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Mutant Information

Mutant Name	FN2785-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2785-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 57

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1565711 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g019000
SBS Chr1 7742716 A-G Hetero INTERGENIC
SBS Chr1 23777103 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g228100
SBS Chr1 25391058 C-T Hetero INTERGENIC
SBS Chr1 43088619 T-C Hetero INTERGENIC
SBS Chr2 1284272 A-C Hetero INTERGENIC
SBS Chr2 3966670 G-A Hetero INTERGENIC
SBS Chr2 7994352 A-G Hetero INTERGENIC
SBS Chr2 13414705 T-A Hetero INTERGENIC
SBS Chr2 13414706 C-A Hetero INTERGENIC
SBS Chr2 16130469 T-A Hetero INTERGENIC
SBS Chr2 20272141 C-A Hetero INTERGENIC
SBS Chr2 34076514 G-A Hetero INTERGENIC
SBS Chr2 35777209 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g376400
SBS Chr3 10471747 G-T Hetero INTERGENIC
SBS Chr3 13451615 T-A Hetero INTERGENIC
SBS Chr3 22383340 C-T Hetero INTERGENIC
SBS Chr3 22383341 C-T Hetero INTERGENIC
SBS Chr3 32591277 G-T Hetero INTERGENIC
SBS Chr4 10322307 G-A Homo INTERGENIC
SBS Chr4 30345337 C-A Hetero INTERGENIC
SBS Chr4 30544256 G-T Hetero INTERGENIC
SBS Chr5 17517566 G-A Hetero INTERGENIC
SBS Chr6 3285298 T-A Hetero INTERGENIC
SBS Chr6 14912305 G-A Homo INTERGENIC
SBS Chr6 15984335 C-A Hetero INTERGENIC
SBS Chr6 17287692 T-A Homo INTRON
SBS Chr6 18776249 C-T Homo INTRON
SBS Chr6 24279740 G-T Hetero INTERGENIC
SBS Chr6 25073154 C-T Hetero INTERGENIC
SBS Chr6 29715860 C-T Hetero UTR_3_PRIME
SBS Chr7 905224 G-A Hetero UTR_3_PRIME
SBS Chr7 6744012 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake07g077500
SBS Chr7 16577821 G-A Hetero INTERGENIC
SBS Chr7 18366897 T-C Hetero INTERGENIC
SBS Chr7 26793437 G-A Hetero INTERGENIC
SBS Chr8 827707 A-C Hetero INTERGENIC
SBS Chr8 7330871 C-A Hetero INTERGENIC
SBS Chr8 15142869 G-A Hetero INTERGENIC
SBS Chr9 332060 G-A Hetero INTERGENIC
SBS Chr9 10655931 C-T Hetero INTERGENIC
SBS Chr9 12911387 G-A Hetero INTERGENIC
SBS Chr10 2794494 G-C Hetero INTRON
SBS Chr10 7829118 C-G Hetero INTERGENIC
SBS Chr10 14958815 C-T Hetero INTERGENIC
SBS Chr10 17319649 C-A Hetero INTERGENIC
SBS Chr11 8038039 G-A Hetero INTERGENIC
SBS Chr11 9998883 A-G Hetero INTERGENIC
SBS Chr11 12965980 G-A Hetero INTERGENIC
SBS Chr11 14762842 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 14766709 C-T Hetero INTERGENIC
SBS Chr11 21481103 A-C Hetero INTERGENIC
SBS Chr11 21596077 A-C Hetero INTERGENIC
SBS Chr11 27586590 C-T Hetero INTERGENIC
SBS Chr11 29019661 G-A Hetero INTERGENIC
SBS Chr12 16372420 G-T Hetero INTERGENIC
SBS Chr12 19371825 T-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 1575413 1575415 2
Deletion Chr8 3196047 3196053 6
Deletion Chr2 6680914 6680915 1
Deletion Chr7 6850003 6850005 2
Deletion Chr12 10727001 10772000 44999 2
Deletion Chr9 13398950 13398961 11
Deletion Chr3 16245684 16245686 2
Deletion Chr7 16578090 16578104 14 OsKitaake07g136200
Deletion Chr9 22385248 22385260 12 OsKitaake09g203100
Deletion Chr7 22813003 22813004 1
Deletion Chr3 24204297 24204298 1
Deletion Chr1 30625190 30625191 1
Deletion Chr1 43121949 43121950 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13147172 13147174 1
Insertion Chr12 25581138 25581142 3

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 2036811 2293249 OsKitaake08g027200
Inversion Chr2 5540464 5724797
Inversion Chr2 5540471 5724809
Inversion Chr4 25858048 25999590
Inversion Chr4 25858064 26009693

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1565711	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g019000
SBS	Chr1	7742716	A-G	Hetero	INTERGENIC
SBS	Chr1	23777103	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g228100
SBS	Chr1	25391058	C-T	Hetero	INTERGENIC
SBS	Chr1	43088619	T-C	Hetero	INTERGENIC
SBS	Chr2	1284272	A-C	Hetero	INTERGENIC
SBS	Chr2	3966670	G-A	Hetero	INTERGENIC
SBS	Chr2	7994352	A-G	Hetero	INTERGENIC
SBS	Chr2	13414705	T-A	Hetero	INTERGENIC
SBS	Chr2	13414706	C-A	Hetero	INTERGENIC
SBS	Chr2	16130469	T-A	Hetero	INTERGENIC
SBS	Chr2	20272141	C-A	Hetero	INTERGENIC
SBS	Chr2	34076514	G-A	Hetero	INTERGENIC
SBS	Chr2	35777209	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g376400
SBS	Chr3	10471747	G-T	Hetero	INTERGENIC
SBS	Chr3	13451615	T-A	Hetero	INTERGENIC
SBS	Chr3	22383340	C-T	Hetero	INTERGENIC
SBS	Chr3	22383341	C-T	Hetero	INTERGENIC
SBS	Chr3	32591277	G-T	Hetero	INTERGENIC
SBS	Chr4	10322307	G-A	Homo	INTERGENIC
SBS	Chr4	30345337	C-A	Hetero	INTERGENIC
SBS	Chr4	30544256	G-T	Hetero	INTERGENIC
SBS	Chr5	17517566	G-A	Hetero	INTERGENIC
SBS	Chr6	3285298	T-A	Hetero	INTERGENIC
SBS	Chr6	14912305	G-A	Homo	INTERGENIC
SBS	Chr6	15984335	C-A	Hetero	INTERGENIC
SBS	Chr6	17287692	T-A	Homo	INTRON
SBS	Chr6	18776249	C-T	Homo	INTRON
SBS	Chr6	24279740	G-T	Hetero	INTERGENIC
SBS	Chr6	25073154	C-T	Hetero	INTERGENIC
SBS	Chr6	29715860	C-T	Hetero	UTR_3_PRIME
SBS	Chr7	905224	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	6744012	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g077500
SBS	Chr7	16577821	G-A	Hetero	INTERGENIC
SBS	Chr7	18366897	T-C	Hetero	INTERGENIC
SBS	Chr7	26793437	G-A	Hetero	INTERGENIC
SBS	Chr8	827707	A-C	Hetero	INTERGENIC
SBS	Chr8	7330871	C-A	Hetero	INTERGENIC
SBS	Chr8	15142869	G-A	Hetero	INTERGENIC
SBS	Chr9	332060	G-A	Hetero	INTERGENIC
SBS	Chr9	10655931	C-T	Hetero	INTERGENIC
SBS	Chr9	12911387	G-A	Hetero	INTERGENIC
SBS	Chr10	2794494	G-C	Hetero	INTRON
SBS	Chr10	7829118	C-G	Hetero	INTERGENIC
SBS	Chr10	14958815	C-T	Hetero	INTERGENIC
SBS	Chr10	17319649	C-A	Hetero	INTERGENIC
SBS	Chr11	8038039	G-A	Hetero	INTERGENIC
SBS	Chr11	9998883	A-G	Hetero	INTERGENIC
SBS	Chr11	12965980	G-A	Hetero	INTERGENIC
SBS	Chr11	14762842	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	14766709	C-T	Hetero	INTERGENIC
SBS	Chr11	21481103	A-C	Hetero	INTERGENIC
SBS	Chr11	21596077	A-C	Hetero	INTERGENIC
SBS	Chr11	27586590	C-T	Hetero	INTERGENIC
SBS	Chr11	29019661	G-A	Hetero	INTERGENIC
SBS	Chr12	16372420	G-T	Hetero	INTERGENIC
SBS	Chr12	19371825	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	1575413	1575415	2
Deletion	Chr8	3196047	3196053	6
Deletion	Chr2	6680914	6680915	1
Deletion	Chr7	6850003	6850005	2
Deletion	Chr12	10727001	10772000	44999	2
Deletion	Chr9	13398950	13398961	11
Deletion	Chr3	16245684	16245686	2
Deletion	Chr7	16578090	16578104	14	OsKitaake07g136200
Deletion	Chr9	22385248	22385260	12	OsKitaake09g203100
Deletion	Chr7	22813003	22813004	1
Deletion	Chr3	24204297	24204298	1
Deletion	Chr1	30625190	30625191	1
Deletion	Chr1	43121949	43121950	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	2036811	2293249	OsKitaake08g027200
Inversion	Chr2	5540464	5724797
Inversion	Chr2	5540471	5724809
Inversion	Chr4	25858048	25999590
Inversion	Chr4	25858064	26009693

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes