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Mutant Information

Mutant Name	FN2784-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2784-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 56

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 19564173 G-A Hetero INTERGENIC
SBS Chr1 24173884 T-A Hetero INTERGENIC
SBS Chr1 34063474 A-G Hetero INTERGENIC
SBS Chr2 2415455 G-T Homo INTRON
SBS Chr2 2783628 G-A Homo INTERGENIC
SBS Chr2 5961628 A-T Hetero INTERGENIC
SBS Chr2 8837583 A-G Hetero INTRON
SBS Chr2 19481358 C-T Hetero INTERGENIC
SBS Chr2 19894471 T-A Hetero INTERGENIC
SBS Chr2 28451009 C-T Hetero INTERGENIC
SBS Chr2 31511785 C-T Hetero INTERGENIC
SBS Chr2 35636378 G-A Hetero INTERGENIC
SBS Chr3 24980675 C-T Homo INTERGENIC
SBS Chr3 30844833 T-A Hetero UTR_5_PRIME
SBS Chr3 31793127 G-A Hetero INTERGENIC
SBS Chr3 34955227 C-T Hetero INTRON
SBS Chr4 2624911 G-A Homo INTERGENIC
SBS Chr4 9648593 G-C Hetero INTERGENIC
SBS Chr4 11569187 G-T Homo INTERGENIC
SBS Chr4 15295087 A-G Homo INTERGENIC
SBS Chr4 16074825 C-A Homo INTERGENIC
SBS Chr4 26306281 C-T Hetero INTERGENIC
SBS Chr4 26618891 C-T Hetero INTERGENIC
SBS Chr4 32894659 T-A Hetero INTERGENIC
SBS Chr5 4759794 C-T Hetero SYNONYMOUS_CODING
SBS Chr5 5611377 C-T Homo INTERGENIC
SBS Chr5 6470594 G-T Homo INTERGENIC
SBS Chr5 12563531 C-T Hetero INTERGENIC
SBS Chr5 14106968 C-T Hetero INTERGENIC
SBS Chr5 15136398 A-T Hetero INTERGENIC
SBS Chr5 22583408 C-T Hetero INTERGENIC
SBS Chr6 937151 C-A Hetero UTR_3_PRIME
SBS Chr6 22731373 T-A Hetero INTRON
SBS Chr6 26884023 G-A Hetero INTERGENIC
SBS Chr6 30555347 G-A Hetero INTRON
SBS Chr8 13639059 C-T Hetero INTERGENIC
SBS Chr8 18008550 T-C Hetero INTERGENIC
SBS Chr8 26581104 C-T Hetero INTERGENIC
SBS Chr9 3040597 G-A Hetero INTERGENIC
SBS Chr9 4452937 C-T Hetero INTERGENIC
SBS Chr9 6687287 T-C Hetero INTERGENIC
SBS Chr9 8088259 T-C Hetero INTERGENIC
SBS Chr9 22054101 A-G Hetero INTERGENIC
SBS Chr10 4991142 C-T Hetero INTERGENIC
SBS Chr10 14631233 G-A Homo INTERGENIC
SBS Chr10 23862569 A-T Homo NON_SYNONYMOUS_CODING OsKitaake10g205300
SBS Chr11 314706 T-A Hetero INTRON
SBS Chr11 5834169 G-C Hetero INTERGENIC
SBS Chr11 19599253 T-C Hetero INTERGENIC
SBS Chr11 25523404 A-T Hetero INTERGENIC
SBS Chr11 29202533 G-A Hetero INTERGENIC
SBS Chr12 518836 G-T Hetero INTERGENIC
SBS Chr12 1881966 G-T Hetero INTERGENIC
SBS Chr12 6416783 A-T Hetero INTERGENIC
SBS Chr12 8460881 G-A Homo INTERGENIC
SBS Chr12 18868696 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1292126 1292132 6
Deletion Chr11 3086420 3086425 5
Deletion Chr5 8609614 8609623 9
Deletion Chr4 15294861 15294866 5
Deletion Chr10 15639140 15639141 1
Deletion Chr6 22052144 22052146 2 OsKitaake06g194200
Deletion Chr3 22607148 22607155 7
Deletion Chr2 24414001 24423000 8999
Deletion Chr3 25236633 25236646 13
Deletion Chr7 25532715 25532716 1
Deletion Chr8 25552987 25552993 6
Deletion Chr4 26433356 26433357 1 OsKitaake04g189400
Deletion Chr3 32978530 32978532 2
Deletion Chr3 35793486 35793501 15
Deletion Chr1 38704001 38713000 8999 OsKitaake01g413900

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 28559347 28559349 1
Insertion Chr3 29208999 29209002 2
Insertion Chr5 5179714 5179718 3
Insertion Chr8 28981834 28981837 2
Insertion Chr12 574573 574577 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 26641674 27088716 2
Inversion Chr4 26642552 27088723 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 15777223 Chr6 6447414

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	19564173	G-A	Hetero	INTERGENIC
SBS	Chr1	24173884	T-A	Hetero	INTERGENIC
SBS	Chr1	34063474	A-G	Hetero	INTERGENIC
SBS	Chr2	2415455	G-T	Homo	INTRON
SBS	Chr2	2783628	G-A	Homo	INTERGENIC
SBS	Chr2	5961628	A-T	Hetero	INTERGENIC
SBS	Chr2	8837583	A-G	Hetero	INTRON
SBS	Chr2	19481358	C-T	Hetero	INTERGENIC
SBS	Chr2	19894471	T-A	Hetero	INTERGENIC
SBS	Chr2	28451009	C-T	Hetero	INTERGENIC
SBS	Chr2	31511785	C-T	Hetero	INTERGENIC
SBS	Chr2	35636378	G-A	Hetero	INTERGENIC
SBS	Chr3	24980675	C-T	Homo	INTERGENIC
SBS	Chr3	30844833	T-A	Hetero	UTR_5_PRIME
SBS	Chr3	31793127	G-A	Hetero	INTERGENIC
SBS	Chr3	34955227	C-T	Hetero	INTRON
SBS	Chr4	2624911	G-A	Homo	INTERGENIC
SBS	Chr4	9648593	G-C	Hetero	INTERGENIC
SBS	Chr4	11569187	G-T	Homo	INTERGENIC
SBS	Chr4	15295087	A-G	Homo	INTERGENIC
SBS	Chr4	16074825	C-A	Homo	INTERGENIC
SBS	Chr4	26306281	C-T	Hetero	INTERGENIC
SBS	Chr4	26618891	C-T	Hetero	INTERGENIC
SBS	Chr4	32894659	T-A	Hetero	INTERGENIC
SBS	Chr5	4759794	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr5	5611377	C-T	Homo	INTERGENIC
SBS	Chr5	6470594	G-T	Homo	INTERGENIC
SBS	Chr5	12563531	C-T	Hetero	INTERGENIC
SBS	Chr5	14106968	C-T	Hetero	INTERGENIC
SBS	Chr5	15136398	A-T	Hetero	INTERGENIC
SBS	Chr5	22583408	C-T	Hetero	INTERGENIC
SBS	Chr6	937151	C-A	Hetero	UTR_3_PRIME
SBS	Chr6	22731373	T-A	Hetero	INTRON
SBS	Chr6	26884023	G-A	Hetero	INTERGENIC
SBS	Chr6	30555347	G-A	Hetero	INTRON
SBS	Chr8	13639059	C-T	Hetero	INTERGENIC
SBS	Chr8	18008550	T-C	Hetero	INTERGENIC
SBS	Chr8	26581104	C-T	Hetero	INTERGENIC
SBS	Chr9	3040597	G-A	Hetero	INTERGENIC
SBS	Chr9	4452937	C-T	Hetero	INTERGENIC
SBS	Chr9	6687287	T-C	Hetero	INTERGENIC
SBS	Chr9	8088259	T-C	Hetero	INTERGENIC
SBS	Chr9	22054101	A-G	Hetero	INTERGENIC
SBS	Chr10	4991142	C-T	Hetero	INTERGENIC
SBS	Chr10	14631233	G-A	Homo	INTERGENIC
SBS	Chr10	23862569	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g205300
SBS	Chr11	314706	T-A	Hetero	INTRON
SBS	Chr11	5834169	G-C	Hetero	INTERGENIC
SBS	Chr11	19599253	T-C	Hetero	INTERGENIC
SBS	Chr11	25523404	A-T	Hetero	INTERGENIC
SBS	Chr11	29202533	G-A	Hetero	INTERGENIC
SBS	Chr12	518836	G-T	Hetero	INTERGENIC
SBS	Chr12	1881966	G-T	Hetero	INTERGENIC
SBS	Chr12	6416783	A-T	Hetero	INTERGENIC
SBS	Chr12	8460881	G-A	Homo	INTERGENIC
SBS	Chr12	18868696	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1292126	1292132	6
Deletion	Chr11	3086420	3086425	5
Deletion	Chr5	8609614	8609623	9
Deletion	Chr4	15294861	15294866	5
Deletion	Chr10	15639140	15639141	1
Deletion	Chr6	22052144	22052146	2	OsKitaake06g194200
Deletion	Chr3	22607148	22607155	7
Deletion	Chr2	24414001	24423000	8999
Deletion	Chr3	25236633	25236646	13
Deletion	Chr7	25532715	25532716	1
Deletion	Chr8	25552987	25552993	6
Deletion	Chr4	26433356	26433357	1	OsKitaake04g189400
Deletion	Chr3	32978530	32978532	2
Deletion	Chr3	35793486	35793501	15
Deletion	Chr1	38704001	38713000	8999	OsKitaake01g413900

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	26641674	27088716	2
Inversion	Chr4	26642552	27088723	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes