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Mutant Information

Mutant Name	FN2760-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2760-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15299762 T-C Hetero UTR_3_PRIME
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr1 24723273 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g238600
SBS Chr1 34253552 A-T Hetero INTERGENIC
SBS Chr1 40000848 A-G Homo INTRON
SBS Chr1 43673074 G-T Homo INTERGENIC
SBS Chr2 23273188 G-A Hetero INTERGENIC
SBS Chr2 24609230 G-A Hetero INTERGENIC
SBS Chr3 5254628 A-T Hetero INTERGENIC
SBS Chr3 15477604 C-T Hetero INTERGENIC
SBS Chr3 25043074 T-A Hetero UTR_3_PRIME
SBS Chr3 26569121 G-T Hetero INTERGENIC
SBS Chr4 829499 T-G Hetero INTERGENIC
SBS Chr4 1880140 G-A Hetero INTERGENIC
SBS Chr4 17172413 T-C Hetero INTERGENIC
SBS Chr4 24852057 G-T Homo INTERGENIC
SBS Chr4 28457148 G-A Hetero INTERGENIC
SBS Chr5 8005956 T-G Hetero INTERGENIC
SBS Chr5 13190339 C-A Hetero INTERGENIC
SBS Chr5 19381137 G-A Hetero INTRON
SBS Chr5 20977567 G-A Hetero INTERGENIC
SBS Chr6 1967422 A-C Hetero INTRON
SBS Chr6 11887179 G-T Homo INTERGENIC
SBS Chr6 22859770 C-A Hetero INTERGENIC
SBS Chr7 7110756 G-C Hetero INTERGENIC
SBS Chr7 21943234 T-C Homo INTERGENIC
SBS Chr8 1152937 G-A Homo INTERGENIC
SBS Chr8 8568478 C-G Hetero INTERGENIC
SBS Chr8 9023869 C-T Homo INTERGENIC
SBS Chr8 9902523 C-T Hetero INTERGENIC
SBS Chr8 11028158 C-A Hetero INTERGENIC
SBS Chr8 13788966 G-A Hetero INTERGENIC
SBS Chr8 15115116 A-G Hetero INTERGENIC
SBS Chr9 887147 C-G Homo SYNONYMOUS_CODING
SBS Chr9 1810318 T-C Hetero INTERGENIC
SBS Chr9 5719183 A-G Homo INTERGENIC
SBS Chr9 14806317 A-G Hetero INTERGENIC
SBS Chr9 15765771 A-C Hetero INTERGENIC
SBS Chr9 15979938 C-T Hetero INTERGENIC
SBS Chr10 5306479 A-G Hetero INTERGENIC
SBS Chr10 15455197 G-A Hetero INTERGENIC
SBS Chr10 16162500 C-G Homo NON_SYNONYMOUS_CODING OsKitaake10g108300
SBS Chr11 18989439 G-T Homo INTERGENIC
SBS Chr11 19074954 C-T Homo UTR_3_PRIME
SBS Chr11 19715762 A-G Hetero INTERGENIC
SBS Chr11 25229860 T-G Hetero INTERGENIC
SBS Chr11 27038529 T-A Hetero INTERGENIC
SBS Chr11 28222670 G-T Hetero INTERGENIC
SBS Chr12 5051358 G-C Hetero INTERGENIC
SBS Chr12 8285147 G-A Hetero INTERGENIC
SBS Chr12 10745290 T-G Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 129894 129897 3
Deletion Chr1 1075182 1075198 16
Deletion Chr8 1153292 1153301 9
Deletion Chr9 10086044 10086045 1
Deletion Chr6 17276898 17276909 11
Deletion Chr5 18755197 18755222 25
Deletion Chr11 20550615 20550617 2
Deletion Chr1 23030924 23030930 6
Deletion Chr6 23489005 23489011 6
Deletion Chr8 28521189 28521201 12
Deletion Chr4 33674221 33674222 1

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42367388 42367391 2
Insertion Chr3 1726571 1726574 2
Insertion Chr3 22948605 22948608 2
Insertion Chr5 5964366 5964371 4
Insertion Chr10 10606822 10606825 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 5266273 5472909 OsKitaake12g066900
Inversion Chr12 5266278 5472908 OsKitaake12g066900

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 8796617 Chr4 14128989
Translocation Chr7 8800049 Chr4 14128979
Translocation Chr4 24563613 Chr3 12853528 OsKitaake03g172800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15299762	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr1	24723273	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g238600
SBS	Chr1	34253552	A-T	Hetero	INTERGENIC
SBS	Chr1	40000848	A-G	Homo	INTRON
SBS	Chr1	43673074	G-T	Homo	INTERGENIC
SBS	Chr2	23273188	G-A	Hetero	INTERGENIC
SBS	Chr2	24609230	G-A	Hetero	INTERGENIC
SBS	Chr3	5254628	A-T	Hetero	INTERGENIC
SBS	Chr3	15477604	C-T	Hetero	INTERGENIC
SBS	Chr3	25043074	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	26569121	G-T	Hetero	INTERGENIC
SBS	Chr4	829499	T-G	Hetero	INTERGENIC
SBS	Chr4	1880140	G-A	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Hetero	INTERGENIC
SBS	Chr4	24852057	G-T	Homo	INTERGENIC
SBS	Chr4	28457148	G-A	Hetero	INTERGENIC
SBS	Chr5	8005956	T-G	Hetero	INTERGENIC
SBS	Chr5	13190339	C-A	Hetero	INTERGENIC
SBS	Chr5	19381137	G-A	Hetero	INTRON
SBS	Chr5	20977567	G-A	Hetero	INTERGENIC
SBS	Chr6	1967422	A-C	Hetero	INTRON
SBS	Chr6	11887179	G-T	Homo	INTERGENIC
SBS	Chr6	22859770	C-A	Hetero	INTERGENIC
SBS	Chr7	7110756	G-C	Hetero	INTERGENIC
SBS	Chr7	21943234	T-C	Homo	INTERGENIC
SBS	Chr8	1152937	G-A	Homo	INTERGENIC
SBS	Chr8	8568478	C-G	Hetero	INTERGENIC
SBS	Chr8	9023869	C-T	Homo	INTERGENIC
SBS	Chr8	9902523	C-T	Hetero	INTERGENIC
SBS	Chr8	11028158	C-A	Hetero	INTERGENIC
SBS	Chr8	13788966	G-A	Hetero	INTERGENIC
SBS	Chr8	15115116	A-G	Hetero	INTERGENIC
SBS	Chr9	887147	C-G	Homo	SYNONYMOUS_CODING
SBS	Chr9	1810318	T-C	Hetero	INTERGENIC
SBS	Chr9	5719183	A-G	Homo	INTERGENIC
SBS	Chr9	14806317	A-G	Hetero	INTERGENIC
SBS	Chr9	15765771	A-C	Hetero	INTERGENIC
SBS	Chr9	15979938	C-T	Hetero	INTERGENIC
SBS	Chr10	5306479	A-G	Hetero	INTERGENIC
SBS	Chr10	15455197	G-A	Hetero	INTERGENIC
SBS	Chr10	16162500	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g108300
SBS	Chr11	18989439	G-T	Homo	INTERGENIC
SBS	Chr11	19074954	C-T	Homo	UTR_3_PRIME
SBS	Chr11	19715762	A-G	Hetero	INTERGENIC
SBS	Chr11	25229860	T-G	Hetero	INTERGENIC
SBS	Chr11	27038529	T-A	Hetero	INTERGENIC
SBS	Chr11	28222670	G-T	Hetero	INTERGENIC
SBS	Chr12	5051358	G-C	Hetero	INTERGENIC
SBS	Chr12	8285147	G-A	Hetero	INTERGENIC
SBS	Chr12	10745290	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	129894	129897	3
Deletion	Chr1	1075182	1075198	16
Deletion	Chr8	1153292	1153301	9
Deletion	Chr9	10086044	10086045	1
Deletion	Chr6	17276898	17276909	11
Deletion	Chr5	18755197	18755222	25
Deletion	Chr11	20550615	20550617	2
Deletion	Chr1	23030924	23030930	6
Deletion	Chr6	23489005	23489011	6
Deletion	Chr8	28521189	28521201	12
Deletion	Chr4	33674221	33674222	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5266273	5472909	OsKitaake12g066900
Inversion	Chr12	5266278	5472908	OsKitaake12g066900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes