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Mutant Information

Mutant Name	FN2779-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2779-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7470020 T-C Homo INTRON
SBS Chr1 15565666 G-T Hetero INTERGENIC
SBS Chr1 21094004 G-T Homo INTERGENIC
SBS Chr1 24736306 A-G Hetero INTERGENIC
SBS Chr1 30993487 G-A Homo STOP_GAINED OsKitaake01g308800
SBS Chr1 33550469 T-G Hetero INTERGENIC
SBS Chr1 36988278 G-A Hetero INTERGENIC
SBS Chr1 37128776 C-T Hetero INTERGENIC
SBS Chr2 2194329 G-A Hetero INTERGENIC
SBS Chr2 7671425 G-A Hetero INTERGENIC
SBS Chr2 14103731 T-C Hetero INTERGENIC
SBS Chr2 27732815 G-C Hetero INTERGENIC
SBS Chr3 1052064 T-C Hetero UTR_3_PRIME
SBS Chr3 9571294 G-T Hetero INTERGENIC
SBS Chr3 14999419 C-T Hetero INTERGENIC
SBS Chr3 22572857 C-A Hetero INTERGENIC
SBS Chr4 216639 C-T Hetero INTERGENIC
SBS Chr4 3391120 G-C Hetero INTERGENIC
SBS Chr4 5388255 T-G Hetero INTERGENIC
SBS Chr4 6521972 A-T Hetero INTERGENIC
SBS Chr4 6619594 G-A Hetero INTERGENIC
SBS Chr4 6825705 C-T Hetero INTERGENIC
SBS Chr4 11264777 G-T Hetero INTERGENIC
SBS Chr4 16986238 T-C Hetero INTERGENIC
SBS Chr4 17593288 G-A Hetero INTERGENIC
SBS Chr4 23738037 T-A Homo INTERGENIC
SBS Chr5 4702475 G-A Hetero INTERGENIC
SBS Chr5 9504010 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g087300
SBS Chr5 10252892 C-T Hetero INTERGENIC
SBS Chr5 27408751 C-T Hetero INTERGENIC
SBS Chr5 30253527 G-A Hetero INTERGENIC
SBS Chr6 12765597 A-C Homo INTERGENIC
SBS Chr7 19564895 G-A Hetero INTERGENIC
SBS Chr8 329490 T-C Hetero INTERGENIC
SBS Chr8 2501486 G-A Hetero INTERGENIC
SBS Chr8 13166795 A-G Homo INTERGENIC
SBS Chr8 15957350 G-A Homo INTERGENIC
SBS Chr9 742772 G-A Hetero INTERGENIC
SBS Chr9 4626730 T-A Hetero INTERGENIC
SBS Chr9 5660872 T-A Hetero INTERGENIC
SBS Chr9 6756223 A-T Homo INTERGENIC
SBS Chr9 7341228 G-A Homo INTERGENIC
SBS Chr9 13092125 C-T Hetero INTRON
SBS Chr9 14026279 A-T Hetero INTRON
SBS Chr9 14026280 G-T Hetero INTRON
SBS Chr10 1876561 G-C Hetero INTRON
SBS Chr10 6901007 G-A Hetero INTERGENIC
SBS Chr10 9009874 A-G Hetero INTERGENIC
SBS Chr10 12859598 G-A Hetero INTERGENIC
SBS Chr11 6108635 C-A Hetero INTERGENIC
SBS Chr11 7594536 G-A Hetero INTERGENIC
SBS Chr11 14565974 G-A Hetero INTERGENIC
SBS Chr11 26134279 T-C Hetero INTERGENIC
SBS Chr11 26985802 G-A Hetero INTERGENIC
SBS Chr12 364363 T-A Hetero INTRON
SBS Chr12 5953612 G-A Hetero INTERGENIC
SBS Chr12 6001928 T-A Hetero INTERGENIC
SBS Chr12 18346741 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1466481 1466482 1
Deletion Chr9 2320001 2421000 100999 7
Deletion Chr7 5783624 5783626 2
Deletion Chr5 6989114 6989117 3
Deletion Chr11 9602187 9602193 6
Deletion Chr10 11331254 11331256 2
Deletion Chr9 11725633 11725635 2
Deletion Chr9 13016736 13016740 4
Deletion Chr1 14342707 14342712 5
Deletion Chr9 14518560 14518561 1
Deletion Chr1 18209771 18209772 1
Deletion Chr5 19289839 19289840 1 OsKitaake05g151400
Deletion Chr4 20500913 20500923 10
Deletion Chr4 22867988 22867989 1
Deletion Chr12 25341476 25341488 12
Deletion Chr2 34509606 34509612 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 11619249 11619252 2
Insertion Chr3 34553148 34553151 2
Insertion Chr4 28242465 28242468 2
Insertion Chr9 6259629 6259632 2
Insertion Chr11 7060697 7060700 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 1735409 2320926
Inversion Chr9 1735950 2418308

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7470020	T-C	Homo	INTRON
SBS	Chr1	15565666	G-T	Hetero	INTERGENIC
SBS	Chr1	21094004	G-T	Homo	INTERGENIC
SBS	Chr1	24736306	A-G	Hetero	INTERGENIC
SBS	Chr1	30993487	G-A	Homo	STOP_GAINED	OsKitaake01g308800
SBS	Chr1	33550469	T-G	Hetero	INTERGENIC
SBS	Chr1	36988278	G-A	Hetero	INTERGENIC
SBS	Chr1	37128776	C-T	Hetero	INTERGENIC
SBS	Chr2	2194329	G-A	Hetero	INTERGENIC
SBS	Chr2	7671425	G-A	Hetero	INTERGENIC
SBS	Chr2	14103731	T-C	Hetero	INTERGENIC
SBS	Chr2	27732815	G-C	Hetero	INTERGENIC
SBS	Chr3	1052064	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	9571294	G-T	Hetero	INTERGENIC
SBS	Chr3	14999419	C-T	Hetero	INTERGENIC
SBS	Chr3	22572857	C-A	Hetero	INTERGENIC
SBS	Chr4	216639	C-T	Hetero	INTERGENIC
SBS	Chr4	3391120	G-C	Hetero	INTERGENIC
SBS	Chr4	5388255	T-G	Hetero	INTERGENIC
SBS	Chr4	6521972	A-T	Hetero	INTERGENIC
SBS	Chr4	6619594	G-A	Hetero	INTERGENIC
SBS	Chr4	6825705	C-T	Hetero	INTERGENIC
SBS	Chr4	11264777	G-T	Hetero	INTERGENIC
SBS	Chr4	16986238	T-C	Hetero	INTERGENIC
SBS	Chr4	17593288	G-A	Hetero	INTERGENIC
SBS	Chr4	23738037	T-A	Homo	INTERGENIC
SBS	Chr5	4702475	G-A	Hetero	INTERGENIC
SBS	Chr5	9504010	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g087300
SBS	Chr5	10252892	C-T	Hetero	INTERGENIC
SBS	Chr5	27408751	C-T	Hetero	INTERGENIC
SBS	Chr5	30253527	G-A	Hetero	INTERGENIC
SBS	Chr6	12765597	A-C	Homo	INTERGENIC
SBS	Chr7	19564895	G-A	Hetero	INTERGENIC
SBS	Chr8	329490	T-C	Hetero	INTERGENIC
SBS	Chr8	2501486	G-A	Hetero	INTERGENIC
SBS	Chr8	13166795	A-G	Homo	INTERGENIC
SBS	Chr8	15957350	G-A	Homo	INTERGENIC
SBS	Chr9	742772	G-A	Hetero	INTERGENIC
SBS	Chr9	4626730	T-A	Hetero	INTERGENIC
SBS	Chr9	5660872	T-A	Hetero	INTERGENIC
SBS	Chr9	6756223	A-T	Homo	INTERGENIC
SBS	Chr9	7341228	G-A	Homo	INTERGENIC
SBS	Chr9	13092125	C-T	Hetero	INTRON
SBS	Chr9	14026279	A-T	Hetero	INTRON
SBS	Chr9	14026280	G-T	Hetero	INTRON
SBS	Chr10	1876561	G-C	Hetero	INTRON
SBS	Chr10	6901007	G-A	Hetero	INTERGENIC
SBS	Chr10	9009874	A-G	Hetero	INTERGENIC
SBS	Chr10	12859598	G-A	Hetero	INTERGENIC
SBS	Chr11	6108635	C-A	Hetero	INTERGENIC
SBS	Chr11	7594536	G-A	Hetero	INTERGENIC
SBS	Chr11	14565974	G-A	Hetero	INTERGENIC
SBS	Chr11	26134279	T-C	Hetero	INTERGENIC
SBS	Chr11	26985802	G-A	Hetero	INTERGENIC
SBS	Chr12	364363	T-A	Hetero	INTRON
SBS	Chr12	5953612	G-A	Hetero	INTERGENIC
SBS	Chr12	6001928	T-A	Hetero	INTERGENIC
SBS	Chr12	18346741	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1466481	1466482	1
Deletion	Chr9	2320001	2421000	100999	7
Deletion	Chr7	5783624	5783626	2
Deletion	Chr5	6989114	6989117	3
Deletion	Chr11	9602187	9602193	6
Deletion	Chr10	11331254	11331256	2
Deletion	Chr9	11725633	11725635	2
Deletion	Chr9	13016736	13016740	4
Deletion	Chr1	14342707	14342712	5
Deletion	Chr9	14518560	14518561	1
Deletion	Chr1	18209771	18209772	1
Deletion	Chr5	19289839	19289840	1	OsKitaake05g151400
Deletion	Chr4	20500913	20500923	10
Deletion	Chr4	22867988	22867989	1
Deletion	Chr12	25341476	25341488	12
Deletion	Chr2	34509606	34509612	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1735409	2320926
Inversion	Chr9	1735950	2418308

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes