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Mutant Information

Mutant Name	FN2774-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2774-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4059904 C-T Hetero INTERGENIC
SBS Chr1 9825748 G-C Hetero INTRON
SBS Chr1 15802170 T-A Hetero INTERGENIC
SBS Chr1 18750339 G-C Hetero INTERGENIC
SBS Chr1 23458400 A-G Hetero UTR_3_PRIME
SBS Chr1 23708105 A-G Hetero INTERGENIC
SBS Chr1 26615524 T-C Homo INTRON
SBS Chr1 27568361 A-G Hetero INTERGENIC
SBS Chr1 32970335 G-T Hetero SYNONYMOUS_CODING
SBS Chr1 34040119 C-A Hetero INTERGENIC
SBS Chr1 44249628 G-A Hetero INTERGENIC
SBS Chr2 3193769 A-C Hetero INTERGENIC
SBS Chr2 13640616 C-T Hetero INTERGENIC
SBS Chr2 22957558 C-A Hetero INTERGENIC
SBS Chr2 23100628 A-G Hetero INTERGENIC
SBS Chr2 28251113 C-T Hetero INTERGENIC
SBS Chr3 23326752 A-T Hetero UTR_5_PRIME
SBS Chr3 27715360 C-G Hetero INTERGENIC
SBS Chr4 9409998 G-C Homo INTERGENIC
SBS Chr4 21282452 G-A Hetero INTERGENIC
SBS Chr4 29206696 C-T Hetero INTRON
SBS Chr4 36349821 T-C Hetero INTRON
SBS Chr5 601116 A-G Hetero SYNONYMOUS_CODING
SBS Chr5 7647252 C-T Hetero INTERGENIC
SBS Chr5 16148119 G-A Hetero INTRON
SBS Chr5 28864430 G-T Hetero INTERGENIC
SBS Chr6 2082877 T-A Hetero INTRON
SBS Chr6 14490601 C-A Hetero INTERGENIC
SBS Chr6 19547434 G-A Hetero INTERGENIC
SBS Chr7 5762790 C-A Hetero INTRON
SBS Chr7 20616064 C-T Hetero INTERGENIC
SBS Chr7 20616065 G-C Hetero INTERGENIC
SBS Chr7 24175035 C-T Hetero INTERGENIC
SBS Chr7 29206695 G-A Hetero INTERGENIC
SBS Chr8 2246097 C-T Hetero INTERGENIC
SBS Chr8 10657634 A-G Hetero INTRON
SBS Chr8 14720763 C-T Hetero INTERGENIC
SBS Chr8 16049809 C-T Hetero INTERGENIC
SBS Chr8 18223382 A-G Homo INTERGENIC
SBS Chr8 24912422 T-C Homo INTERGENIC
SBS Chr8 25066761 T-A Hetero INTERGENIC
SBS Chr8 26258599 T-C Homo NON_SYNONYMOUS_CODING OsKitaake08g209900
SBS Chr9 943741 T-G Hetero INTERGENIC
SBS Chr9 11610102 A-T Homo NON_SYNONYMOUS_CODING OsKitaake09g073600
SBS Chr9 20711361 G-A Hetero INTERGENIC
SBS Chr10 13855060 A-T Hetero INTRON
SBS Chr11 2343710 C-T Hetero INTERGENIC
SBS Chr11 23925411 C-T Hetero INTERGENIC
SBS Chr12 1231649 T-A Homo UTR_5_PRIME
SBS Chr12 4598293 T-C Homo INTERGENIC
SBS Chr12 25845511 T-G Homo INTERGENIC

Deletions: 26

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 365233 365238 5
Deletion Chr3 1960374 1960378 4
Deletion Chr1 5032441 5032451 10
Deletion Chr7 5344907 5344921 14
Deletion Chr5 6563660 6563661 1
Deletion Chr6 7178420 7178430 10 OsKitaake06g092600
Deletion Chr11 10140556 10140560 4
Deletion Chr5 10922261 10922262 1
Deletion Chr4 12138759 12138772 13
Deletion Chr8 14486537 14486542 5
Deletion Chr2 14524559 14524560 1
Deletion Chr2 15564482 15564485 3
Deletion Chr12 17525001 17553000 27999 OsKitaake12g129300
Deletion Chr8 17546857 17546867 10
Deletion Chr12 18098368 18098374 6
Deletion Chr12 18677174 18677178 4 OsKitaake12g137800
Deletion Chr10 18950166 18950178 12 OsKitaake10g135200
Deletion Chr1 22091964 22091965 1
Deletion Chr5 22555021 22555025 4
Deletion Chr3 23366441 23366442 1
Deletion Chr11 24080550 24080551 1
Deletion Chr11 27463001 27621000 157999 12
Deletion Chr11 28602869 28602872 3
Deletion Chr2 29448541 29448551 10
Deletion Chr11 29486042 29486055 13 OsKitaake11g242600
Deletion Chr4 34876444 34876457 13

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 27826306 27826308 1
Insertion Chr10 22567317 22567320 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 6359035 Chr10 8535659 OsKitaake11g075900
Translocation Chr10 7726329 Chr4 23444566 OsKitaake04g145400
Translocation Chr10 7730825 Chr4 23444615 OsKitaake04g145400
Translocation Chr12 9484473 Chr10 8535685 OsKitaake12g091800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4059904	C-T	Hetero	INTERGENIC
SBS	Chr1	9825748	G-C	Hetero	INTRON
SBS	Chr1	15802170	T-A	Hetero	INTERGENIC
SBS	Chr1	18750339	G-C	Hetero	INTERGENIC
SBS	Chr1	23458400	A-G	Hetero	UTR_3_PRIME
SBS	Chr1	23708105	A-G	Hetero	INTERGENIC
SBS	Chr1	26615524	T-C	Homo	INTRON
SBS	Chr1	27568361	A-G	Hetero	INTERGENIC
SBS	Chr1	32970335	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	34040119	C-A	Hetero	INTERGENIC
SBS	Chr1	44249628	G-A	Hetero	INTERGENIC
SBS	Chr2	3193769	A-C	Hetero	INTERGENIC
SBS	Chr2	13640616	C-T	Hetero	INTERGENIC
SBS	Chr2	22957558	C-A	Hetero	INTERGENIC
SBS	Chr2	23100628	A-G	Hetero	INTERGENIC
SBS	Chr2	28251113	C-T	Hetero	INTERGENIC
SBS	Chr3	23326752	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	27715360	C-G	Hetero	INTERGENIC
SBS	Chr4	9409998	G-C	Homo	INTERGENIC
SBS	Chr4	21282452	G-A	Hetero	INTERGENIC
SBS	Chr4	29206696	C-T	Hetero	INTRON
SBS	Chr4	36349821	T-C	Hetero	INTRON
SBS	Chr5	601116	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr5	7647252	C-T	Hetero	INTERGENIC
SBS	Chr5	16148119	G-A	Hetero	INTRON
SBS	Chr5	28864430	G-T	Hetero	INTERGENIC
SBS	Chr6	2082877	T-A	Hetero	INTRON
SBS	Chr6	14490601	C-A	Hetero	INTERGENIC
SBS	Chr6	19547434	G-A	Hetero	INTERGENIC
SBS	Chr7	5762790	C-A	Hetero	INTRON
SBS	Chr7	20616064	C-T	Hetero	INTERGENIC
SBS	Chr7	20616065	G-C	Hetero	INTERGENIC
SBS	Chr7	24175035	C-T	Hetero	INTERGENIC
SBS	Chr7	29206695	G-A	Hetero	INTERGENIC
SBS	Chr8	2246097	C-T	Hetero	INTERGENIC
SBS	Chr8	10657634	A-G	Hetero	INTRON
SBS	Chr8	14720763	C-T	Hetero	INTERGENIC
SBS	Chr8	16049809	C-T	Hetero	INTERGENIC
SBS	Chr8	18223382	A-G	Homo	INTERGENIC
SBS	Chr8	24912422	T-C	Homo	INTERGENIC
SBS	Chr8	25066761	T-A	Hetero	INTERGENIC
SBS	Chr8	26258599	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g209900
SBS	Chr9	943741	T-G	Hetero	INTERGENIC
SBS	Chr9	11610102	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g073600
SBS	Chr9	20711361	G-A	Hetero	INTERGENIC
SBS	Chr10	13855060	A-T	Hetero	INTRON
SBS	Chr11	2343710	C-T	Hetero	INTERGENIC
SBS	Chr11	23925411	C-T	Hetero	INTERGENIC
SBS	Chr12	1231649	T-A	Homo	UTR_5_PRIME
SBS	Chr12	4598293	T-C	Homo	INTERGENIC
SBS	Chr12	25845511	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	365233	365238	5
Deletion	Chr3	1960374	1960378	4
Deletion	Chr1	5032441	5032451	10
Deletion	Chr7	5344907	5344921	14
Deletion	Chr5	6563660	6563661	1
Deletion	Chr6	7178420	7178430	10	OsKitaake06g092600
Deletion	Chr11	10140556	10140560	4
Deletion	Chr5	10922261	10922262	1
Deletion	Chr4	12138759	12138772	13
Deletion	Chr8	14486537	14486542	5
Deletion	Chr2	14524559	14524560	1
Deletion	Chr2	15564482	15564485	3
Deletion	Chr12	17525001	17553000	27999	OsKitaake12g129300
Deletion	Chr8	17546857	17546867	10
Deletion	Chr12	18098368	18098374	6
Deletion	Chr12	18677174	18677178	4	OsKitaake12g137800
Deletion	Chr10	18950166	18950178	12	OsKitaake10g135200
Deletion	Chr1	22091964	22091965	1
Deletion	Chr5	22555021	22555025	4
Deletion	Chr3	23366441	23366442	1
Deletion	Chr11	24080550	24080551	1
Deletion	Chr11	27463001	27621000	157999	12
Deletion	Chr11	28602869	28602872	3
Deletion	Chr2	29448541	29448551	10
Deletion	Chr11	29486042	29486055	13	OsKitaake11g242600
Deletion	Chr4	34876444	34876457	13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6359035	Chr10	8535659	OsKitaake11g075900
Translocation	Chr10	7726329	Chr4	23444566	OsKitaake04g145400
Translocation	Chr10	7730825	Chr4	23444615	OsKitaake04g145400
Translocation	Chr12	9484473	Chr10	8535685	OsKitaake12g091800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes