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Mutant Information

Mutant Name	FN2767-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2767-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2843524 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g036000
SBS Chr1 5167114 C-T Hetero INTERGENIC
SBS Chr1 6838943 C-T Hetero INTERGENIC
SBS Chr1 11306977 G-A Hetero INTERGENIC
SBS Chr1 12918127 G-A Hetero INTERGENIC
SBS Chr1 25982180 T-G Hetero INTERGENIC
SBS Chr1 28639563 C-A Hetero INTERGENIC
SBS Chr1 33237772 A-G Hetero INTERGENIC
SBS Chr2 6337030 A-G Hetero INTRON
SBS Chr2 11809852 G-A Hetero INTRON
SBS Chr2 17604129 A-G Hetero INTERGENIC
SBS Chr2 18004804 C-T Hetero INTERGENIC
SBS Chr2 29228114 C-T Hetero INTERGENIC
SBS Chr2 33012690 A-G Hetero INTERGENIC
SBS Chr3 2879943 A-T Hetero INTERGENIC
SBS Chr3 7026719 G-A Hetero INTERGENIC
SBS Chr3 7242338 C-A Hetero INTERGENIC
SBS Chr3 21765384 C-T Hetero INTERGENIC
SBS Chr3 36315677 A-T Hetero INTRON
SBS Chr3 36315678 C-T Hetero INTRON
SBS Chr3 36315680 A-T Hetero INTRON
SBS Chr3 36318183 A-C Hetero INTRON
SBS Chr3 37231928 C-T Hetero INTERGENIC
SBS Chr4 7348699 C-T Homo INTERGENIC
SBS Chr4 9637133 G-C Hetero INTERGENIC
SBS Chr4 14322176 G-A Hetero INTERGENIC
SBS Chr4 15936713 T-C Hetero UTR_5_PRIME
SBS Chr4 16323316 C-T Hetero INTERGENIC
SBS Chr4 16395353 G-T Hetero INTERGENIC
SBS Chr4 18782313 C-G Hetero INTERGENIC
SBS Chr4 20228683 T-A Hetero INTERGENIC
SBS Chr4 22254855 C-T Hetero INTERGENIC
SBS Chr5 12170535 C-T Homo INTERGENIC
SBS Chr5 16913046 C-T Hetero INTERGENIC
SBS Chr5 17488417 T-C Homo SYNONYMOUS_CODING
SBS Chr5 26565464 T-C Hetero INTERGENIC
SBS Chr6 3129711 C-T Homo INTERGENIC
SBS Chr6 5647401 T-G Hetero INTERGENIC
SBS Chr6 8811998 T-G Hetero INTERGENIC
SBS Chr6 9955996 C-T Hetero INTERGENIC
SBS Chr6 13335311 A-T Hetero INTERGENIC
SBS Chr7 2012681 G-A Hetero INTERGENIC
SBS Chr7 11582439 T-A Hetero INTERGENIC
SBS Chr7 17095939 G-T Hetero INTRON
SBS Chr8 7010745 C-T Homo INTERGENIC
SBS Chr8 27348532 C-G Hetero INTERGENIC
SBS Chr9 3065835 G-T Hetero INTERGENIC
SBS Chr9 6699756 G-A Hetero INTERGENIC
SBS Chr10 2059543 A-T Homo INTERGENIC
SBS Chr10 9219214 C-T Hetero INTERGENIC
SBS Chr10 21027931 A-C Hetero INTERGENIC
SBS Chr11 23549981 C-A Hetero INTERGENIC
SBS Chr11 26615917 G-T Hetero INTRON
SBS Chr12 12205639 G-T Hetero INTERGENIC
SBS Chr12 24820814 G-A Homo INTERGENIC
SBS Chr12 26181597 A-T Hetero INTERGENIC

Deletions: 21

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2921359 2921372 13
Deletion Chr8 3808493 3808509 16
Deletion Chr2 4007739 4007740 1
Deletion Chr11 4010419 4010428 9
Deletion Chr6 5230881 5230885 4
Deletion Chr11 6363256 6363257 1
Deletion Chr4 7603066 7603071 5
Deletion Chr8 9818898 9818899 1
Deletion Chr1 10767797 10767802 5
Deletion Chr7 12163871 12163880 9
Deletion Chr8 12526814 12526815 1
Deletion Chr3 12855697 12855703 6
Deletion Chr11 14717406 14717408 2
Deletion Chr1 15303464 15303475 11
Deletion Chr1 15752173 15752178 5
Deletion Chr2 17862352 17862361 9
Deletion Chr1 19170122 19170123 1
Deletion Chr11 20471987 20471990 3
Deletion Chr5 21295913 21295914 1
Deletion Chr1 32284013 32284014 1
Deletion Chr1 40236002 40236009 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 14663138 14663141 2
Insertion Chr3 23549922 23549925 2
Insertion Chr4 3803602 3803605 2
Insertion Chr5 8457318 8457320 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2810616 Chr1 16059622 OsKitaake11g039800
Translocation Chr11 2813053 Chr6 21122840 OsKitaake11g040000
Translocation Chr6 21077759 Chr1 15384350 OsKitaake06g187400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2843524	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g036000
SBS	Chr1	5167114	C-T	Hetero	INTERGENIC
SBS	Chr1	6838943	C-T	Hetero	INTERGENIC
SBS	Chr1	11306977	G-A	Hetero	INTERGENIC
SBS	Chr1	12918127	G-A	Hetero	INTERGENIC
SBS	Chr1	25982180	T-G	Hetero	INTERGENIC
SBS	Chr1	28639563	C-A	Hetero	INTERGENIC
SBS	Chr1	33237772	A-G	Hetero	INTERGENIC
SBS	Chr2	6337030	A-G	Hetero	INTRON
SBS	Chr2	11809852	G-A	Hetero	INTRON
SBS	Chr2	17604129	A-G	Hetero	INTERGENIC
SBS	Chr2	18004804	C-T	Hetero	INTERGENIC
SBS	Chr2	29228114	C-T	Hetero	INTERGENIC
SBS	Chr2	33012690	A-G	Hetero	INTERGENIC
SBS	Chr3	2879943	A-T	Hetero	INTERGENIC
SBS	Chr3	7026719	G-A	Hetero	INTERGENIC
SBS	Chr3	7242338	C-A	Hetero	INTERGENIC
SBS	Chr3	21765384	C-T	Hetero	INTERGENIC
SBS	Chr3	36315677	A-T	Hetero	INTRON
SBS	Chr3	36315678	C-T	Hetero	INTRON
SBS	Chr3	36315680	A-T	Hetero	INTRON
SBS	Chr3	36318183	A-C	Hetero	INTRON
SBS	Chr3	37231928	C-T	Hetero	INTERGENIC
SBS	Chr4	7348699	C-T	Homo	INTERGENIC
SBS	Chr4	9637133	G-C	Hetero	INTERGENIC
SBS	Chr4	14322176	G-A	Hetero	INTERGENIC
SBS	Chr4	15936713	T-C	Hetero	UTR_5_PRIME
SBS	Chr4	16323316	C-T	Hetero	INTERGENIC
SBS	Chr4	16395353	G-T	Hetero	INTERGENIC
SBS	Chr4	18782313	C-G	Hetero	INTERGENIC
SBS	Chr4	20228683	T-A	Hetero	INTERGENIC
SBS	Chr4	22254855	C-T	Hetero	INTERGENIC
SBS	Chr5	12170535	C-T	Homo	INTERGENIC
SBS	Chr5	16913046	C-T	Hetero	INTERGENIC
SBS	Chr5	17488417	T-C	Homo	SYNONYMOUS_CODING
SBS	Chr5	26565464	T-C	Hetero	INTERGENIC
SBS	Chr6	3129711	C-T	Homo	INTERGENIC
SBS	Chr6	5647401	T-G	Hetero	INTERGENIC
SBS	Chr6	8811998	T-G	Hetero	INTERGENIC
SBS	Chr6	9955996	C-T	Hetero	INTERGENIC
SBS	Chr6	13335311	A-T	Hetero	INTERGENIC
SBS	Chr7	2012681	G-A	Hetero	INTERGENIC
SBS	Chr7	11582439	T-A	Hetero	INTERGENIC
SBS	Chr7	17095939	G-T	Hetero	INTRON
SBS	Chr8	7010745	C-T	Homo	INTERGENIC
SBS	Chr8	27348532	C-G	Hetero	INTERGENIC
SBS	Chr9	3065835	G-T	Hetero	INTERGENIC
SBS	Chr9	6699756	G-A	Hetero	INTERGENIC
SBS	Chr10	2059543	A-T	Homo	INTERGENIC
SBS	Chr10	9219214	C-T	Hetero	INTERGENIC
SBS	Chr10	21027931	A-C	Hetero	INTERGENIC
SBS	Chr11	23549981	C-A	Hetero	INTERGENIC
SBS	Chr11	26615917	G-T	Hetero	INTRON
SBS	Chr12	12205639	G-T	Hetero	INTERGENIC
SBS	Chr12	24820814	G-A	Homo	INTERGENIC
SBS	Chr12	26181597	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2921359	2921372	13
Deletion	Chr8	3808493	3808509	16
Deletion	Chr2	4007739	4007740	1
Deletion	Chr11	4010419	4010428	9
Deletion	Chr6	5230881	5230885	4
Deletion	Chr11	6363256	6363257	1
Deletion	Chr4	7603066	7603071	5
Deletion	Chr8	9818898	9818899	1
Deletion	Chr1	10767797	10767802	5
Deletion	Chr7	12163871	12163880	9
Deletion	Chr8	12526814	12526815	1
Deletion	Chr3	12855697	12855703	6
Deletion	Chr11	14717406	14717408	2
Deletion	Chr1	15303464	15303475	11
Deletion	Chr1	15752173	15752178	5
Deletion	Chr2	17862352	17862361	9
Deletion	Chr1	19170122	19170123	1
Deletion	Chr11	20471987	20471990	3
Deletion	Chr5	21295913	21295914	1
Deletion	Chr1	32284013	32284014	1
Deletion	Chr1	40236002	40236009	7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2810616	Chr1	16059622	OsKitaake11g039800
Translocation	Chr11	2813053	Chr6	21122840	OsKitaake11g040000
Translocation	Chr6	21077759	Chr1	15384350	OsKitaake06g187400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes