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| Mutant Information |
|---|
| Mutant Name | FN2789-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN2789-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 47
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7828170 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 7943715 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 17955853 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24730492 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 33286792 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 10252743 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13535387 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 15155662 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 33439214 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33730430 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 1049578 | A-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake04g008200 |
| SBS | Chr4 | 1520892 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 31859941 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 36344628 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 6543924 | T-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 10975473 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21898957 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 23366736 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 6014603 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 10469184 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15785703 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15785705 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15793317 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15793630 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2486377 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 23192309 | G-T | Homo | INTRON | |
| SBS | Chr8 | 1924317 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2498865 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 2815157 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 11035821 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4207910 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 1037166 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4226090 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9137782 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 11635391 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 15099274 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18609889 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 19259832 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 4920866 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12716821 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 13606138 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 20230074 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 28965512 | G-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12794236 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 16162881 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21001631 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 22292092 | G-C | Hetero | INTERGENIC |
Deletions: 19
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 1302774 | 1302775 | 1 | |
| Deletion | Chr4 | 1559854 | 1559855 | 1 | |
| Deletion | Chr3 | 3947402 | 3947404 | 2 | |
| Deletion | Chr7 | 4973464 | 4973474 | 10 | |
| Deletion | Chr12 | 7366814 | 7366829 | 15 | |
| Deletion | Chr2 | 11772711 | 11772712 | 1 | |
| Deletion | Chr12 | 12274328 | 12274329 | 1 | |
| Deletion | Chr8 | 12553998 | 12554020 | 22 | |
| Deletion | Chr7 | 12599519 | 12599520 | 1 | |
| Deletion | Chr2 | 12899001 | 12911000 | 11999 | 3 |
| Deletion | Chr2 | 13155379 | 13155388 | 9 | |
| Deletion | Chr2 | 13424919 | 13424928 | 9 | |
| Deletion | Chr6 | 13533217 | 13533218 | 1 | OsKitaake06g142000 |
| Deletion | Chr2 | 15537581 | 15537582 | 1 | |
| Deletion | Chr5 | 15897758 | 15897767 | 9 | |
| Deletion | Chr6 | 20158269 | 20158271 | 2 | |
| Deletion | Chr5 | 20543535 | 20543536 | 1 | |
| Deletion | Chr3 | 25502684 | 25502686 | 2 | |
| Deletion | Chr7 | 27387145 | 27387152 | 7 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 16385500 | 16385503 | 2 | |
| Insertion | Chr6 | 6002906 | 6002908 | 1 | OsKitaake06g078900  |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr1 | 7843466 | 7943880 | 2 |
| Inversion | Chr1 | 7843475 | 7943891 | 2 |
| Inversion | Chr4 | 16697971 | 16698513 | OsKitaake04g082000 |
| Inversion | Chr4 | 16698498 | 16700392 | OsKitaake04g082000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 4884096 | Chr9 | 20427943 | 2 |
| Translocation | Chr11 | 4884438 | Chr9 | 20427948 | 2 |