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Mutant Information

Mutant Name	FN2790-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2790-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 46

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 9353991 G-A Homo INTRON
SBS Chr1 20366179 C-A Homo INTERGENIC
SBS Chr1 35796728 G-C Hetero INTERGENIC
SBS Chr1 40873862 C-T Hetero INTERGENIC
SBS Chr2 16751615 C-A Hetero INTRON
SBS Chr3 5270946 C-T Homo START_GAINED
SBS Chr3 23575615 A-T Hetero INTERGENIC
SBS Chr3 25202502 T-A Hetero INTERGENIC
SBS Chr3 34195643 G-C Homo INTERGENIC
SBS Chr4 8050419 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g042100
SBS Chr4 11344018 C-T Hetero INTERGENIC
SBS Chr5 1513261 T-C Homo INTRON
SBS Chr5 5319974 G-A Hetero INTERGENIC
SBS Chr5 9821505 C-T Hetero INTERGENIC
SBS Chr5 14317247 C-T Hetero INTERGENIC
SBS Chr5 19700149 C-G Hetero INTERGENIC
SBS Chr6 7049456 G-A Hetero INTERGENIC
SBS Chr6 16054104 G-A Hetero INTERGENIC
SBS Chr6 30149654 C-T Homo INTERGENIC
SBS Chr6 30917243 G-A Homo INTERGENIC
SBS Chr7 6587342 A-G Hetero INTERGENIC
SBS Chr7 16544904 C-T Hetero INTERGENIC
SBS Chr7 17020701 G-A Hetero INTERGENIC
SBS Chr7 17983499 A-G Hetero INTERGENIC
SBS Chr7 19650582 C-T Hetero INTERGENIC
SBS Chr7 21154975 A-G Hetero INTERGENIC
SBS Chr8 22287824 C-G Hetero INTERGENIC
SBS Chr8 27451506 C-A Hetero INTRON
SBS Chr9 5743558 G-A Hetero INTRON
SBS Chr9 8984376 G-A Hetero INTRON
SBS Chr9 11166629 T-C Hetero INTERGENIC
SBS Chr9 11166636 A-G Hetero INTERGENIC
SBS Chr9 18099565 C-T Homo UTR_3_PRIME
SBS Chr10 16645528 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 23477400 A-G Homo INTERGENIC
SBS Chr11 4823057 G-C Homo INTERGENIC
SBS Chr11 11719587 T-A Homo INTERGENIC
SBS Chr11 14115437 G-T Homo INTERGENIC
SBS Chr11 15111572 C-T Hetero INTERGENIC
SBS Chr11 25007198 G-A Hetero INTERGENIC
SBS Chr11 27062553 C-A Hetero UTR_3_PRIME
SBS Chr12 4219759 C-T Hetero INTERGENIC
SBS Chr12 7549162 T-C Hetero INTERGENIC
SBS Chr12 7776840 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake12g083700
SBS Chr12 12470824 C-T Hetero INTERGENIC
SBS Chr12 22069731 G-A Hetero INTERGENIC

Deletions: 22

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 627364 627365 1
Deletion Chr3 2027497 2027508 11
Deletion Chr8 4247716 4247721 5
Deletion Chr6 4350608 4350610 2
Deletion Chr6 6142062 6142064 2
Deletion Chr12 7687329 7687333 4
Deletion Chr9 9287489 9287490 1
Deletion Chr9 9287784 9287797 13
Deletion Chr7 9521921 9521922 1
Deletion Chr9 13149906 13149910 4
Deletion Chr3 13344380 13344382 2 OsKitaake03g178100
Deletion Chr6 13959973 13959980 7
Deletion Chr11 13965716 13965723 7
Deletion Chr10 15636512 15636513 1
Deletion Chr2 16022519 16022524 5
Deletion Chr10 20149729 20149743 14
Deletion Chr9 21017717 21017725 8
Deletion Chr2 21233871 21233873 2 OsKitaake02g204600
Deletion Chr8 23509576 23509582 6 OsKitaake08g181000
Deletion Chr7 25622987 25622989 2
Deletion Chr1 27246664 27246688 24 OsKitaake01g264800
Deletion Chr3 37451593 37451596 3

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32330678 32330688 9
Insertion Chr3 30028046 30028050 3
Insertion Chr5 5949950 5949953 2
Insertion Chr7 20549615 20549618 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 9856325 Chr3 32962845 OsKitaake03g350300
Translocation Chr11 9856453 Chr3 32960060 OsKitaake03g350200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	9353991	G-A	Homo	INTRON
SBS	Chr1	20366179	C-A	Homo	INTERGENIC
SBS	Chr1	35796728	G-C	Hetero	INTERGENIC
SBS	Chr1	40873862	C-T	Hetero	INTERGENIC
SBS	Chr2	16751615	C-A	Hetero	INTRON
SBS	Chr3	5270946	C-T	Homo	START_GAINED
SBS	Chr3	23575615	A-T	Hetero	INTERGENIC
SBS	Chr3	25202502	T-A	Hetero	INTERGENIC
SBS	Chr3	34195643	G-C	Homo	INTERGENIC
SBS	Chr4	8050419	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g042100
SBS	Chr4	11344018	C-T	Hetero	INTERGENIC
SBS	Chr5	1513261	T-C	Homo	INTRON
SBS	Chr5	5319974	G-A	Hetero	INTERGENIC
SBS	Chr5	9821505	C-T	Hetero	INTERGENIC
SBS	Chr5	14317247	C-T	Hetero	INTERGENIC
SBS	Chr5	19700149	C-G	Hetero	INTERGENIC
SBS	Chr6	7049456	G-A	Hetero	INTERGENIC
SBS	Chr6	16054104	G-A	Hetero	INTERGENIC
SBS	Chr6	30149654	C-T	Homo	INTERGENIC
SBS	Chr6	30917243	G-A	Homo	INTERGENIC
SBS	Chr7	6587342	A-G	Hetero	INTERGENIC
SBS	Chr7	16544904	C-T	Hetero	INTERGENIC
SBS	Chr7	17020701	G-A	Hetero	INTERGENIC
SBS	Chr7	17983499	A-G	Hetero	INTERGENIC
SBS	Chr7	19650582	C-T	Hetero	INTERGENIC
SBS	Chr7	21154975	A-G	Hetero	INTERGENIC
SBS	Chr8	22287824	C-G	Hetero	INTERGENIC
SBS	Chr8	27451506	C-A	Hetero	INTRON
SBS	Chr9	5743558	G-A	Hetero	INTRON
SBS	Chr9	8984376	G-A	Hetero	INTRON
SBS	Chr9	11166629	T-C	Hetero	INTERGENIC
SBS	Chr9	11166636	A-G	Hetero	INTERGENIC
SBS	Chr9	18099565	C-T	Homo	UTR_3_PRIME
SBS	Chr10	16645528	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	23477400	A-G	Homo	INTERGENIC
SBS	Chr11	4823057	G-C	Homo	INTERGENIC
SBS	Chr11	11719587	T-A	Homo	INTERGENIC
SBS	Chr11	14115437	G-T	Homo	INTERGENIC
SBS	Chr11	15111572	C-T	Hetero	INTERGENIC
SBS	Chr11	25007198	G-A	Hetero	INTERGENIC
SBS	Chr11	27062553	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	4219759	C-T	Hetero	INTERGENIC
SBS	Chr12	7549162	T-C	Hetero	INTERGENIC
SBS	Chr12	7776840	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g083700
SBS	Chr12	12470824	C-T	Hetero	INTERGENIC
SBS	Chr12	22069731	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	627364	627365	1
Deletion	Chr3	2027497	2027508	11
Deletion	Chr8	4247716	4247721	5
Deletion	Chr6	4350608	4350610	2
Deletion	Chr6	6142062	6142064	2
Deletion	Chr12	7687329	7687333	4
Deletion	Chr9	9287489	9287490	1
Deletion	Chr9	9287784	9287797	13
Deletion	Chr7	9521921	9521922	1
Deletion	Chr9	13149906	13149910	4
Deletion	Chr3	13344380	13344382	2	OsKitaake03g178100
Deletion	Chr6	13959973	13959980	7
Deletion	Chr11	13965716	13965723	7
Deletion	Chr10	15636512	15636513	1
Deletion	Chr2	16022519	16022524	5
Deletion	Chr10	20149729	20149743	14
Deletion	Chr9	21017717	21017725	8
Deletion	Chr2	21233871	21233873	2	OsKitaake02g204600
Deletion	Chr8	23509576	23509582	6	OsKitaake08g181000
Deletion	Chr7	25622987	25622989	2
Deletion	Chr1	27246664	27246688	24	OsKitaake01g264800
Deletion	Chr3	37451593	37451596	3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	9856325	Chr3	32962845	OsKitaake03g350300
Translocation	Chr11	9856453	Chr3	32960060	OsKitaake03g350200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes