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Mutant Information

Mutant Name	FN2791-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2791-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 84

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6839473 A-T Hetero INTERGENIC
SBS Chr1 10011778 G-A Homo INTERGENIC
SBS Chr1 16621119 T-C Hetero UTR_3_PRIME
SBS Chr1 32612347 C-A Hetero INTERGENIC
SBS Chr1 34474942 T-C Hetero INTERGENIC
SBS Chr1 42723350 G-A Hetero INTERGENIC
SBS Chr2 12721054 C-G Hetero INTERGENIC
SBS Chr2 15111559 C-T Hetero INTERGENIC
SBS Chr2 16220953 G-A Hetero INTERGENIC
SBS Chr2 17539052 G-A Hetero INTERGENIC
SBS Chr2 18013189 A-T Hetero INTRON
SBS Chr2 26526319 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g265100
SBS Chr3 914732 C-A Hetero INTERGENIC
SBS Chr3 11420887 T-G Hetero INTERGENIC
SBS Chr3 17000472 T-A Hetero INTERGENIC
SBS Chr3 19692410 G-A Hetero INTERGENIC
SBS Chr3 20601885 C-T Hetero INTERGENIC
SBS Chr3 20699335 C-T Hetero INTERGENIC
SBS Chr3 22373409 G-A Hetero INTERGENIC
SBS Chr3 22862811 C-A Homo INTRON
SBS Chr3 23176217 G-A Hetero INTERGENIC
SBS Chr3 23472504 A-C Hetero INTERGENIC
SBS Chr3 26535033 C-T Hetero INTERGENIC
SBS Chr3 28003824 A-C Hetero INTERGENIC
SBS Chr4 4126430 C-G Hetero INTERGENIC
SBS Chr4 5808832 T-A Hetero INTERGENIC
SBS Chr4 9104091 A-G Hetero INTERGENIC
SBS Chr4 11854111 G-A Hetero INTERGENIC
SBS Chr4 15673362 G-A Hetero INTERGENIC
SBS Chr4 18081714 C-T Hetero INTERGENIC
SBS Chr4 21453363 G-A Hetero INTERGENIC
SBS Chr4 21773694 C-G Hetero INTERGENIC
SBS Chr4 29242133 T-C Hetero INTERGENIC
SBS Chr5 5478392 C-T Hetero INTERGENIC
SBS Chr5 6604032 T-G Hetero INTRON
SBS Chr5 14173744 G-A Hetero INTERGENIC
SBS Chr5 17125804 T-G Hetero INTERGENIC
SBS Chr5 24740428 A-T Hetero INTERGENIC
SBS Chr5 30076350 G-A Hetero INTERGENIC
SBS Chr6 1077918 A-T Hetero INTERGENIC
SBS Chr6 8204037 G-A Hetero INTERGENIC
SBS Chr6 8840357 G-T Hetero INTERGENIC
SBS Chr6 17270505 C-T Hetero INTERGENIC
SBS Chr6 24673667 G-A Hetero INTRON
SBS Chr6 27637485 A-T Hetero INTERGENIC
SBS Chr7 13448531 C-T Homo INTERGENIC
SBS Chr7 16875050 C-A Hetero INTERGENIC
SBS Chr7 22602749 C-T Hetero INTERGENIC
SBS Chr7 24321800 A-G Hetero UTR_5_PRIME
SBS Chr8 1207691 G-A Hetero INTERGENIC
SBS Chr8 2659202 G-A Hetero INTERGENIC
SBS Chr8 9981336 C-T Hetero INTERGENIC
SBS Chr8 13700618 G-A Hetero INTERGENIC
SBS Chr8 21847963 C-T Hetero INTERGENIC
SBS Chr8 24409529 C-T Hetero INTERGENIC
SBS Chr8 29149386 C-A Hetero INTERGENIC
SBS Chr8 29196135 T-C Hetero INTERGENIC
SBS Chr9 1083755 T-A Hetero INTERGENIC
SBS Chr9 1276585 G-C Hetero INTERGENIC
SBS Chr9 5135293 G-T Hetero INTERGENIC
SBS Chr9 11744325 T-C Hetero INTERGENIC
SBS Chr9 16714941 C-G Hetero INTRON
SBS Chr9 16752831 C-T Hetero INTERGENIC
SBS Chr10 811722 A-G Homo INTERGENIC
SBS Chr10 1332145 C-A Hetero INTERGENIC
SBS Chr10 13628309 A-G Hetero INTERGENIC
SBS Chr10 21340779 A-T Homo INTERGENIC
SBS Chr11 2162648 T-C Hetero INTERGENIC
SBS Chr11 2725430 G-A Hetero INTRON
SBS Chr11 2725431 C-A Hetero INTRON
SBS Chr11 3593081 G-A Hetero INTRON
SBS Chr11 7410978 T-C Hetero INTERGENIC
SBS Chr11 12571743 A-C Homo INTERGENIC
SBS Chr11 12571744 C-T Homo INTERGENIC
SBS Chr11 19497526 C-T Hetero INTERGENIC
SBS Chr11 26629755 C-G Hetero INTERGENIC
SBS Chr11 28401442 T-C Homo INTERGENIC
SBS Chr12 6650725 T-G Homo INTERGENIC
SBS Chr12 7845844 T-C Hetero INTERGENIC
SBS Chr12 13154733 C-A Hetero INTERGENIC
SBS Chr12 13845706 T-C Hetero INTERGENIC
SBS Chr12 13980254 C-A Hetero INTERGENIC
SBS Chr12 16007263 C-A Hetero INTERGENIC
SBS Chr12 23841669 T-C Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1236251 1236252 1
Deletion Chr11 4091090 4091091 1 OsKitaake11g055800
Deletion Chr3 5603822 5603823 1
Deletion Chr5 6911389 6911393 4
Deletion Chr9 8402161 8402163 2
Deletion Chr6 8554286 8554295 9
Deletion Chr5 8661974 8661977 3
Deletion Chr3 10084169 10084170 1
Deletion Chr10 17230622 17230625 3
Deletion Chr10 20881918 20881927 9
Deletion Chr10 21339539 21339549 10
Deletion Chr2 26267342 26267346 4
Deletion Chr6 27922001 27930000 7999 OsKitaake06g253400
Deletion Chr7 27974688 27974692 4 OsKitaake07g263300
Deletion Chr2 28698404 28698406 2
Deletion Chr2 31737020 31737021 1 OsKitaake02g323200
Deletion Chr3 36350407 36350408 1 OsKitaake03g403300

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 6616002 6616004 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 10311383 10791388

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6839473	A-T	Hetero	INTERGENIC
SBS	Chr1	10011778	G-A	Homo	INTERGENIC
SBS	Chr1	16621119	T-C	Hetero	UTR_3_PRIME
SBS	Chr1	32612347	C-A	Hetero	INTERGENIC
SBS	Chr1	34474942	T-C	Hetero	INTERGENIC
SBS	Chr1	42723350	G-A	Hetero	INTERGENIC
SBS	Chr2	12721054	C-G	Hetero	INTERGENIC
SBS	Chr2	15111559	C-T	Hetero	INTERGENIC
SBS	Chr2	16220953	G-A	Hetero	INTERGENIC
SBS	Chr2	17539052	G-A	Hetero	INTERGENIC
SBS	Chr2	18013189	A-T	Hetero	INTRON
SBS	Chr2	26526319	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g265100
SBS	Chr3	914732	C-A	Hetero	INTERGENIC
SBS	Chr3	11420887	T-G	Hetero	INTERGENIC
SBS	Chr3	17000472	T-A	Hetero	INTERGENIC
SBS	Chr3	19692410	G-A	Hetero	INTERGENIC
SBS	Chr3	20601885	C-T	Hetero	INTERGENIC
SBS	Chr3	20699335	C-T	Hetero	INTERGENIC
SBS	Chr3	22373409	G-A	Hetero	INTERGENIC
SBS	Chr3	22862811	C-A	Homo	INTRON
SBS	Chr3	23176217	G-A	Hetero	INTERGENIC
SBS	Chr3	23472504	A-C	Hetero	INTERGENIC
SBS	Chr3	26535033	C-T	Hetero	INTERGENIC
SBS	Chr3	28003824	A-C	Hetero	INTERGENIC
SBS	Chr4	4126430	C-G	Hetero	INTERGENIC
SBS	Chr4	5808832	T-A	Hetero	INTERGENIC
SBS	Chr4	9104091	A-G	Hetero	INTERGENIC
SBS	Chr4	11854111	G-A	Hetero	INTERGENIC
SBS	Chr4	15673362	G-A	Hetero	INTERGENIC
SBS	Chr4	18081714	C-T	Hetero	INTERGENIC
SBS	Chr4	21453363	G-A	Hetero	INTERGENIC
SBS	Chr4	21773694	C-G	Hetero	INTERGENIC
SBS	Chr4	29242133	T-C	Hetero	INTERGENIC
SBS	Chr5	5478392	C-T	Hetero	INTERGENIC
SBS	Chr5	6604032	T-G	Hetero	INTRON
SBS	Chr5	14173744	G-A	Hetero	INTERGENIC
SBS	Chr5	17125804	T-G	Hetero	INTERGENIC
SBS	Chr5	24740428	A-T	Hetero	INTERGENIC
SBS	Chr5	30076350	G-A	Hetero	INTERGENIC
SBS	Chr6	1077918	A-T	Hetero	INTERGENIC
SBS	Chr6	8204037	G-A	Hetero	INTERGENIC
SBS	Chr6	8840357	G-T	Hetero	INTERGENIC
SBS	Chr6	17270505	C-T	Hetero	INTERGENIC
SBS	Chr6	24673667	G-A	Hetero	INTRON
SBS	Chr6	27637485	A-T	Hetero	INTERGENIC
SBS	Chr7	13448531	C-T	Homo	INTERGENIC
SBS	Chr7	16875050	C-A	Hetero	INTERGENIC
SBS	Chr7	22602749	C-T	Hetero	INTERGENIC
SBS	Chr7	24321800	A-G	Hetero	UTR_5_PRIME
SBS	Chr8	1207691	G-A	Hetero	INTERGENIC
SBS	Chr8	2659202	G-A	Hetero	INTERGENIC
SBS	Chr8	9981336	C-T	Hetero	INTERGENIC
SBS	Chr8	13700618	G-A	Hetero	INTERGENIC
SBS	Chr8	21847963	C-T	Hetero	INTERGENIC
SBS	Chr8	24409529	C-T	Hetero	INTERGENIC
SBS	Chr8	29149386	C-A	Hetero	INTERGENIC
SBS	Chr8	29196135	T-C	Hetero	INTERGENIC
SBS	Chr9	1083755	T-A	Hetero	INTERGENIC
SBS	Chr9	1276585	G-C	Hetero	INTERGENIC
SBS	Chr9	5135293	G-T	Hetero	INTERGENIC
SBS	Chr9	11744325	T-C	Hetero	INTERGENIC
SBS	Chr9	16714941	C-G	Hetero	INTRON
SBS	Chr9	16752831	C-T	Hetero	INTERGENIC
SBS	Chr10	811722	A-G	Homo	INTERGENIC
SBS	Chr10	1332145	C-A	Hetero	INTERGENIC
SBS	Chr10	13628309	A-G	Hetero	INTERGENIC
SBS	Chr10	21340779	A-T	Homo	INTERGENIC
SBS	Chr11	2162648	T-C	Hetero	INTERGENIC
SBS	Chr11	2725430	G-A	Hetero	INTRON
SBS	Chr11	2725431	C-A	Hetero	INTRON
SBS	Chr11	3593081	G-A	Hetero	INTRON
SBS	Chr11	7410978	T-C	Hetero	INTERGENIC
SBS	Chr11	12571743	A-C	Homo	INTERGENIC
SBS	Chr11	12571744	C-T	Homo	INTERGENIC
SBS	Chr11	19497526	C-T	Hetero	INTERGENIC
SBS	Chr11	26629755	C-G	Hetero	INTERGENIC
SBS	Chr11	28401442	T-C	Homo	INTERGENIC
SBS	Chr12	6650725	T-G	Homo	INTERGENIC
SBS	Chr12	7845844	T-C	Hetero	INTERGENIC
SBS	Chr12	13154733	C-A	Hetero	INTERGENIC
SBS	Chr12	13845706	T-C	Hetero	INTERGENIC
SBS	Chr12	13980254	C-A	Hetero	INTERGENIC
SBS	Chr12	16007263	C-A	Hetero	INTERGENIC
SBS	Chr12	23841669	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1236251	1236252	1
Deletion	Chr11	4091090	4091091	1	OsKitaake11g055800
Deletion	Chr3	5603822	5603823	1
Deletion	Chr5	6911389	6911393	4
Deletion	Chr9	8402161	8402163	2
Deletion	Chr6	8554286	8554295	9
Deletion	Chr5	8661974	8661977	3
Deletion	Chr3	10084169	10084170	1
Deletion	Chr10	17230622	17230625	3
Deletion	Chr10	20881918	20881927	9
Deletion	Chr10	21339539	21339549	10
Deletion	Chr2	26267342	26267346	4
Deletion	Chr6	27922001	27930000	7999	OsKitaake06g253400
Deletion	Chr7	27974688	27974692	4	OsKitaake07g263300
Deletion	Chr2	28698404	28698406	2
Deletion	Chr2	31737020	31737021	1	OsKitaake02g323200
Deletion	Chr3	36350407	36350408	1	OsKitaake03g403300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	10311383	10791388

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes