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Mutant Information

Mutant Name	FN2788-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2788-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 77

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 196511 G-T Homo INTERGENIC
SBS Chr1 14520224 T-G Hetero INTERGENIC
SBS Chr1 19143314 G-T Hetero INTERGENIC
SBS Chr2 4316438 T-C Hetero INTERGENIC
SBS Chr2 9902130 G-A Hetero INTERGENIC
SBS Chr2 30221136 G-A Hetero UTR_3_PRIME
SBS Chr2 33053625 A-G Hetero INTERGENIC
SBS Chr2 33533647 G-C Homo INTERGENIC
SBS Chr2 36114081 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g380700
SBS Chr3 2569026 G-A Hetero INTERGENIC
SBS Chr3 6533741 G-T Homo INTRON
SBS Chr3 9317939 T-A Hetero INTERGENIC
SBS Chr3 12794601 G-A Hetero INTERGENIC
SBS Chr3 13356721 A-G Hetero INTERGENIC
SBS Chr3 14204870 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g185300
SBS Chr3 14599190 C-A Hetero INTERGENIC
SBS Chr3 17645954 C-G Hetero INTERGENIC
SBS Chr3 21103783 C-T Hetero INTERGENIC
SBS Chr3 22276823 C-G Hetero INTERGENIC
SBS Chr3 25362362 C-T Hetero INTERGENIC
SBS Chr3 25658214 A-T Homo INTERGENIC
SBS Chr4 3163185 T-A Hetero INTERGENIC
SBS Chr4 17593660 G-C Hetero INTERGENIC
SBS Chr4 25420824 C-A Hetero INTERGENIC
SBS Chr4 27209651 C-A Hetero INTERGENIC
SBS Chr4 35664636 A-T Homo INTRON
SBS Chr5 13365766 C-A Hetero INTERGENIC
SBS Chr5 13780228 G-C Hetero INTRON
SBS Chr5 17532396 T-A Hetero INTERGENIC
SBS Chr6 1700524 C-G Hetero INTERGENIC
SBS Chr6 3174715 G-A Hetero INTERGENIC
SBS Chr6 13047776 G-C Hetero SYNONYMOUS_CODING
SBS Chr6 14056552 C-G Hetero SYNONYMOUS_CODING
SBS Chr6 15004388 G-C Hetero INTERGENIC
SBS Chr6 19557182 G-T Hetero INTERGENIC
SBS Chr6 23875269 C-T Hetero INTERGENIC
SBS Chr6 23924434 T-C Homo INTERGENIC
SBS Chr7 2363236 T-C Hetero INTERGENIC
SBS Chr7 3421569 G-A Hetero INTERGENIC
SBS Chr7 6253471 C-A Hetero INTERGENIC
SBS Chr7 6594242 C-T Hetero INTERGENIC
SBS Chr7 11439964 G-A Hetero INTERGENIC
SBS Chr7 16210422 G-A Hetero INTERGENIC
SBS Chr7 24024697 C-T Hetero INTERGENIC
SBS Chr7 26316144 A-G Hetero INTERGENIC
SBS Chr7 26489798 G-A Hetero INTERGENIC
SBS Chr7 27278013 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g254500
SBS Chr8 5025079 C-T Hetero INTERGENIC
SBS Chr8 5737281 G-A Hetero INTERGENIC
SBS Chr8 5869202 G-C Hetero INTERGENIC
SBS Chr8 8274501 C-A Hetero INTERGENIC
SBS Chr8 9914517 T-A Hetero INTERGENIC
SBS Chr8 12988672 G-A Hetero INTERGENIC
SBS Chr8 23120978 C-A Hetero INTERGENIC
SBS Chr8 28996548 G-A Homo START_GAINED
SBS Chr9 4577601 A-G Homo INTERGENIC
SBS Chr9 6851019 C-A Hetero INTERGENIC
SBS Chr9 9353597 G-T Hetero INTERGENIC
SBS Chr9 15689825 G-A Hetero INTRON
SBS Chr9 16076213 C-T Hetero INTERGENIC
SBS Chr9 17681144 G-T Hetero INTERGENIC
SBS Chr10 2347496 G-T Hetero INTERGENIC
SBS Chr10 7227406 C-T Hetero INTERGENIC
SBS Chr10 7338402 C-A Hetero INTERGENIC
SBS Chr10 9000500 G-T Hetero INTERGENIC
SBS Chr10 13837611 G-A Hetero INTERGENIC
SBS Chr10 14942969 C-T Hetero INTERGENIC
SBS Chr10 16989599 G-A Hetero INTERGENIC
SBS Chr10 17265984 G-A Hetero INTERGENIC
SBS Chr10 20321590 T-G Hetero INTRON
SBS Chr11 7068896 A-G Hetero INTERGENIC
SBS Chr11 10510453 G-T Hetero INTRON
SBS Chr11 19502018 C-T Hetero INTERGENIC
SBS Chr11 21370346 C-T Homo INTERGENIC
SBS Chr11 25833857 G-A Homo INTERGENIC
SBS Chr12 21357335 C-T Hetero INTERGENIC
SBS Chr12 22751719 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 41250 41255 5
Deletion Chr6 221958 221959 1
Deletion Chr8 1458001 1486000 27999 2
Deletion Chr12 2092791 2092792 1
Deletion Chr7 2324734 2324744 10
Deletion Chr3 3266318 3266322 4
Deletion Chr3 3268001 3291000 22999 8
Deletion Chr9 5989493 5989506 13
Deletion Chr12 7410386 7410388 2
Deletion Chr2 10394801 10394807 6
Deletion Chr10 11587090 11587091 1 OsKitaake10g069000
Deletion Chr8 19899187 19899196 9
Deletion Chr11 23388447 23388452 5
Deletion Chr5 25181283 25181294 11 OsKitaake05g219350
Deletion Chr1 25650883 25650887 4
Deletion Chr3 35707240 35707241 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 17532767 17532771 3
Insertion Chr8 3471801 3471803 1
Insertion Chr9 6300776 6300779 2
Insertion Chr12 6026374 6026377 2

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 15177491 15906166 2
Inversion Chr1 15177495 15906172 2
Inversion Chr4 22447066 22449802
Inversion Chr4 22447648 22449806
Inversion Chr12 26035299 26058422 OsKitaake12g215501
Inversion Chr1 35161286 35185770 OsKitaake01g370900
Inversion Chr1 35161289 35185771 OsKitaake01g370900

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 16637149 Chr7 26786444 OsKitaake10g113800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	196511	G-T	Homo	INTERGENIC
SBS	Chr1	14520224	T-G	Hetero	INTERGENIC
SBS	Chr1	19143314	G-T	Hetero	INTERGENIC
SBS	Chr2	4316438	T-C	Hetero	INTERGENIC
SBS	Chr2	9902130	G-A	Hetero	INTERGENIC
SBS	Chr2	30221136	G-A	Hetero	UTR_3_PRIME
SBS	Chr2	33053625	A-G	Hetero	INTERGENIC
SBS	Chr2	33533647	G-C	Homo	INTERGENIC
SBS	Chr2	36114081	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g380700
SBS	Chr3	2569026	G-A	Hetero	INTERGENIC
SBS	Chr3	6533741	G-T	Homo	INTRON
SBS	Chr3	9317939	T-A	Hetero	INTERGENIC
SBS	Chr3	12794601	G-A	Hetero	INTERGENIC
SBS	Chr3	13356721	A-G	Hetero	INTERGENIC
SBS	Chr3	14204870	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g185300
SBS	Chr3	14599190	C-A	Hetero	INTERGENIC
SBS	Chr3	17645954	C-G	Hetero	INTERGENIC
SBS	Chr3	21103783	C-T	Hetero	INTERGENIC
SBS	Chr3	22276823	C-G	Hetero	INTERGENIC
SBS	Chr3	25362362	C-T	Hetero	INTERGENIC
SBS	Chr3	25658214	A-T	Homo	INTERGENIC
SBS	Chr4	3163185	T-A	Hetero	INTERGENIC
SBS	Chr4	17593660	G-C	Hetero	INTERGENIC
SBS	Chr4	25420824	C-A	Hetero	INTERGENIC
SBS	Chr4	27209651	C-A	Hetero	INTERGENIC
SBS	Chr4	35664636	A-T	Homo	INTRON
SBS	Chr5	13365766	C-A	Hetero	INTERGENIC
SBS	Chr5	13780228	G-C	Hetero	INTRON
SBS	Chr5	17532396	T-A	Hetero	INTERGENIC
SBS	Chr6	1700524	C-G	Hetero	INTERGENIC
SBS	Chr6	3174715	G-A	Hetero	INTERGENIC
SBS	Chr6	13047776	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr6	14056552	C-G	Hetero	SYNONYMOUS_CODING
SBS	Chr6	15004388	G-C	Hetero	INTERGENIC
SBS	Chr6	19557182	G-T	Hetero	INTERGENIC
SBS	Chr6	23875269	C-T	Hetero	INTERGENIC
SBS	Chr6	23924434	T-C	Homo	INTERGENIC
SBS	Chr7	2363236	T-C	Hetero	INTERGENIC
SBS	Chr7	3421569	G-A	Hetero	INTERGENIC
SBS	Chr7	6253471	C-A	Hetero	INTERGENIC
SBS	Chr7	6594242	C-T	Hetero	INTERGENIC
SBS	Chr7	11439964	G-A	Hetero	INTERGENIC
SBS	Chr7	16210422	G-A	Hetero	INTERGENIC
SBS	Chr7	24024697	C-T	Hetero	INTERGENIC
SBS	Chr7	26316144	A-G	Hetero	INTERGENIC
SBS	Chr7	26489798	G-A	Hetero	INTERGENIC
SBS	Chr7	27278013	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g254500
SBS	Chr8	5025079	C-T	Hetero	INTERGENIC
SBS	Chr8	5737281	G-A	Hetero	INTERGENIC
SBS	Chr8	5869202	G-C	Hetero	INTERGENIC
SBS	Chr8	8274501	C-A	Hetero	INTERGENIC
SBS	Chr8	9914517	T-A	Hetero	INTERGENIC
SBS	Chr8	12988672	G-A	Hetero	INTERGENIC
SBS	Chr8	23120978	C-A	Hetero	INTERGENIC
SBS	Chr8	28996548	G-A	Homo	START_GAINED
SBS	Chr9	4577601	A-G	Homo	INTERGENIC
SBS	Chr9	6851019	C-A	Hetero	INTERGENIC
SBS	Chr9	9353597	G-T	Hetero	INTERGENIC
SBS	Chr9	15689825	G-A	Hetero	INTRON
SBS	Chr9	16076213	C-T	Hetero	INTERGENIC
SBS	Chr9	17681144	G-T	Hetero	INTERGENIC
SBS	Chr10	2347496	G-T	Hetero	INTERGENIC
SBS	Chr10	7227406	C-T	Hetero	INTERGENIC
SBS	Chr10	7338402	C-A	Hetero	INTERGENIC
SBS	Chr10	9000500	G-T	Hetero	INTERGENIC
SBS	Chr10	13837611	G-A	Hetero	INTERGENIC
SBS	Chr10	14942969	C-T	Hetero	INTERGENIC
SBS	Chr10	16989599	G-A	Hetero	INTERGENIC
SBS	Chr10	17265984	G-A	Hetero	INTERGENIC
SBS	Chr10	20321590	T-G	Hetero	INTRON
SBS	Chr11	7068896	A-G	Hetero	INTERGENIC
SBS	Chr11	10510453	G-T	Hetero	INTRON
SBS	Chr11	19502018	C-T	Hetero	INTERGENIC
SBS	Chr11	21370346	C-T	Homo	INTERGENIC
SBS	Chr11	25833857	G-A	Homo	INTERGENIC
SBS	Chr12	21357335	C-T	Hetero	INTERGENIC
SBS	Chr12	22751719	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	41250	41255	5
Deletion	Chr6	221958	221959	1
Deletion	Chr8	1458001	1486000	27999	2
Deletion	Chr12	2092791	2092792	1
Deletion	Chr7	2324734	2324744	10
Deletion	Chr3	3266318	3266322	4
Deletion	Chr3	3268001	3291000	22999	8
Deletion	Chr9	5989493	5989506	13
Deletion	Chr12	7410386	7410388	2
Deletion	Chr2	10394801	10394807	6
Deletion	Chr10	11587090	11587091	1	OsKitaake10g069000
Deletion	Chr8	19899187	19899196	9
Deletion	Chr11	23388447	23388452	5
Deletion	Chr5	25181283	25181294	11	OsKitaake05g219350
Deletion	Chr1	25650883	25650887	4
Deletion	Chr3	35707240	35707241	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15177491	15906166	2
Inversion	Chr1	15177495	15906172	2
Inversion	Chr4	22447066	22449802
Inversion	Chr4	22447648	22449806
Inversion	Chr12	26035299	26058422	OsKitaake12g215501
Inversion	Chr1	35161286	35185770	OsKitaake01g370900
Inversion	Chr1	35161289	35185771	OsKitaake01g370900

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes