Search Kitaake

Mutant Information

Mutant Name	FN276-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN276-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4236920 G-A Homo NON_SYNONYMOUS_CODING OsKitaake01g056600
SBS Chr1 4236921 T-A Homo NON_SYNONYMOUS_CODING OsKitaake01g056600
SBS Chr1 8947263 G-A Homo INTERGENIC
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 15477466 G-C Hetero INTERGENIC
SBS Chr1 23733194 C-T Hetero INTERGENIC
SBS Chr2 31406151 G-A Hetero INTERGENIC
SBS Chr3 12908446 G-A Hetero INTERGENIC
SBS Chr3 23087598 A-T Homo INTERGENIC
SBS Chr4 2093649 G-A Hetero INTERGENIC
SBS Chr4 4797683 C-A Hetero INTERGENIC
SBS Chr4 13018531 A-T Hetero INTERGENIC
SBS Chr4 21688820 T-C Hetero INTERGENIC
SBS Chr5 874245 G-A Hetero INTRON
SBS Chr5 1685358 A-T Hetero INTERGENIC
SBS Chr5 14109770 C-T Hetero INTERGENIC
SBS Chr5 16086399 T-C Hetero UTR_3_PRIME
SBS Chr5 25951332 A-T Hetero INTERGENIC
SBS Chr6 1061584 C-A Hetero INTERGENIC
SBS Chr6 3477775 C-T Homo INTERGENIC
SBS Chr8 967540 C-T Homo INTERGENIC
SBS Chr10 5448497 G-T Homo INTERGENIC
SBS Chr10 8137101 G-A Hetero INTERGENIC
SBS Chr10 11057568 G-A Homo INTERGENIC
SBS Chr10 17926554 C-T Homo SYNONYMOUS_CODING

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1950275 1950287 12 OsKitaake02g029700
Deletion Chr1 5075900 5075910 10
Deletion Chr1 5306845 5306854 9
Deletion Chr1 5361428 5361430 2
Deletion Chr12 6662605 6662607 2
Deletion Chr9 7082453 7082460 7
Deletion Chr1 9040746 9040747 1
Deletion Chr4 9376036 9376044 8
Deletion Chr1 10116955 10116956 1
Deletion Chr11 19116531 19116533 2
Deletion Chr6 19239812 19239813 1
Deletion Chr11 20176755 20176756 1
Deletion Chr9 22443310 22443318 8
Deletion Chr5 23168708 23168711 3
Deletion Chr1 36838945 36838952 7 OsKitaake01g391900

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 17642860 17642863 2 OsKitaake02g176900
Insertion Chr3 25967012 25967015 2
Insertion Chr8 24469783 24469786 2
Insertion Chr11 9232325 9232328 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4236920	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g056600
SBS	Chr1	4236921	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g056600
SBS	Chr1	8947263	G-A	Homo	INTERGENIC
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	15477466	G-C	Hetero	INTERGENIC
SBS	Chr1	23733194	C-T	Hetero	INTERGENIC
SBS	Chr2	31406151	G-A	Hetero	INTERGENIC
SBS	Chr3	12908446	G-A	Hetero	INTERGENIC
SBS	Chr3	23087598	A-T	Homo	INTERGENIC
SBS	Chr4	2093649	G-A	Hetero	INTERGENIC
SBS	Chr4	4797683	C-A	Hetero	INTERGENIC
SBS	Chr4	13018531	A-T	Hetero	INTERGENIC
SBS	Chr4	21688820	T-C	Hetero	INTERGENIC
SBS	Chr5	874245	G-A	Hetero	INTRON
SBS	Chr5	1685358	A-T	Hetero	INTERGENIC
SBS	Chr5	14109770	C-T	Hetero	INTERGENIC
SBS	Chr5	16086399	T-C	Hetero	UTR_3_PRIME
SBS	Chr5	25951332	A-T	Hetero	INTERGENIC
SBS	Chr6	1061584	C-A	Hetero	INTERGENIC
SBS	Chr6	3477775	C-T	Homo	INTERGENIC
SBS	Chr8	967540	C-T	Homo	INTERGENIC
SBS	Chr10	5448497	G-T	Homo	INTERGENIC
SBS	Chr10	8137101	G-A	Hetero	INTERGENIC
SBS	Chr10	11057568	G-A	Homo	INTERGENIC
SBS	Chr10	17926554	C-T	Homo	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1950275	1950287	12	OsKitaake02g029700
Deletion	Chr1	5075900	5075910	10
Deletion	Chr1	5306845	5306854	9
Deletion	Chr1	5361428	5361430	2
Deletion	Chr12	6662605	6662607	2
Deletion	Chr9	7082453	7082460	7
Deletion	Chr1	9040746	9040747	1
Deletion	Chr4	9376036	9376044	8
Deletion	Chr1	10116955	10116956	1
Deletion	Chr11	19116531	19116533	2
Deletion	Chr6	19239812	19239813	1
Deletion	Chr11	20176755	20176756	1
Deletion	Chr9	22443310	22443318	8
Deletion	Chr5	23168708	23168711	3
Deletion	Chr1	36838945	36838952	7	OsKitaake01g391900

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes