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Mutant Information

Mutant Name	FN2782-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2782-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5463660 A-T Hetero INTERGENIC
SBS Chr1 7202449 T-A Hetero INTRON
SBS Chr1 36730675 T-G Hetero INTERGENIC
SBS Chr2 6453247 C-T Hetero INTERGENIC
SBS Chr2 7920056 C-G Hetero INTERGENIC
SBS Chr2 11422469 C-T Hetero INTERGENIC
SBS Chr2 27068034 T-C Hetero UTR_3_PRIME
SBS Chr2 35714909 T-G Hetero INTERGENIC
SBS Chr2 35990355 G-C Hetero INTERGENIC
SBS Chr3 10436498 T-A Hetero INTERGENIC
SBS Chr3 22433232 G-T Hetero INTERGENIC
SBS Chr3 34799697 C-T Hetero INTRON
SBS Chr4 7823035 C-G Hetero INTERGENIC
SBS Chr4 7907322 C-T Hetero INTERGENIC
SBS Chr4 10177112 C-A Hetero INTERGENIC
SBS Chr4 21225408 G-A Hetero INTERGENIC
SBS Chr4 21274850 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g117700
SBS Chr4 24952424 G-A Hetero INTERGENIC
SBS Chr5 11133428 T-C Homo INTERGENIC
SBS Chr5 22932413 A-G Hetero UTR_3_PRIME
SBS Chr5 28447736 G-T Hetero INTERGENIC
SBS Chr5 28760235 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g270000
SBS Chr6 10910167 C-T Hetero INTERGENIC
SBS Chr6 22489543 G-A Homo INTERGENIC
SBS Chr6 27620958 G-A Hetero INTERGENIC
SBS Chr6 28523433 G-A Homo INTERGENIC
SBS Chr7 12068084 C-T Hetero INTERGENIC
SBS Chr7 14811762 G-A Hetero INTRON
SBS Chr7 15190188 T-C Hetero INTERGENIC
SBS Chr7 15411140 A-T Hetero INTERGENIC
SBS Chr7 20291182 A-G Hetero INTERGENIC
SBS Chr7 21143596 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 26825370 C-T Hetero INTERGENIC
SBS Chr8 5125199 C-T Hetero INTERGENIC
SBS Chr8 8969594 G-A Hetero INTERGENIC
SBS Chr8 16553439 A-T Hetero INTRON
SBS Chr8 18295914 C-G Hetero INTERGENIC
SBS Chr8 18969110 G-C Homo INTERGENIC
SBS Chr8 20341535 A-T Hetero INTERGENIC
SBS Chr8 20350602 T-C Hetero SYNONYMOUS_CODING
SBS Chr10 1267577 G-C Hetero INTERGENIC
SBS Chr10 2554106 C-T Hetero INTERGENIC
SBS Chr10 5153786 C-T Hetero INTERGENIC
SBS Chr10 8907721 G-A Hetero INTERGENIC
SBS Chr10 9592447 T-G Hetero INTERGENIC
SBS Chr10 10060722 T-A Hetero INTERGENIC
SBS Chr10 13167052 A-T Hetero INTERGENIC
SBS Chr10 21426737 G-T Hetero INTERGENIC
SBS Chr11 10158810 G-A Hetero INTERGENIC
SBS Chr11 12330703 C-T Hetero INTERGENIC
SBS Chr11 12448523 G-C Hetero INTERGENIC
SBS Chr11 18080961 G-A Hetero INTERGENIC
SBS Chr11 18285098 G-C Hetero INTERGENIC
SBS Chr11 28462758 A-G Hetero INTERGENIC
SBS Chr12 2928017 G-A Hetero INTERGENIC
SBS Chr12 10667736 C-T Hetero INTERGENIC
SBS Chr12 17437891 G-A Hetero INTERGENIC
SBS Chr12 25697057 C-A Hetero INTRON

Deletions: 28

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 662109 662117 8
Deletion Chr1 977422 977427 5
Deletion Chr12 994894 994896 2
Deletion Chr9 2383041 2383045 4
Deletion Chr3 2981548 2981549 1 OsKitaake03g042100
Deletion Chr1 8088303 8088310 7
Deletion Chr1 8243544 8243556 12
Deletion Chr6 8651963 8651974 11
Deletion Chr12 9227732 9227736 4
Deletion Chr2 11577155 11577158 3 OsKitaake02g133800
Deletion Chr2 15497452 15497465 13
Deletion Chr6 15658140 15658143 3 OsKitaake06g152800
Deletion Chr10 17606446 17606451 5 OsKitaake10g120600
Deletion Chr2 18165115 18165123 8
Deletion Chr4 19489911 19489913 2
Deletion Chr10 20243780 20243788 8
Deletion Chr8 20482986 20482994 8
Deletion Chr7 20776912 20776913 1
Deletion Chr5 22491538 22491542 4
Deletion Chr5 22973488 22973489 1
Deletion Chr4 22992669 22992670 1
Deletion Chr1 23223971 23223972 1
Deletion Chr7 25212917 25212918 1
Deletion Chr3 26944014 26944033 19
Deletion Chr8 27231814 27231815 1
Deletion Chr2 28180473 28180475 2
Deletion Chr1 31500352 31500361 9 OsKitaake01g316200
Deletion Chr3 33922212 33922214 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 31401352 31401356 3
Insertion Chr6 19016029 19016031 1
Insertion Chr8 7856211 7856221 9
Insertion Chr9 8533505 8533509 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 11016907 11578175 2
Inversion Chr11 11016911 11578193 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5463660	A-T	Hetero	INTERGENIC
SBS	Chr1	7202449	T-A	Hetero	INTRON
SBS	Chr1	36730675	T-G	Hetero	INTERGENIC
SBS	Chr2	6453247	C-T	Hetero	INTERGENIC
SBS	Chr2	7920056	C-G	Hetero	INTERGENIC
SBS	Chr2	11422469	C-T	Hetero	INTERGENIC
SBS	Chr2	27068034	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	35714909	T-G	Hetero	INTERGENIC
SBS	Chr2	35990355	G-C	Hetero	INTERGENIC
SBS	Chr3	10436498	T-A	Hetero	INTERGENIC
SBS	Chr3	22433232	G-T	Hetero	INTERGENIC
SBS	Chr3	34799697	C-T	Hetero	INTRON
SBS	Chr4	7823035	C-G	Hetero	INTERGENIC
SBS	Chr4	7907322	C-T	Hetero	INTERGENIC
SBS	Chr4	10177112	C-A	Hetero	INTERGENIC
SBS	Chr4	21225408	G-A	Hetero	INTERGENIC
SBS	Chr4	21274850	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g117700
SBS	Chr4	24952424	G-A	Hetero	INTERGENIC
SBS	Chr5	11133428	T-C	Homo	INTERGENIC
SBS	Chr5	22932413	A-G	Hetero	UTR_3_PRIME
SBS	Chr5	28447736	G-T	Hetero	INTERGENIC
SBS	Chr5	28760235	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g270000
SBS	Chr6	10910167	C-T	Hetero	INTERGENIC
SBS	Chr6	22489543	G-A	Homo	INTERGENIC
SBS	Chr6	27620958	G-A	Hetero	INTERGENIC
SBS	Chr6	28523433	G-A	Homo	INTERGENIC
SBS	Chr7	12068084	C-T	Hetero	INTERGENIC
SBS	Chr7	14811762	G-A	Hetero	INTRON
SBS	Chr7	15190188	T-C	Hetero	INTERGENIC
SBS	Chr7	15411140	A-T	Hetero	INTERGENIC
SBS	Chr7	20291182	A-G	Hetero	INTERGENIC
SBS	Chr7	21143596	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	26825370	C-T	Hetero	INTERGENIC
SBS	Chr8	5125199	C-T	Hetero	INTERGENIC
SBS	Chr8	8969594	G-A	Hetero	INTERGENIC
SBS	Chr8	16553439	A-T	Hetero	INTRON
SBS	Chr8	18295914	C-G	Hetero	INTERGENIC
SBS	Chr8	18969110	G-C	Homo	INTERGENIC
SBS	Chr8	20341535	A-T	Hetero	INTERGENIC
SBS	Chr8	20350602	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr10	1267577	G-C	Hetero	INTERGENIC
SBS	Chr10	2554106	C-T	Hetero	INTERGENIC
SBS	Chr10	5153786	C-T	Hetero	INTERGENIC
SBS	Chr10	8907721	G-A	Hetero	INTERGENIC
SBS	Chr10	9592447	T-G	Hetero	INTERGENIC
SBS	Chr10	10060722	T-A	Hetero	INTERGENIC
SBS	Chr10	13167052	A-T	Hetero	INTERGENIC
SBS	Chr10	21426737	G-T	Hetero	INTERGENIC
SBS	Chr11	10158810	G-A	Hetero	INTERGENIC
SBS	Chr11	12330703	C-T	Hetero	INTERGENIC
SBS	Chr11	12448523	G-C	Hetero	INTERGENIC
SBS	Chr11	18080961	G-A	Hetero	INTERGENIC
SBS	Chr11	18285098	G-C	Hetero	INTERGENIC
SBS	Chr11	28462758	A-G	Hetero	INTERGENIC
SBS	Chr12	2928017	G-A	Hetero	INTERGENIC
SBS	Chr12	10667736	C-T	Hetero	INTERGENIC
SBS	Chr12	17437891	G-A	Hetero	INTERGENIC
SBS	Chr12	25697057	C-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	662109	662117	8
Deletion	Chr1	977422	977427	5
Deletion	Chr12	994894	994896	2
Deletion	Chr9	2383041	2383045	4
Deletion	Chr3	2981548	2981549	1	OsKitaake03g042100
Deletion	Chr1	8088303	8088310	7
Deletion	Chr1	8243544	8243556	12
Deletion	Chr6	8651963	8651974	11
Deletion	Chr12	9227732	9227736	4
Deletion	Chr2	11577155	11577158	3	OsKitaake02g133800
Deletion	Chr2	15497452	15497465	13
Deletion	Chr6	15658140	15658143	3	OsKitaake06g152800
Deletion	Chr10	17606446	17606451	5	OsKitaake10g120600
Deletion	Chr2	18165115	18165123	8
Deletion	Chr4	19489911	19489913	2
Deletion	Chr10	20243780	20243788	8
Deletion	Chr8	20482986	20482994	8
Deletion	Chr7	20776912	20776913	1
Deletion	Chr5	22491538	22491542	4
Deletion	Chr5	22973488	22973489	1
Deletion	Chr4	22992669	22992670	1
Deletion	Chr1	23223971	23223972	1
Deletion	Chr7	25212917	25212918	1
Deletion	Chr3	26944014	26944033	19
Deletion	Chr8	27231814	27231815	1
Deletion	Chr2	28180473	28180475	2
Deletion	Chr1	31500352	31500361	9	OsKitaake01g316200
Deletion	Chr3	33922212	33922214	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	11016907	11578175	2
Inversion	Chr11	11016911	11578193	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes