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Mutant Information

Mutant Name	FN2771-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2771-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 61

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3530502 G-A Hetero INTERGENIC
SBS Chr1 8601575 T-C Hetero INTERGENIC
SBS Chr1 11931769 G-C Hetero UTR_3_PRIME
SBS Chr1 25055227 C-G Hetero INTERGENIC
SBS Chr1 33517735 C-A Hetero INTERGENIC
SBS Chr1 34589907 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g363100
SBS Chr1 36697504 T-A Hetero INTERGENIC
SBS Chr2 15389816 T-A Hetero INTRON
SBS Chr2 17918209 C-T Hetero INTERGENIC
SBS Chr2 23611853 T-G Hetero INTERGENIC
SBS Chr2 30836387 T-A Hetero INTRON
SBS Chr3 10892117 A-G Hetero INTERGENIC
SBS Chr3 17586450 G-A Hetero INTERGENIC
SBS Chr3 23544848 G-A Homo INTERGENIC
SBS Chr3 35913238 G-T Homo INTERGENIC
SBS Chr4 1269964 T-C Hetero INTERGENIC
SBS Chr4 12910044 A-C Homo INTERGENIC
SBS Chr4 28502058 G-A Hetero INTRON
SBS Chr4 33318727 C-T Hetero INTERGENIC
SBS Chr4 33338058 T-C Hetero INTERGENIC
SBS Chr4 35067312 A-T Hetero INTERGENIC
SBS Chr5 23142588 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 23510166 G-A Hetero INTERGENIC
SBS Chr5 28826848 C-T Homo INTERGENIC
SBS Chr6 6787562 G-A Hetero INTERGENIC
SBS Chr6 7113905 T-A Hetero INTERGENIC
SBS Chr6 7781177 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g099400
SBS Chr6 12855864 C-T Homo INTRON
SBS Chr6 25364762 C-T Hetero INTERGENIC
SBS Chr7 7783946 T-A Hetero INTERGENIC
SBS Chr7 8752875 C-T Hetero INTERGENIC
SBS Chr7 8753292 G-A Homo INTERGENIC
SBS Chr7 12127794 G-A Homo INTERGENIC
SBS Chr7 18625661 G-T Homo INTERGENIC
SBS Chr7 23466679 G-A Homo INTERGENIC
SBS Chr7 27896611 T-C Hetero INTERGENIC
SBS Chr8 6019997 C-T Hetero INTRON
SBS Chr8 9306236 T-C Hetero INTERGENIC
SBS Chr8 11369970 G-A Hetero INTERGENIC
SBS Chr8 11614958 G-A Hetero INTERGENIC
SBS Chr8 16701375 T-C Hetero INTERGENIC
SBS Chr8 21262926 G-A Hetero INTERGENIC
SBS Chr8 22083652 A-T Hetero INTERGENIC
SBS Chr8 27862626 G-A Homo INTERGENIC
SBS Chr8 29148195 C-T Homo INTERGENIC
SBS Chr9 3399052 G-A Hetero INTERGENIC
SBS Chr9 5797937 G-A Hetero INTERGENIC
SBS Chr9 6112606 G-A Hetero INTERGENIC
SBS Chr10 4061238 C-T Hetero INTERGENIC
SBS Chr10 19485419 T-C Hetero INTERGENIC
SBS Chr11 3673201 C-T Hetero INTERGENIC
SBS Chr11 10164700 C-T Hetero INTERGENIC
SBS Chr11 15397080 G-A Hetero INTERGENIC
SBS Chr11 17258195 G-T Hetero INTERGENIC
SBS Chr11 21599986 T-C Hetero SYNONYMOUS_CODING
SBS Chr11 27145721 C-A Hetero INTERGENIC
SBS Chr12 5451207 T-A Homo INTERGENIC
SBS Chr12 9314138 T-G Hetero INTRON
SBS Chr12 15022116 T-C Hetero INTERGENIC
SBS Chr12 16068716 A-C Hetero INTRON
SBS Chr12 16809875 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 2656682 2656685 3
Deletion Chr6 3528578 3528585 7
Deletion Chr11 5048946 5048949 3
Deletion Chr7 5571430 5571434 4 OsKitaake07g067700
Deletion Chr6 5647988 5647989 1
Deletion Chr7 5868177 5868187 10
Deletion Chr5 7010297 7010298 1
Deletion Chr1 9125737 9125745 8
Deletion Chr5 9562914 9562927 13
Deletion Chr12 11365178 11365183 5
Deletion Chr8 13655001 13667000 11999
Deletion Chr8 13671001 13890000 218999 2
Deletion Chr6 13895018 13895025 7
Deletion Chr7 18422696 18422706 10
Deletion Chr4 18475389 18475390 1
Deletion Chr7 19501900 19501902 2
Deletion Chr3 19832465 19832479 14
Deletion Chr9 20774580 20774586 6
Deletion Chr1 23256001 23268000 11999 OsKitaake01g222400
Deletion Chr12 23409233 23409234 1
Deletion Chr2 25209238 25209240 2
Deletion Chr2 25696461 25696463 2 OsKitaake02g254100
Deletion Chr6 27918001 27934000 15999 OsKitaake06g253400
Deletion Chr4 28572933 28572934 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 9957278 9957283 4
Insertion Chr6 9662269 9662272 2
Insertion Chr8 1227183 1227186 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16201109 17014996
Inversion Chr8 20417554 21324441
Inversion Chr8 20417562 21324454

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3530502	G-A	Hetero	INTERGENIC
SBS	Chr1	8601575	T-C	Hetero	INTERGENIC
SBS	Chr1	11931769	G-C	Hetero	UTR_3_PRIME
SBS	Chr1	25055227	C-G	Hetero	INTERGENIC
SBS	Chr1	33517735	C-A	Hetero	INTERGENIC
SBS	Chr1	34589907	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g363100
SBS	Chr1	36697504	T-A	Hetero	INTERGENIC
SBS	Chr2	15389816	T-A	Hetero	INTRON
SBS	Chr2	17918209	C-T	Hetero	INTERGENIC
SBS	Chr2	23611853	T-G	Hetero	INTERGENIC
SBS	Chr2	30836387	T-A	Hetero	INTRON
SBS	Chr3	10892117	A-G	Hetero	INTERGENIC
SBS	Chr3	17586450	G-A	Hetero	INTERGENIC
SBS	Chr3	23544848	G-A	Homo	INTERGENIC
SBS	Chr3	35913238	G-T	Homo	INTERGENIC
SBS	Chr4	1269964	T-C	Hetero	INTERGENIC
SBS	Chr4	12910044	A-C	Homo	INTERGENIC
SBS	Chr4	28502058	G-A	Hetero	INTRON
SBS	Chr4	33318727	C-T	Hetero	INTERGENIC
SBS	Chr4	33338058	T-C	Hetero	INTERGENIC
SBS	Chr4	35067312	A-T	Hetero	INTERGENIC
SBS	Chr5	23142588	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	23510166	G-A	Hetero	INTERGENIC
SBS	Chr5	28826848	C-T	Homo	INTERGENIC
SBS	Chr6	6787562	G-A	Hetero	INTERGENIC
SBS	Chr6	7113905	T-A	Hetero	INTERGENIC
SBS	Chr6	7781177	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g099400
SBS	Chr6	12855864	C-T	Homo	INTRON
SBS	Chr6	25364762	C-T	Hetero	INTERGENIC
SBS	Chr7	7783946	T-A	Hetero	INTERGENIC
SBS	Chr7	8752875	C-T	Hetero	INTERGENIC
SBS	Chr7	8753292	G-A	Homo	INTERGENIC
SBS	Chr7	12127794	G-A	Homo	INTERGENIC
SBS	Chr7	18625661	G-T	Homo	INTERGENIC
SBS	Chr7	23466679	G-A	Homo	INTERGENIC
SBS	Chr7	27896611	T-C	Hetero	INTERGENIC
SBS	Chr8	6019997	C-T	Hetero	INTRON
SBS	Chr8	9306236	T-C	Hetero	INTERGENIC
SBS	Chr8	11369970	G-A	Hetero	INTERGENIC
SBS	Chr8	11614958	G-A	Hetero	INTERGENIC
SBS	Chr8	16701375	T-C	Hetero	INTERGENIC
SBS	Chr8	21262926	G-A	Hetero	INTERGENIC
SBS	Chr8	22083652	A-T	Hetero	INTERGENIC
SBS	Chr8	27862626	G-A	Homo	INTERGENIC
SBS	Chr8	29148195	C-T	Homo	INTERGENIC
SBS	Chr9	3399052	G-A	Hetero	INTERGENIC
SBS	Chr9	5797937	G-A	Hetero	INTERGENIC
SBS	Chr9	6112606	G-A	Hetero	INTERGENIC
SBS	Chr10	4061238	C-T	Hetero	INTERGENIC
SBS	Chr10	19485419	T-C	Hetero	INTERGENIC
SBS	Chr11	3673201	C-T	Hetero	INTERGENIC
SBS	Chr11	10164700	C-T	Hetero	INTERGENIC
SBS	Chr11	15397080	G-A	Hetero	INTERGENIC
SBS	Chr11	17258195	G-T	Hetero	INTERGENIC
SBS	Chr11	21599986	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr11	27145721	C-A	Hetero	INTERGENIC
SBS	Chr12	5451207	T-A	Homo	INTERGENIC
SBS	Chr12	9314138	T-G	Hetero	INTRON
SBS	Chr12	15022116	T-C	Hetero	INTERGENIC
SBS	Chr12	16068716	A-C	Hetero	INTRON
SBS	Chr12	16809875	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	2656682	2656685	3
Deletion	Chr6	3528578	3528585	7
Deletion	Chr11	5048946	5048949	3
Deletion	Chr7	5571430	5571434	4	OsKitaake07g067700
Deletion	Chr6	5647988	5647989	1
Deletion	Chr7	5868177	5868187	10
Deletion	Chr5	7010297	7010298	1
Deletion	Chr1	9125737	9125745	8
Deletion	Chr5	9562914	9562927	13
Deletion	Chr12	11365178	11365183	5
Deletion	Chr8	13655001	13667000	11999
Deletion	Chr8	13671001	13890000	218999	2
Deletion	Chr6	13895018	13895025	7
Deletion	Chr7	18422696	18422706	10
Deletion	Chr4	18475389	18475390	1
Deletion	Chr7	19501900	19501902	2
Deletion	Chr3	19832465	19832479	14
Deletion	Chr9	20774580	20774586	6
Deletion	Chr1	23256001	23268000	11999	OsKitaake01g222400
Deletion	Chr12	23409233	23409234	1
Deletion	Chr2	25209238	25209240	2
Deletion	Chr2	25696461	25696463	2	OsKitaake02g254100
Deletion	Chr6	27918001	27934000	15999	OsKitaake06g253400
Deletion	Chr4	28572933	28572934	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16201109	17014996
Inversion	Chr8	20417554	21324441
Inversion	Chr8	20417562	21324454

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes