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Mutant Information

Mutant Name	FN2768-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2768-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 368368 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g005200
SBS Chr1 9858059 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g125000
SBS Chr1 31488212 T-A Hetero INTERGENIC
SBS Chr1 32671384 C-G Hetero SYNONYMOUS_CODING
SBS Chr1 34962287 G-A Hetero INTERGENIC
SBS Chr1 41179330 G-A Hetero UTR_3_PRIME
SBS Chr1 41179331 G-A Hetero UTR_3_PRIME
SBS Chr1 43677774 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g485500
SBS Chr2 11028399 G-A Hetero INTERGENIC
SBS Chr2 24568763 G-A Hetero INTERGENIC
SBS Chr2 32080199 C-T Hetero INTERGENIC
SBS Chr2 32246077 T-A Hetero INTERGENIC
SBS Chr3 13288961 T-C Hetero INTRON
SBS Chr3 15550834 T-A Hetero INTERGENIC
SBS Chr3 22764508 G-T Hetero INTERGENIC
SBS Chr4 290542 G-A Hetero INTERGENIC
SBS Chr4 7666902 G-T Hetero INTERGENIC
SBS Chr5 813783 A-T Hetero INTERGENIC
SBS Chr5 6962143 A-T Homo INTERGENIC
SBS Chr5 9657729 T-A Hetero INTERGENIC
SBS Chr5 10325538 G-A Homo INTERGENIC
SBS Chr5 14588488 G-C Hetero INTERGENIC
SBS Chr5 26040422 T-C Hetero INTERGENIC
SBS Chr5 29676863 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g283750
SBS Chr7 7514500 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g083400
SBS Chr7 10162744 C-T Hetero INTERGENIC
SBS Chr7 13646055 C-A Hetero INTERGENIC
SBS Chr8 18351258 A-G Hetero INTERGENIC
SBS Chr8 18374339 G-T Hetero INTERGENIC
SBS Chr9 106381 G-A Hetero INTERGENIC
SBS Chr9 14552314 C-T Homo INTERGENIC
SBS Chr9 14552315 G-T Homo INTERGENIC
SBS Chr9 20614450 C-T Homo INTERGENIC
SBS Chr10 2065290 A-T Hetero INTERGENIC
SBS Chr10 5552606 C-T Hetero INTERGENIC
SBS Chr10 6470211 A-C Hetero INTERGENIC
SBS Chr10 15227483 C-T Hetero INTERGENIC
SBS Chr10 24038274 A-C Hetero INTERGENIC
SBS Chr11 9170432 T-A Hetero INTERGENIC
SBS Chr12 8211966 C-T Homo INTERGENIC
SBS Chr12 8561170 G-C Homo INTERGENIC
SBS Chr12 23580721 A-T Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 1490223 1490231 8
Deletion Chr10 7053548 7053550 2
Deletion Chr6 8324764 8324767 3
Deletion Chr4 10143385 10143386 1
Deletion Chr7 12042537 12042541 4
Deletion Chr1 12413953 12413968 15
Deletion Chr6 13841108 13841118 10
Deletion Chr8 15689873 15689877 4
Deletion Chr5 17263990 17263994 4
Deletion Chr6 17661135 17661137 2
Deletion Chr12 18653001 18682000 28999 5
Deletion Chr6 22841074 22841076 2
Deletion Chr12 25183203 25183210 7
Deletion Chr2 25786588 25786589 1
Deletion Chr3 32321626 32321627 1
Deletion Chr1 34184246 34184252 6
Deletion Chr4 35194967 35194973 6
Deletion Chr1 39078868 39078874 6

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5158556 5158558 1
Insertion Chr8 27257524 27257528 3
Insertion Chr11 16648160 16648163 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 4900513 5046445
Inversion Chr7 4900517 5046462
Inversion Chr1 9909684 10240362 OsKitaake01g125600
Inversion Chr1 9909702 10240383 OsKitaake01g125600
Inversion Chr2 10681976 11491093
Inversion Chr2 11491097 11849375

Translocations: 12

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1989539 Chr10 17428011 2
Translocation Chr12 6357077 Chr2 664487 OsKitaake02g009700
Translocation Chr12 10948110 Chr10 18152469 OsKitaake12g101400
Translocation Chr12 10956818 Chr10 18152470 OsKitaake12g101500
Translocation Chr4 14197516 Chr1 41170434 OsKitaake01g449400
Translocation Chr4 14198453 Chr1 41170461 OsKitaake01g449400
Translocation Chr10 17425696 Chr2 664500 OsKitaake02g009700
Translocation Chr12 18653498 Chr4 27577019 OsKitaake04g202200
Translocation Chr12 18664174 Chr1 39546427 2
Translocation Chr12 18679734 Chr1 39546434 OsKitaake01g426900
Translocation Chr8 23501338 Chr1 32018018
Translocation Chr8 23503333 Chr1 32018041

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	368368	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g005200
SBS	Chr1	9858059	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g125000
SBS	Chr1	31488212	T-A	Hetero	INTERGENIC
SBS	Chr1	32671384	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34962287	G-A	Hetero	INTERGENIC
SBS	Chr1	41179330	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	41179331	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	43677774	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g485500
SBS	Chr2	11028399	G-A	Hetero	INTERGENIC
SBS	Chr2	24568763	G-A	Hetero	INTERGENIC
SBS	Chr2	32080199	C-T	Hetero	INTERGENIC
SBS	Chr2	32246077	T-A	Hetero	INTERGENIC
SBS	Chr3	13288961	T-C	Hetero	INTRON
SBS	Chr3	15550834	T-A	Hetero	INTERGENIC
SBS	Chr3	22764508	G-T	Hetero	INTERGENIC
SBS	Chr4	290542	G-A	Hetero	INTERGENIC
SBS	Chr4	7666902	G-T	Hetero	INTERGENIC
SBS	Chr5	813783	A-T	Hetero	INTERGENIC
SBS	Chr5	6962143	A-T	Homo	INTERGENIC
SBS	Chr5	9657729	T-A	Hetero	INTERGENIC
SBS	Chr5	10325538	G-A	Homo	INTERGENIC
SBS	Chr5	14588488	G-C	Hetero	INTERGENIC
SBS	Chr5	26040422	T-C	Hetero	INTERGENIC
SBS	Chr5	29676863	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g283750
SBS	Chr7	7514500	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g083400
SBS	Chr7	10162744	C-T	Hetero	INTERGENIC
SBS	Chr7	13646055	C-A	Hetero	INTERGENIC
SBS	Chr8	18351258	A-G	Hetero	INTERGENIC
SBS	Chr8	18374339	G-T	Hetero	INTERGENIC
SBS	Chr9	106381	G-A	Hetero	INTERGENIC
SBS	Chr9	14552314	C-T	Homo	INTERGENIC
SBS	Chr9	14552315	G-T	Homo	INTERGENIC
SBS	Chr9	20614450	C-T	Homo	INTERGENIC
SBS	Chr10	2065290	A-T	Hetero	INTERGENIC
SBS	Chr10	5552606	C-T	Hetero	INTERGENIC
SBS	Chr10	6470211	A-C	Hetero	INTERGENIC
SBS	Chr10	15227483	C-T	Hetero	INTERGENIC
SBS	Chr10	24038274	A-C	Hetero	INTERGENIC
SBS	Chr11	9170432	T-A	Hetero	INTERGENIC
SBS	Chr12	8211966	C-T	Homo	INTERGENIC
SBS	Chr12	8561170	G-C	Homo	INTERGENIC
SBS	Chr12	23580721	A-T	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	1490223	1490231	8
Deletion	Chr10	7053548	7053550	2
Deletion	Chr6	8324764	8324767	3
Deletion	Chr4	10143385	10143386	1
Deletion	Chr7	12042537	12042541	4
Deletion	Chr1	12413953	12413968	15
Deletion	Chr6	13841108	13841118	10
Deletion	Chr8	15689873	15689877	4
Deletion	Chr5	17263990	17263994	4
Deletion	Chr6	17661135	17661137	2
Deletion	Chr12	18653001	18682000	28999	5
Deletion	Chr6	22841074	22841076	2
Deletion	Chr12	25183203	25183210	7
Deletion	Chr2	25786588	25786589	1
Deletion	Chr3	32321626	32321627	1
Deletion	Chr1	34184246	34184252	6
Deletion	Chr4	35194967	35194973	6
Deletion	Chr1	39078868	39078874	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4900513	5046445
Inversion	Chr7	4900517	5046462
Inversion	Chr1	9909684	10240362	OsKitaake01g125600
Inversion	Chr1	9909702	10240383	OsKitaake01g125600
Inversion	Chr2	10681976	11491093
Inversion	Chr2	11491097	11849375

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes