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Mutant Information

Mutant Name	FN2780-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2780-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 74

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7133160 G-A Hetero INTERGENIC
SBS Chr1 8596903 G-A Hetero INTRON
SBS Chr1 26074015 A-G Homo INTERGENIC
SBS Chr1 35145071 T-C Homo INTERGENIC
SBS Chr1 37743608 G-A Hetero INTERGENIC
SBS Chr2 8842274 A-G Hetero INTERGENIC
SBS Chr2 13232028 G-A Hetero INTERGENIC
SBS Chr2 14933625 A-T Hetero INTERGENIC
SBS Chr2 15195006 C-G Hetero INTERGENIC
SBS Chr2 16221871 T-C Hetero INTERGENIC
SBS Chr2 21719140 C-A Hetero INTERGENIC
SBS Chr2 23981876 A-G Hetero INTERGENIC
SBS Chr2 24966662 T-C Hetero INTERGENIC
SBS Chr3 2436916 A-T Hetero INTERGENIC
SBS Chr3 2657805 A-G Hetero INTERGENIC
SBS Chr3 3945574 C-T Hetero INTERGENIC
SBS Chr3 19619435 C-T Hetero INTRON
SBS Chr3 29471085 T-C Hetero INTERGENIC
SBS Chr3 29584209 C-T Hetero INTERGENIC
SBS Chr3 32441976 A-C Hetero INTERGENIC
SBS Chr3 33798609 C-T Hetero INTERGENIC
SBS Chr4 18452733 G-C Hetero INTERGENIC
SBS Chr4 28013611 C-T Homo INTERGENIC
SBS Chr4 35275523 C-T Homo NON_SYNONYMOUS_CODING OsKitaake04g297900
SBS Chr5 14485034 T-C Hetero INTERGENIC
SBS Chr5 21221005 C-T Hetero INTERGENIC
SBS Chr5 27355270 G-A Hetero UTR_5_PRIME
SBS Chr6 4236511 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g058800
SBS Chr6 4352642 G-T Hetero INTERGENIC
SBS Chr6 4857648 C-A Hetero INTERGENIC
SBS Chr6 4857649 G-T Hetero INTERGENIC
SBS Chr6 9745338 G-T Hetero INTERGENIC
SBS Chr6 26637629 C-T Hetero INTERGENIC
SBS Chr7 10318146 G-T Hetero INTERGENIC
SBS Chr7 10383883 G-A Hetero INTERGENIC
SBS Chr7 14298704 C-T Hetero INTERGENIC
SBS Chr7 19865424 C-T Hetero INTERGENIC
SBS Chr7 20307308 C-A Hetero INTERGENIC
SBS Chr7 26976974 C-A Hetero UTR_3_PRIME
SBS Chr8 10928936 T-C Hetero INTERGENIC
SBS Chr8 14134671 A-T Hetero INTERGENIC
SBS Chr8 15284496 G-A Hetero INTERGENIC
SBS Chr8 18447756 T-A Homo INTRON
SBS Chr8 22315972 C-T Hetero INTERGENIC
SBS Chr8 28302249 A-T Hetero INTERGENIC
SBS Chr9 8588008 C-T Hetero INTRON
SBS Chr9 21766491 A-T Homo NON_SYNONYMOUS_CODING OsKitaake09g192500
SBS Chr9 21766492 C-T Homo STOP_GAINED OsKitaake09g192500
SBS Chr10 3463854 A-C Hetero INTERGENIC
SBS Chr10 7374880 G-A Hetero INTERGENIC
SBS Chr10 7374881 T-G Hetero INTERGENIC
SBS Chr10 7382719 T-A Hetero INTRON
SBS Chr10 8216018 A-T Hetero INTERGENIC
SBS Chr10 8476308 C-T Hetero INTERGENIC
SBS Chr10 10008376 C-T Hetero INTERGENIC
SBS Chr10 12166786 C-G Hetero INTERGENIC
SBS Chr10 21412129 C-T Hetero INTERGENIC
SBS Chr10 21934457 C-T Hetero INTRON
SBS Chr11 1782542 C-T Hetero SYNONYMOUS_STOP
SBS Chr11 9017545 C-T Hetero INTERGENIC
SBS Chr11 10284859 G-A Hetero INTERGENIC
SBS Chr11 10284860 G-A Hetero INTERGENIC
SBS Chr11 15682057 G-A Hetero INTERGENIC
SBS Chr11 15989328 T-C Hetero INTRON
SBS Chr11 19046349 G-T Hetero INTERGENIC
SBS Chr11 20825562 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g164500
SBS Chr11 27977310 A-G Hetero INTERGENIC
SBS Chr12 4906874 A-G Homo INTERGENIC
SBS Chr12 5108600 T-A Homo INTERGENIC
SBS Chr12 5114835 G-A Homo INTERGENIC
SBS Chr12 11804402 C-A Hetero INTERGENIC
SBS Chr12 18557749 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake12g135900
SBS Chr12 26843283 A-T Hetero INTERGENIC
SBS Chr12 26843380 T-G Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1365001 1383000 17999 OsKitaake05g017100
Deletion Chr9 4753186 4753187 1
Deletion Chr12 5048774 5048778 4
Deletion Chr12 5108522 5108535 13
Deletion Chr10 6755068 6755074 6
Deletion Chr10 7506001 7559000 52999 OsKitaake10g048800
Deletion Chr10 7759001 7883000 123999 5
Deletion Chr11 9169266 9169267 1
Deletion Chr11 10059789 10059795 6
Deletion Chr2 13105098 13105100 2
Deletion Chr2 14074374 14074376 2
Deletion Chr2 16436233 16436235 2
Deletion Chr11 16710685 16710687 2
Deletion Chr5 18677205 18677207 2
Deletion Chr7 18737239 18737252 13
Deletion Chr2 24180314 24180316 2
Deletion Chr1 24454169 24454170 1
Deletion Chr11 25120651 25120654 3
Deletion Chr7 27038939 27038940 1 OsKitaake07g252700
Deletion Chr4 27660001 27675000 14999 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 33751959 33751962 2

Inversions: 6

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 6881732 6978213
Inversion Chr10 7192112 7510167 OsKitaake10g048800
Inversion Chr8 15786124 16606753
Inversion Chr8 15786132 16606759
Inversion Chr12 18122327 18176228
Inversion Chr12 18122663 18130501 OsKitaake12g133400

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr7 5550349 Chr5 12673066 OsKitaake07g067400
Translocation Chr7 5551043 Chr5 12673055 OsKitaake07g067400
Translocation Chr10 6975026 Chr6 25405300
Translocation Chr10 6978198 Chr6 25405401
Translocation Chr12 18122655 Chr1 8224007

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7133160	G-A	Hetero	INTERGENIC
SBS	Chr1	8596903	G-A	Hetero	INTRON
SBS	Chr1	26074015	A-G	Homo	INTERGENIC
SBS	Chr1	35145071	T-C	Homo	INTERGENIC
SBS	Chr1	37743608	G-A	Hetero	INTERGENIC
SBS	Chr2	8842274	A-G	Hetero	INTERGENIC
SBS	Chr2	13232028	G-A	Hetero	INTERGENIC
SBS	Chr2	14933625	A-T	Hetero	INTERGENIC
SBS	Chr2	15195006	C-G	Hetero	INTERGENIC
SBS	Chr2	16221871	T-C	Hetero	INTERGENIC
SBS	Chr2	21719140	C-A	Hetero	INTERGENIC
SBS	Chr2	23981876	A-G	Hetero	INTERGENIC
SBS	Chr2	24966662	T-C	Hetero	INTERGENIC
SBS	Chr3	2436916	A-T	Hetero	INTERGENIC
SBS	Chr3	2657805	A-G	Hetero	INTERGENIC
SBS	Chr3	3945574	C-T	Hetero	INTERGENIC
SBS	Chr3	19619435	C-T	Hetero	INTRON
SBS	Chr3	29471085	T-C	Hetero	INTERGENIC
SBS	Chr3	29584209	C-T	Hetero	INTERGENIC
SBS	Chr3	32441976	A-C	Hetero	INTERGENIC
SBS	Chr3	33798609	C-T	Hetero	INTERGENIC
SBS	Chr4	18452733	G-C	Hetero	INTERGENIC
SBS	Chr4	28013611	C-T	Homo	INTERGENIC
SBS	Chr4	35275523	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g297900
SBS	Chr5	14485034	T-C	Hetero	INTERGENIC
SBS	Chr5	21221005	C-T	Hetero	INTERGENIC
SBS	Chr5	27355270	G-A	Hetero	UTR_5_PRIME
SBS	Chr6	4236511	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g058800
SBS	Chr6	4352642	G-T	Hetero	INTERGENIC
SBS	Chr6	4857648	C-A	Hetero	INTERGENIC
SBS	Chr6	4857649	G-T	Hetero	INTERGENIC
SBS	Chr6	9745338	G-T	Hetero	INTERGENIC
SBS	Chr6	26637629	C-T	Hetero	INTERGENIC
SBS	Chr7	10318146	G-T	Hetero	INTERGENIC
SBS	Chr7	10383883	G-A	Hetero	INTERGENIC
SBS	Chr7	14298704	C-T	Hetero	INTERGENIC
SBS	Chr7	19865424	C-T	Hetero	INTERGENIC
SBS	Chr7	20307308	C-A	Hetero	INTERGENIC
SBS	Chr7	26976974	C-A	Hetero	UTR_3_PRIME
SBS	Chr8	10928936	T-C	Hetero	INTERGENIC
SBS	Chr8	14134671	A-T	Hetero	INTERGENIC
SBS	Chr8	15284496	G-A	Hetero	INTERGENIC
SBS	Chr8	18447756	T-A	Homo	INTRON
SBS	Chr8	22315972	C-T	Hetero	INTERGENIC
SBS	Chr8	28302249	A-T	Hetero	INTERGENIC
SBS	Chr9	8588008	C-T	Hetero	INTRON
SBS	Chr9	21766491	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g192500
SBS	Chr9	21766492	C-T	Homo	STOP_GAINED	OsKitaake09g192500
SBS	Chr10	3463854	A-C	Hetero	INTERGENIC
SBS	Chr10	7374880	G-A	Hetero	INTERGENIC
SBS	Chr10	7374881	T-G	Hetero	INTERGENIC
SBS	Chr10	7382719	T-A	Hetero	INTRON
SBS	Chr10	8216018	A-T	Hetero	INTERGENIC
SBS	Chr10	8476308	C-T	Hetero	INTERGENIC
SBS	Chr10	10008376	C-T	Hetero	INTERGENIC
SBS	Chr10	12166786	C-G	Hetero	INTERGENIC
SBS	Chr10	21412129	C-T	Hetero	INTERGENIC
SBS	Chr10	21934457	C-T	Hetero	INTRON
SBS	Chr11	1782542	C-T	Hetero	SYNONYMOUS_STOP
SBS	Chr11	9017545	C-T	Hetero	INTERGENIC
SBS	Chr11	10284859	G-A	Hetero	INTERGENIC
SBS	Chr11	10284860	G-A	Hetero	INTERGENIC
SBS	Chr11	15682057	G-A	Hetero	INTERGENIC
SBS	Chr11	15989328	T-C	Hetero	INTRON
SBS	Chr11	19046349	G-T	Hetero	INTERGENIC
SBS	Chr11	20825562	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g164500
SBS	Chr11	27977310	A-G	Hetero	INTERGENIC
SBS	Chr12	4906874	A-G	Homo	INTERGENIC
SBS	Chr12	5108600	T-A	Homo	INTERGENIC
SBS	Chr12	5114835	G-A	Homo	INTERGENIC
SBS	Chr12	11804402	C-A	Hetero	INTERGENIC
SBS	Chr12	18557749	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g135900
SBS	Chr12	26843283	A-T	Hetero	INTERGENIC
SBS	Chr12	26843380	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1365001	1383000	17999	OsKitaake05g017100
Deletion	Chr9	4753186	4753187	1
Deletion	Chr12	5048774	5048778	4
Deletion	Chr12	5108522	5108535	13
Deletion	Chr10	6755068	6755074	6
Deletion	Chr10	7506001	7559000	52999	OsKitaake10g048800
Deletion	Chr10	7759001	7883000	123999	5
Deletion	Chr11	9169266	9169267	1
Deletion	Chr11	10059789	10059795	6
Deletion	Chr2	13105098	13105100	2
Deletion	Chr2	14074374	14074376	2
Deletion	Chr2	16436233	16436235	2
Deletion	Chr11	16710685	16710687	2
Deletion	Chr5	18677205	18677207	2
Deletion	Chr7	18737239	18737252	13
Deletion	Chr2	24180314	24180316	2
Deletion	Chr1	24454169	24454170	1
Deletion	Chr11	25120651	25120654	3
Deletion	Chr7	27038939	27038940	1	OsKitaake07g252700
Deletion	Chr4	27660001	27675000	14999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	6881732	6978213
Inversion	Chr10	7192112	7510167	OsKitaake10g048800
Inversion	Chr8	15786124	16606753
Inversion	Chr8	15786132	16606759
Inversion	Chr12	18122327	18176228
Inversion	Chr12	18122663	18130501	OsKitaake12g133400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes