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Mutant Information

Mutant Name	FN2792-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2792-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1877792 A-T Hetero INTERGENIC
SBS Chr1 2091700 C-T Hetero INTRON
SBS Chr1 30400684 G-A Hetero SYNONYMOUS_CODING
SBS Chr1 35887631 T-C Hetero INTERGENIC
SBS Chr1 40998655 A-G Hetero INTERGENIC
SBS Chr2 723153 C-A Homo INTERGENIC
SBS Chr2 12892241 G-A Hetero INTERGENIC
SBS Chr2 15434264 G-C Hetero INTERGENIC
SBS Chr2 15434274 G-A Hetero INTERGENIC
SBS Chr2 16046527 G-T Hetero INTERGENIC
SBS Chr2 16046528 A-T Hetero INTERGENIC
SBS Chr2 27683309 A-C Hetero INTRON
SBS Chr3 24473185 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g261500
SBS Chr3 26660270 G-A Hetero INTERGENIC
SBS Chr4 13768662 C-T Hetero INTERGENIC
SBS Chr4 17161434 A-T Hetero UTR_3_PRIME
SBS Chr4 18764619 G-C Hetero INTERGENIC
SBS Chr5 10820911 C-T Homo INTERGENIC
SBS Chr5 17953705 C-A Hetero INTERGENIC
SBS Chr7 26494773 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g244800
SBS Chr7 27591320 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g257200
SBS Chr8 3153294 T-A Homo INTERGENIC
SBS Chr9 600741 G-C Hetero INTERGENIC
SBS Chr9 7895329 C-T Hetero INTERGENIC
SBS Chr9 10890742 C-A Hetero INTRON
SBS Chr10 5747128 G-A Homo INTERGENIC
SBS Chr10 8556673 A-C Homo UTR_5_PRIME
SBS Chr10 17076997 A-G Homo INTERGENIC
SBS Chr11 2940811 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake11g041600
SBS Chr11 5720263 A-G Hetero INTERGENIC
SBS Chr11 10094883 T-C Hetero INTRON
SBS Chr11 10772736 T-C Hetero INTERGENIC
SBS Chr11 13377200 G-A Hetero INTERGENIC
SBS Chr11 17807386 A-G Hetero UTR_3_PRIME
SBS Chr11 28213457 A-G Hetero INTERGENIC
SBS Chr12 7617699 G-A Hetero INTERGENIC
SBS Chr12 8229690 G-A Hetero INTRON
SBS Chr12 18934383 T-A Homo INTERGENIC
SBS Chr12 21559366 C-G Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 54865 54870 5
Deletion Chr6 1088697 1088714 17
Deletion Chr7 4187192 4187222 30
Deletion Chr8 4246710 4246711 1
Deletion Chr8 9427326 9427337 11
Deletion Chr2 10179404 10179415 11
Deletion Chr7 11337688 11337689 1
Deletion Chr7 14428610 14428619 9
Deletion Chr6 17310214 17310216 2
Deletion Chr2 18651572 18651574 2
Deletion Chr12 20590288 20590306 18
Deletion Chr9 20693893 20693896 3
Deletion Chr12 20780281 20780285 4
Deletion Chr1 23255001 23270000 14999 OsKitaake01g222400
Deletion Chr3 29072010 29072012 2
Deletion Chr4 36470185 36470189 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 27527653 27527656 2
Insertion Chr4 33669529 33669532 2 OsKitaake04g279200

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 9843849 10730620

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1877792	A-T	Hetero	INTERGENIC
SBS	Chr1	2091700	C-T	Hetero	INTRON
SBS	Chr1	30400684	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	35887631	T-C	Hetero	INTERGENIC
SBS	Chr1	40998655	A-G	Hetero	INTERGENIC
SBS	Chr2	723153	C-A	Homo	INTERGENIC
SBS	Chr2	12892241	G-A	Hetero	INTERGENIC
SBS	Chr2	15434264	G-C	Hetero	INTERGENIC
SBS	Chr2	15434274	G-A	Hetero	INTERGENIC
SBS	Chr2	16046527	G-T	Hetero	INTERGENIC
SBS	Chr2	16046528	A-T	Hetero	INTERGENIC
SBS	Chr2	27683309	A-C	Hetero	INTRON
SBS	Chr3	24473185	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g261500
SBS	Chr3	26660270	G-A	Hetero	INTERGENIC
SBS	Chr4	13768662	C-T	Hetero	INTERGENIC
SBS	Chr4	17161434	A-T	Hetero	UTR_3_PRIME
SBS	Chr4	18764619	G-C	Hetero	INTERGENIC
SBS	Chr5	10820911	C-T	Homo	INTERGENIC
SBS	Chr5	17953705	C-A	Hetero	INTERGENIC
SBS	Chr7	26494773	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g244800
SBS	Chr7	27591320	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g257200
SBS	Chr8	3153294	T-A	Homo	INTERGENIC
SBS	Chr9	600741	G-C	Hetero	INTERGENIC
SBS	Chr9	7895329	C-T	Hetero	INTERGENIC
SBS	Chr9	10890742	C-A	Hetero	INTRON
SBS	Chr10	5747128	G-A	Homo	INTERGENIC
SBS	Chr10	8556673	A-C	Homo	UTR_5_PRIME
SBS	Chr10	17076997	A-G	Homo	INTERGENIC
SBS	Chr11	2940811	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g041600
SBS	Chr11	5720263	A-G	Hetero	INTERGENIC
SBS	Chr11	10094883	T-C	Hetero	INTRON
SBS	Chr11	10772736	T-C	Hetero	INTERGENIC
SBS	Chr11	13377200	G-A	Hetero	INTERGENIC
SBS	Chr11	17807386	A-G	Hetero	UTR_3_PRIME
SBS	Chr11	28213457	A-G	Hetero	INTERGENIC
SBS	Chr12	7617699	G-A	Hetero	INTERGENIC
SBS	Chr12	8229690	G-A	Hetero	INTRON
SBS	Chr12	18934383	T-A	Homo	INTERGENIC
SBS	Chr12	21559366	C-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	54865	54870	5
Deletion	Chr6	1088697	1088714	17
Deletion	Chr7	4187192	4187222	30
Deletion	Chr8	4246710	4246711	1
Deletion	Chr8	9427326	9427337	11
Deletion	Chr2	10179404	10179415	11
Deletion	Chr7	11337688	11337689	1
Deletion	Chr7	14428610	14428619	9
Deletion	Chr6	17310214	17310216	2
Deletion	Chr2	18651572	18651574	2
Deletion	Chr12	20590288	20590306	18
Deletion	Chr9	20693893	20693896	3
Deletion	Chr12	20780281	20780285	4
Deletion	Chr1	23255001	23270000	14999	OsKitaake01g222400
Deletion	Chr3	29072010	29072012	2
Deletion	Chr4	36470185	36470189	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	9843849	10730620

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes