966829 C-T Homo INTERGENIC
SBS Chr8 24966830 C-T Homo INTERGENIC
SBS Chr8 25752632 G-A Homo INTERGENIC
SBS Chr9 14771284 C-A Hetero INTERGENIC
SBS Chr10 2900635 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g023700
SBS Chr10 7428777 A-G Hetero INTRON
SBS Chr11 2528229 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g036800
SBS Chr11 6196012 T-C Hetero INTRON
SBS Chr11 12681857 G-T Homo INTERGENIC
SBS Chr12 12904326 T-A Homo INTERGENIC
SBS Chr12 18869278 G-A Homo INTERGENIC
SBS Chr12 23412061 G-A Hetero INTERGENIC

Deletions: 25

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2605804 2605807 3
Deletion Chr4 4529132 4529133 1
Deletion Chr7 4746291 4746294 3
Deletion Chr6 6202822 6202824 2
Deletion Chr2 6239001 6336000 96999 15
Deletion Chr6 7546041 7546051 10
Deletion Chr6 8132395 8132397 2
Deletion Chr1 9973266 9973272 6
Deletion Chr5 11077904 11077911 7
Deletion Chr7 12137156 12137159 3
Deletion Chr7 12542042 12542069 27
Deletion Chr11 12772045 12772058 13
Deletion Chr4 12977607 12977615 8
Deletion Chr11 12996927 12996928 1
Deletion Chr7 13832261 13832271 10
Deletion Chr9 14282947 14282956 9
Deletion Chr9 15022705 15022711 6 OsKitaake09g103800
Deletion Chr1 16208952 16208954 2
Deletion Chr3 18645002 18645004 2
Deletion Chr4 18930222 18930248 26
Deletion Chr11 24250793 24250798 5
Deletion Chr12 26721080 26721082 2
Deletion Chr7 28907917 28907919 2
Deletion Chr3 30898449 30898453 4 OsKitaake03g324500
Deletion Chr2 33982132 33982137 5

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 324015 324018 2
Insertion Chr3 3524707 3524709 1
Insertion Chr3 30678658 30678660 1
Insertion Chr3 36958638 36958642 3
Insertion Chr4 1165756 1165759 2
Insertion Chr10 18102000 18102003 2
Insertion Chr10 19493606 19493609 2
Insertion Chr10 22173840 22173843 2
Insertion Chr12 26042288 26042292 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7193484 Chr11 12971876
Translocation Chr12 7194298 Chr11 12971870

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2737169	T-A	Hetero	INTERGENIC
SBS	Chr1	2737170	T-A	Hetero	INTERGENIC
SBS	Chr1	10509155	T-A	Hetero	INTERGENIC
SBS	Chr1	26683900	G-A	Hetero	INTERGENIC
SBS	Chr1	31478155	A-G	Hetero	INTERGENIC
SBS	Chr1	32600972	T-A	Hetero	INTERGENIC
SBS	Chr1	32654183	A-T	Hetero	INTRON
SBS	Chr1	32654184	C-T	Hetero	INTRON
SBS	Chr1	33418863	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	41228638	T-A	Hetero	INTRON
SBS	Chr2	4347874	G-A	Hetero	INTRON
SBS	Chr2	12164171	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	32832213	C-A	Hetero	INTERGENIC
SBS	Chr2	34280581	G-T	Hetero	INTERGENIC
SBS	Chr2	34890781	G-A	Homo	INTERGENIC
SBS	Chr2	35793413	G-A	Hetero	INTERGENIC
SBS	Chr3	26835407	T-C	Hetero	INTERGENIC
SBS	Chr3	33041810	C-T	Hetero	INTRON
SBS	Chr3	33870184	G-A	Hetero	INTERGENIC
SBS	Chr4	1303952	C-G	Homo	INTERGENIC
SBS	Chr4	16047224	G-A	Hetero	INTERGENIC
SBS	Chr6	5556933	A-G	Hetero	INTERGENIC
SBS	Chr7	1122766	T-C	Hetero	INTERGENIC
SBS	Chr7	3060868	G-T	Homo	INTERGENIC
SBS	Chr8	628905	T-C	Hetero	INTERGENIC
SBS	Chr8	2101963	C-T	Homo	INTERGENIC
SBS	Chr8	24966829	C-T	Homo	INTERGENIC
SBS	Chr8	24966830	C-T	Homo	INTERGENIC
SBS	Chr8	25752632	G-A	Homo	INTERGENIC
SBS	Chr9	14771284	C-A	Hetero	INTERGENIC
SBS	Chr10	2900635	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g023700
SBS	Chr10	7428777	A-G	Hetero	INTRON
SBS	Chr11	2528229	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g036800
SBS	Chr11	6196012	T-C	Hetero	INTRON
SBS	Chr11	12681857	G-T	Homo	INTERGENIC
SBS	Chr12	12904326	T-A	Homo	INTERGENIC
SBS	Chr12	18869278	G-A	Homo	INTERGENIC
SBS	Chr12	23412061	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2605804	2605807	3
Deletion	Chr4	4529132	4529133	1
Deletion	Chr7	4746291	4746294	3
Deletion	Chr6	6202822	6202824	2
Deletion	Chr2	6239001	6336000	96999	15
Deletion	Chr6	7546041	7546051	10
Deletion	Chr6	8132395	8132397	2
Deletion	Chr1	9973266	9973272	6
Deletion	Chr5	11077904	11077911	7
Deletion	Chr7	12137156	12137159	3
Deletion	Chr7	12542042	12542069	27
Deletion	Chr11	12772045	12772058	13
Deletion	Chr4	12977607	12977615	8
Deletion	Chr11	12996927	12996928	1
Deletion	Chr7	13832261	13832271	10
Deletion	Chr9	14282947	14282956	9
Deletion	Chr9	15022705	15022711	6	OsKitaake09g103800
Deletion	Chr1	16208952	16208954	2
Deletion	Chr3	18645002	18645004	2
Deletion	Chr4	18930222	18930248	26
Deletion	Chr11	24250793	24250798	5
Deletion	Chr12	26721080	26721082	2
Deletion	Chr7	28907917	28907919	2
Deletion	Chr3	30898449	30898453	4	OsKitaake03g324500
Deletion	Chr2	33982132	33982137	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7193484	Chr11	12971876
Translocation	Chr12	7194298	Chr11	12971870

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes