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Mutant Information

Mutant Name	FN2765-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2765-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 84

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2561987	C-A	Hetero	INTERGENIC
SBS	Chr1	12103614	C-T	Hetero	INTERGENIC
SBS	Chr1	13097462	A-G	Hetero	INTERGENIC
SBS	Chr1	14293292	T-A	Homo	INTRON
SBS	Chr1	19650082	T-C	Hetero	INTERGENIC
SBS	Chr1	26237815	G-T	Hetero	INTERGENIC
SBS	Chr1	30082949	A-T	Hetero	UTR_3_PRIME
SBS	Chr1	32456328	T-G	Hetero	INTRON
SBS	Chr1	37217600	A-G	Hetero	INTERGENIC
SBS	Chr1	41156925	C-T	Hetero	INTERGENIC
SBS	Chr2	235551	G-T	Hetero	INTERGENIC
SBS	Chr2	4022090	A-T	Hetero	INTERGENIC
SBS	Chr2	6842102	A-T	Homo	INTRON
SBS	Chr2	16154122	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g166700
SBS	Chr2	17885241	C-A	Hetero	INTERGENIC
SBS	Chr2	31520825	C-T	Hetero	INTERGENIC
SBS	Chr3	361185	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	2836589	G-T	Hetero	INTERGENIC
SBS	Chr3	9430632	C-T	Homo	INTERGENIC
SBS	Chr3	19209444	C-A	Hetero	INTERGENIC
SBS	Chr3	19437349	C-T	Homo	INTERGENIC
SBS	Chr3	32490605	C-T	Homo	INTERGENIC
SBS	Chr3	33667451	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g362200
SBS	Chr4	13737413	C-T	Hetero	INTERGENIC
SBS	Chr4	18091972	G-T	Hetero	INTERGENIC
SBS	Chr4	19402518	G-A	Hetero	INTRON
SBS	Chr5	689192	T-A	Hetero	INTERGENIC
SBS	Chr5	903804	A-T	Homo	INTERGENIC
SBS	Chr5	6947361	C-A	Hetero	INTERGENIC
SBS	Chr5	13002826	G-A	Hetero	INTERGENIC
SBS	Chr5	16128429	G-A	Hetero	INTERGENIC
SBS	Chr5	21612260	G-T	Homo	INTERGENIC
SBS	Chr6	12192538	C-T	Hetero	INTERGENIC
SBS	Chr6	12290968	T-A	Hetero	INTERGENIC
SBS	Chr6	13057959	G-A	Hetero	INTERGENIC
SBS	Chr6	13257436	T-C	Hetero	INTERGENIC
SBS	Chr6	13849470	G-A	Hetero	INTERGENIC
SBS	Chr6	15613778	G-A	Hetero	INTERGENIC
SBS	Chr6	16506240	G-A	Hetero	INTERGENIC
SBS	Chr6	17206835	G-T	Hetero	INTERGENIC
SBS	Chr6	17606777	G-A	Hetero	INTERGENIC
SBS	Chr6	21909400	C-A	Hetero	INTERGENIC
SBS	Chr7	278705	G-T	Hetero	INTERGENIC
SBS	Chr7	8897355	C-T	Hetero	INTERGENIC
SBS	Chr7	9183690	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g095332
SBS	Chr7	14506690	G-T	Hetero	INTERGENIC
SBS	Chr7	15926938	G-T	Hetero	INTERGENIC
SBS	Chr7	21105398	G-C	Hetero	INTERGENIC
SBS	Chr8	6752627	C-T	Hetero	INTERGENIC
SBS	Chr8	9648522	T-C	Hetero	INTERGENIC
SBS	Chr8	9648555	G-T	Hetero	INTERGENIC
SBS	Chr8	19296320	T-G	Homo	INTERGENIC
SBS	Chr8	21696170	T-A	Hetero	INTERGENIC
SBS	Chr9	15753426	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g112100
SBS	Chr10	1921110	T-A	Hetero	INTERGENIC
SBS	Chr10	2354721	T-C	Hetero	INTRON
SBS	Chr10	9697651	G-A	Hetero	INTERGENIC
SBS	Chr10	10372355	G-T	Hetero	INTERGENIC
SBS	Chr10	14386578	A-T	Hetero	INTERGENIC
SBS	Chr10	20091352	G-A	Hetero	INTERGENIC
SBS	Chr11	916719	C-T	Hetero	INTERGENIC
SBS	Chr11	2707408	C-T	Hetero	INTERGENIC
SBS	Chr11	8246583	G-A	Hetero	INTERGENIC
SBS	Chr11	8519393	C-A	Hetero	INTERGENIC
SBS	Chr11	9574097	G-T	Hetero	INTERGENIC
SBS	Chr11	11523172	C-T	Hetero	INTERGENIC
SBS	Chr11	14043488	C-A	Homo	INTERGENIC
SBS	Chr11	24385621	G-A	Homo	INTERGENIC
SBS	Chr11	25096756	C-T	Homo	INTERGENIC
SBS	Chr11	26848374	T-C	Hetero	INTERGENIC
SBS	Chr11	27202076	A-G	Hetero	INTERGENIC
SBS	Chr12	383304	C-A	Hetero	INTRON
SBS	Chr12	7191120	C-T	Hetero	INTERGENIC
SBS	Chr12	10182772	C-A	Hetero	INTERGENIC
SBS	Chr12	10496740	A-G	Hetero	INTERGENIC
SBS	Chr12	10799375	C-T	Hetero	INTERGENIC
SBS	Chr12	12319075	G-C	Homo	INTERGENIC
SBS	Chr12	12478714	C-A	Hetero	INTERGENIC
SBS	Chr12	12948294	T-A	Hetero	INTERGENIC
SBS	Chr12	12948295	G-T	Hetero	INTERGENIC
SBS	Chr12	14221906	T-A	Homo	INTERGENIC
SBS	Chr12	17832067	G-T	Hetero	INTERGENIC
SBS	Chr12	21386906	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g167800
SBS	Chr12	24809463	G-A	Hetero	INTERGENIC

Deletions: 14

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	919020	919021	1
Deletion	Chr12	2596683	2596684	1
Deletion	Chr7	2878205	2878226	21
Deletion	Chr2	3297702	3297705	3
Deletion	Chr5	5942699	5942705	6
Deletion	Chr7	7383001	7520000	136999	11
Deletion	Chr1	8035956	8035957	1
Deletion	Chr11	8914001	9125000	210999	9
Deletion	Chr8	12408315	12408316	1
Deletion	Chr6	12882510	12882512	2
Deletion	Chr11	15701218	15701222	4
Deletion	Chr9	17141680	17141682	2
Deletion	Chr11	25725115	25725116	1
Deletion	Chr8	28789509	28789510	1

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr3	24874896	24874899	2
Insertion	Chr3	36350492	36350495	2
Insertion	Chr4	1616095	1616098	2
Insertion	Chr9	10007807	10007810	2

Inversions: 8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	7142876	7167065
Inversion	Chr7	7311383	7517266	OsKitaake07g083400
Inversion	Chr2	10079111	10181212
Inversion	Chr2	10079113	10181216
Inversion	Chr5	13644176	13889648	OsKitaake05g107800
Inversion	Chr5	13644188	13889656	OsKitaake05g107800
Inversion	Chr4	15723909	16705446	OsKitaake04g082100
Inversion	Chr4	15723928	16700132	OsKitaake04g082000

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	4168340	Chr5	24546271	2
Translocation	Chr8	4168567	Chr5	14518953	OsKitaake08g047300
Translocation	Chr5	14518949	Chr4	16699784	OsKitaake04g082000
Translocation	Chr5	24546272	Chr4	16699784	2
Translocation	Chr11	28405938	Chr7	10584834

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes