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Mutant Information

Mutant Name	FN2781-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2781-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 83

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3743189 T-C Homo INTRON
SBS Chr1 11012081 G-A Hetero INTERGENIC
SBS Chr1 12172058 G-T Hetero INTERGENIC
SBS Chr1 13307956 G-A Hetero INTERGENIC
SBS Chr1 18678353 C-A Hetero INTERGENIC
SBS Chr1 18720393 G-A Hetero INTERGENIC
SBS Chr1 22746923 G-A Homo INTERGENIC
SBS Chr1 22746924 C-A Homo INTERGENIC
SBS Chr1 24941234 G-A Hetero INTRON
SBS Chr1 27951321 T-C Hetero INTERGENIC
SBS Chr1 27951325 G-A Hetero INTERGENIC
SBS Chr1 28476936 G-T Homo INTERGENIC
SBS Chr1 36723049 A-T Hetero INTRON
SBS Chr1 36723050 A-T Hetero INTRON
SBS Chr2 1983800 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g030100
SBS Chr2 1983801 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g030100
SBS Chr2 1983805 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 2517482 T-G Hetero INTERGENIC
SBS Chr2 11736355 C-A Hetero INTERGENIC
SBS Chr2 13177858 G-C Hetero INTERGENIC
SBS Chr2 17184790 G-C Hetero INTERGENIC
SBS Chr2 17238941 C-A Hetero INTERGENIC
SBS Chr2 29936886 C-T Hetero INTERGENIC
SBS Chr2 32441348 C-T Hetero START_GAINED
SBS Chr2 32515853 C-T Hetero INTERGENIC
SBS Chr3 3196399 A-T Homo INTRON
SBS Chr3 3196401 A-T Homo INTRON
SBS Chr3 3196403 C-G Homo INTRON
SBS Chr3 5263097 G-A Homo INTERGENIC
SBS Chr3 7740483 G-A Homo INTERGENIC
SBS Chr3 15729038 C-T Homo INTERGENIC
SBS Chr3 32521322 C-T Hetero INTERGENIC
SBS Chr4 2409228 G-A Hetero INTERGENIC
SBS Chr4 3636046 C-T Hetero INTRON
SBS Chr4 4346819 C-A Hetero INTRON
SBS Chr4 8738664 C-A Hetero INTERGENIC
SBS Chr4 16598246 T-G Hetero INTERGENIC
SBS Chr4 21366815 C-A Hetero INTRON
SBS Chr4 25717811 C-T Hetero UTR_3_PRIME
SBS Chr4 31688704 G-T Hetero INTERGENIC
SBS Chr4 33005938 T-A Hetero SPLICE_SITE_REGION
SBS Chr4 34107784 T-C Hetero INTERGENIC
SBS Chr4 35597503 C-A Hetero INTERGENIC
SBS Chr5 725378 T-A Hetero INTRON
SBS Chr5 725379 G-A Hetero INTRON
SBS Chr5 13606246 A-C Homo INTERGENIC
SBS Chr5 25597827 A-G Hetero INTERGENIC
SBS Chr6 10771224 G-A Hetero INTERGENIC
SBS Chr6 19143140 G-A Homo INTRON
SBS Chr6 19828782 G-A Hetero INTERGENIC
SBS Chr6 21683881 G-T Hetero INTERGENIC
SBS Chr6 26398033 T-A Homo INTRON
SBS Chr7 5964766 T-C Homo INTERGENIC
SBS Chr7 9425627 C-A Hetero INTERGENIC
SBS Chr7 11981425 C-A Hetero INTERGENIC
SBS Chr7 12271922 G-A Hetero INTERGENIC
SBS Chr7 17551458 G-T Hetero INTERGENIC
SBS Chr8 3775847 G-A Homo NON_SYNONYMOUS_CODING OsKitaake08g042900
SBS Chr8 5594499 C-T Hetero INTERGENIC
SBS Chr9 4769095 G-A Hetero INTERGENIC
SBS Chr9 9772479 C-T Hetero INTERGENIC
SBS Chr9 9932553 A-T Hetero INTERGENIC
SBS Chr9 14660304 C-T Hetero INTERGENIC
SBS Chr9 15134513 G-A Hetero INTERGENIC
SBS Chr9 15422125 T-C Hetero INTERGENIC
SBS Chr9 17660518 A-C Hetero INTERGENIC
SBS Chr9 22506772 C-T Hetero UTR_3_PRIME
SBS Chr10 302272 A-T Hetero INTERGENIC
SBS Chr10 653472 G-C Hetero INTERGENIC
SBS Chr10 3523539 C-T Hetero INTERGENIC
SBS Chr10 12847763 C-T Hetero INTERGENIC
SBS Chr10 16579546 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g112900
SBS Chr10 16579548 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 22317932 G-C Hetero INTERGENIC
SBS Chr11 1418519 T-C Hetero INTERGENIC
SBS Chr11 6964348 C-A Hetero INTERGENIC
SBS Chr11 19509185 A-G Homo INTERGENIC
SBS Chr11 19532260 C-T Hetero INTERGENIC
SBS Chr11 19806103 G-A Hetero INTERGENIC
SBS Chr11 24466073 A-T Hetero INTERGENIC
SBS Chr11 28615317 G-A Hetero INTRON
SBS Chr12 1678536 G-C Hetero INTERGENIC
SBS Chr12 22107926 G-A Hetero INTRON

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 472299 472317 18
Deletion Chr8 2599268 2599272 4
Deletion Chr3 2741866 2741870 4
Deletion Chr3 2750380 2750388 8
Deletion Chr8 3717662 3717678 16 OsKitaake08g041500
Deletion Chr1 3830826 3830829 3
Deletion Chr9 5185510 5185512 2
Deletion Chr5 5314631 5314637 6
Deletion Chr12 6520618 6520639 21
Deletion Chr2 7014001 7052000 37999 OsKitaake02g094600
Deletion Chr3 8380765 8380768 3 OsKitaake03g115400
Deletion Chr2 10961105 10961111 6
Deletion Chr2 11958083 11958095 12 OsKitaake02g135900
Deletion Chr1 12993592 12993616 24
Deletion Chr4 13871701 13871709 8
Deletion Chr1 15459203 15459204 1
Deletion Chr4 17595665 17595666 1
Deletion Chr11 17654804 17654821 17
Deletion Chr10 17840220 17840230 10
Deletion Chr10 18757227 18757246 19
Deletion Chr4 19172690 19172691 1
Deletion Chr11 19801737 19801741 4
Deletion Chr5 20132316 20132330 14
Deletion Chr5 20157379 20157385 6
Deletion Chr3 20403678 20403679 1
Deletion Chr2 20506581 20506582 1
Deletion Chr1 21765199 21765201 2
Deletion Chr11 29041330 29041331 1
Deletion Chr3 31246118 31246119 1
Deletion Chr2 33919377 33919379 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr9 553914 553917 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 1308037 1425151
Inversion Chr11 25326975 25947861 OsKitaake11g203300
Inversion Chr11 25327016 25947901 OsKitaake11g203300
Inversion Chr2 31252839 31685690 OsKitaake02g322201
Inversion Chr2 31252843 31685689 OsKitaake02g322201

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 1308028 Chr4 31642650

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3743189	T-C	Homo	INTRON
SBS	Chr1	11012081	G-A	Hetero	INTERGENIC
SBS	Chr1	12172058	G-T	Hetero	INTERGENIC
SBS	Chr1	13307956	G-A	Hetero	INTERGENIC
SBS	Chr1	18678353	C-A	Hetero	INTERGENIC
SBS	Chr1	18720393	G-A	Hetero	INTERGENIC
SBS	Chr1	22746923	G-A	Homo	INTERGENIC
SBS	Chr1	22746924	C-A	Homo	INTERGENIC
SBS	Chr1	24941234	G-A	Hetero	INTRON
SBS	Chr1	27951321	T-C	Hetero	INTERGENIC
SBS	Chr1	27951325	G-A	Hetero	INTERGENIC
SBS	Chr1	28476936	G-T	Homo	INTERGENIC
SBS	Chr1	36723049	A-T	Hetero	INTRON
SBS	Chr1	36723050	A-T	Hetero	INTRON
SBS	Chr2	1983800	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g030100
SBS	Chr2	1983801	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g030100
SBS	Chr2	1983805	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	2517482	T-G	Hetero	INTERGENIC
SBS	Chr2	11736355	C-A	Hetero	INTERGENIC
SBS	Chr2	13177858	G-C	Hetero	INTERGENIC
SBS	Chr2	17184790	G-C	Hetero	INTERGENIC
SBS	Chr2	17238941	C-A	Hetero	INTERGENIC
SBS	Chr2	29936886	C-T	Hetero	INTERGENIC
SBS	Chr2	32441348	C-T	Hetero	START_GAINED
SBS	Chr2	32515853	C-T	Hetero	INTERGENIC
SBS	Chr3	3196399	A-T	Homo	INTRON
SBS	Chr3	3196401	A-T	Homo	INTRON
SBS	Chr3	3196403	C-G	Homo	INTRON
SBS	Chr3	5263097	G-A	Homo	INTERGENIC
SBS	Chr3	7740483	G-A	Homo	INTERGENIC
SBS	Chr3	15729038	C-T	Homo	INTERGENIC
SBS	Chr3	32521322	C-T	Hetero	INTERGENIC
SBS	Chr4	2409228	G-A	Hetero	INTERGENIC
SBS	Chr4	3636046	C-T	Hetero	INTRON
SBS	Chr4	4346819	C-A	Hetero	INTRON
SBS	Chr4	8738664	C-A	Hetero	INTERGENIC
SBS	Chr4	16598246	T-G	Hetero	INTERGENIC
SBS	Chr4	21366815	C-A	Hetero	INTRON
SBS	Chr4	25717811	C-T	Hetero	UTR_3_PRIME
SBS	Chr4	31688704	G-T	Hetero	INTERGENIC
SBS	Chr4	33005938	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr4	34107784	T-C	Hetero	INTERGENIC
SBS	Chr4	35597503	C-A	Hetero	INTERGENIC
SBS	Chr5	725378	T-A	Hetero	INTRON
SBS	Chr5	725379	G-A	Hetero	INTRON
SBS	Chr5	13606246	A-C	Homo	INTERGENIC
SBS	Chr5	25597827	A-G	Hetero	INTERGENIC
SBS	Chr6	10771224	G-A	Hetero	INTERGENIC
SBS	Chr6	19143140	G-A	Homo	INTRON
SBS	Chr6	19828782	G-A	Hetero	INTERGENIC
SBS	Chr6	21683881	G-T	Hetero	INTERGENIC
SBS	Chr6	26398033	T-A	Homo	INTRON
SBS	Chr7	5964766	T-C	Homo	INTERGENIC
SBS	Chr7	9425627	C-A	Hetero	INTERGENIC
SBS	Chr7	11981425	C-A	Hetero	INTERGENIC
SBS	Chr7	12271922	G-A	Hetero	INTERGENIC
SBS	Chr7	17551458	G-T	Hetero	INTERGENIC
SBS	Chr8	3775847	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake08g042900
SBS	Chr8	5594499	C-T	Hetero	INTERGENIC
SBS	Chr9	4769095	G-A	Hetero	INTERGENIC
SBS	Chr9	9772479	C-T	Hetero	INTERGENIC
SBS	Chr9	9932553	A-T	Hetero	INTERGENIC
SBS	Chr9	14660304	C-T	Hetero	INTERGENIC
SBS	Chr9	15134513	G-A	Hetero	INTERGENIC
SBS	Chr9	15422125	T-C	Hetero	INTERGENIC
SBS	Chr9	17660518	A-C	Hetero	INTERGENIC
SBS	Chr9	22506772	C-T	Hetero	UTR_3_PRIME
SBS	Chr10	302272	A-T	Hetero	INTERGENIC
SBS	Chr10	653472	G-C	Hetero	INTERGENIC
SBS	Chr10	3523539	C-T	Hetero	INTERGENIC
SBS	Chr10	12847763	C-T	Hetero	INTERGENIC
SBS	Chr10	16579546	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g112900
SBS	Chr10	16579548	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	22317932	G-C	Hetero	INTERGENIC
SBS	Chr11	1418519	T-C	Hetero	INTERGENIC
SBS	Chr11	6964348	C-A	Hetero	INTERGENIC
SBS	Chr11	19509185	A-G	Homo	INTERGENIC
SBS	Chr11	19532260	C-T	Hetero	INTERGENIC
SBS	Chr11	19806103	G-A	Hetero	INTERGENIC
SBS	Chr11	24466073	A-T	Hetero	INTERGENIC
SBS	Chr11	28615317	G-A	Hetero	INTRON
SBS	Chr12	1678536	G-C	Hetero	INTERGENIC
SBS	Chr12	22107926	G-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	472299	472317	18
Deletion	Chr8	2599268	2599272	4
Deletion	Chr3	2741866	2741870	4
Deletion	Chr3	2750380	2750388	8
Deletion	Chr8	3717662	3717678	16	OsKitaake08g041500
Deletion	Chr1	3830826	3830829	3
Deletion	Chr9	5185510	5185512	2
Deletion	Chr5	5314631	5314637	6
Deletion	Chr12	6520618	6520639	21
Deletion	Chr2	7014001	7052000	37999	OsKitaake02g094600
Deletion	Chr3	8380765	8380768	3	OsKitaake03g115400
Deletion	Chr2	10961105	10961111	6
Deletion	Chr2	11958083	11958095	12	OsKitaake02g135900
Deletion	Chr1	12993592	12993616	24
Deletion	Chr4	13871701	13871709	8
Deletion	Chr1	15459203	15459204	1
Deletion	Chr4	17595665	17595666	1
Deletion	Chr11	17654804	17654821	17
Deletion	Chr10	17840220	17840230	10
Deletion	Chr10	18757227	18757246	19
Deletion	Chr4	19172690	19172691	1
Deletion	Chr11	19801737	19801741	4
Deletion	Chr5	20132316	20132330	14
Deletion	Chr5	20157379	20157385	6
Deletion	Chr3	20403678	20403679	1
Deletion	Chr2	20506581	20506582	1
Deletion	Chr1	21765199	21765201	2
Deletion	Chr11	29041330	29041331	1
Deletion	Chr3	31246118	31246119	1
Deletion	Chr2	33919377	33919379	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	1308037	1425151
Inversion	Chr11	25326975	25947861	OsKitaake11g203300
Inversion	Chr11	25327016	25947901	OsKitaake11g203300
Inversion	Chr2	31252839	31685690	OsKitaake02g322201
Inversion	Chr2	31252843	31685689	OsKitaake02g322201

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes