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Mutant Information

Mutant Name	FN2758-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2758-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 24404974 T-C Hetero INTERGENIC
SBS Chr1 26949761 G-A Hetero INTERGENIC
SBS Chr1 32536199 G-T Homo INTERGENIC
SBS Chr2 2473347 T-C Homo INTERGENIC
SBS Chr2 8936232 T-G Homo INTERGENIC
SBS Chr2 15111129 C-T Hetero INTERGENIC
SBS Chr2 17893123 G-A Hetero INTERGENIC
SBS Chr2 18381318 C-T Hetero INTERGENIC
SBS Chr2 30073865 G-C Homo INTERGENIC
SBS Chr3 4050293 C-T Hetero INTERGENIC
SBS Chr3 9769772 C-G Homo INTERGENIC
SBS Chr3 17069291 G-T Hetero INTERGENIC
SBS Chr3 33299325 G-A Hetero INTRON
SBS Chr3 36816239 T-C Hetero UTR_3_PRIME
SBS Chr4 9891399 C-G Hetero INTERGENIC
SBS Chr4 9971546 G-A Hetero INTERGENIC
SBS Chr4 11791560 G-A Hetero INTERGENIC
SBS Chr4 15995650 G-A Hetero INTERGENIC
SBS Chr4 21320194 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g118300
SBS Chr5 13170455 C-T Hetero INTERGENIC
SBS Chr5 22937028 T-A Homo INTERGENIC
SBS Chr5 26328686 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g232500
SBS Chr5 29995399 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g288200
SBS Chr7 5910219 G-C Hetero UTR_5_PRIME
SBS Chr8 3368375 T-A Hetero INTERGENIC
SBS Chr8 4700743 A-G Hetero INTERGENIC
SBS Chr8 6347867 G-A Hetero INTRON
SBS Chr8 19452999 G-T Hetero INTERGENIC
SBS Chr8 21429517 G-A Hetero SPLICE_SITE_REGION
SBS Chr8 26237335 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g209500
SBS Chr9 8981523 A-G Hetero SYNONYMOUS_CODING
SBS Chr9 11703049 C-T Hetero INTERGENIC
SBS Chr9 12030722 G-T Hetero INTERGENIC
SBS Chr10 6348852 C-T Hetero INTERGENIC
SBS Chr11 14585600 G-T Hetero INTERGENIC
SBS Chr11 23151989 C-T Hetero INTERGENIC
SBS Chr11 26521177 C-T Hetero INTERGENIC
SBS Chr12 21780943 T-C Hetero INTERGENIC
SBS Chr12 24338797 T-G Hetero INTERGENIC
SBS Chr12 26193336 T-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 2228975 2228979 4 OsKitaake02g033500
Deletion Chr4 2400311 2400312 1
Deletion Chr10 5038672 5038674 2
Deletion Chr4 8483535 8483543 8
Deletion Chr10 8530780 8530790 10
Deletion Chr3 14496416 14496418 2
Deletion Chr3 19660966 19660970 4
Deletion Chr5 20102683 20102684 1
Deletion Chr9 22636753 22636755 2
Deletion Chr2 22661297 22661298 1
Deletion Chr8 24824288 24824290 2
Deletion Chr2 27344146 27344150 4
Deletion Chr3 29768355 29768359 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1100237 1100241 3
Insertion Chr9 22247724 22247727 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 31589134 32427811 OsKitaake03g332750

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	24404974	T-C	Hetero	INTERGENIC
SBS	Chr1	26949761	G-A	Hetero	INTERGENIC
SBS	Chr1	32536199	G-T	Homo	INTERGENIC
SBS	Chr2	2473347	T-C	Homo	INTERGENIC
SBS	Chr2	8936232	T-G	Homo	INTERGENIC
SBS	Chr2	15111129	C-T	Hetero	INTERGENIC
SBS	Chr2	17893123	G-A	Hetero	INTERGENIC
SBS	Chr2	18381318	C-T	Hetero	INTERGENIC
SBS	Chr2	30073865	G-C	Homo	INTERGENIC
SBS	Chr3	4050293	C-T	Hetero	INTERGENIC
SBS	Chr3	9769772	C-G	Homo	INTERGENIC
SBS	Chr3	17069291	G-T	Hetero	INTERGENIC
SBS	Chr3	33299325	G-A	Hetero	INTRON
SBS	Chr3	36816239	T-C	Hetero	UTR_3_PRIME
SBS	Chr4	9891399	C-G	Hetero	INTERGENIC
SBS	Chr4	9971546	G-A	Hetero	INTERGENIC
SBS	Chr4	11791560	G-A	Hetero	INTERGENIC
SBS	Chr4	15995650	G-A	Hetero	INTERGENIC
SBS	Chr4	21320194	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g118300
SBS	Chr5	13170455	C-T	Hetero	INTERGENIC
SBS	Chr5	22937028	T-A	Homo	INTERGENIC
SBS	Chr5	26328686	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g232500
SBS	Chr5	29995399	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g288200
SBS	Chr7	5910219	G-C	Hetero	UTR_5_PRIME
SBS	Chr8	3368375	T-A	Hetero	INTERGENIC
SBS	Chr8	4700743	A-G	Hetero	INTERGENIC
SBS	Chr8	6347867	G-A	Hetero	INTRON
SBS	Chr8	19452999	G-T	Hetero	INTERGENIC
SBS	Chr8	21429517	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr8	26237335	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g209500
SBS	Chr9	8981523	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr9	11703049	C-T	Hetero	INTERGENIC
SBS	Chr9	12030722	G-T	Hetero	INTERGENIC
SBS	Chr10	6348852	C-T	Hetero	INTERGENIC
SBS	Chr11	14585600	G-T	Hetero	INTERGENIC
SBS	Chr11	23151989	C-T	Hetero	INTERGENIC
SBS	Chr11	26521177	C-T	Hetero	INTERGENIC
SBS	Chr12	21780943	T-C	Hetero	INTERGENIC
SBS	Chr12	24338797	T-G	Hetero	INTERGENIC
SBS	Chr12	26193336	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	2228975	2228979	4	OsKitaake02g033500
Deletion	Chr4	2400311	2400312	1
Deletion	Chr10	5038672	5038674	2
Deletion	Chr4	8483535	8483543	8
Deletion	Chr10	8530780	8530790	10
Deletion	Chr3	14496416	14496418	2
Deletion	Chr3	19660966	19660970	4
Deletion	Chr5	20102683	20102684	1
Deletion	Chr9	22636753	22636755	2
Deletion	Chr2	22661297	22661298	1
Deletion	Chr8	24824288	24824290	2
Deletion	Chr2	27344146	27344150	4
Deletion	Chr3	29768355	29768359	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	31589134	32427811	OsKitaake03g332750

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes