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Mutant Information

Mutant Name	FN2794-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN2794-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 65

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3024659 G-A Hetero INTERGENIC
SBS Chr1 11320239 G-A Hetero INTERGENIC
SBS Chr1 12085472 C-A Hetero INTRON
SBS Chr1 12937338 T-C Hetero INTERGENIC
SBS Chr1 15881470 C-T Hetero INTERGENIC
SBS Chr1 28299003 C-A Hetero INTERGENIC
SBS Chr1 36926257 T-C Hetero INTERGENIC
SBS Chr1 37785694 T-C Homo INTERGENIC
SBS Chr2 8473548 C-T Homo INTERGENIC
SBS Chr2 10004448 C-T Hetero INTERGENIC
SBS Chr2 16301255 G-A Hetero INTERGENIC
SBS Chr2 16484757 C-A Hetero INTERGENIC
SBS Chr2 25661707 T-A Hetero INTRON
SBS Chr2 26882234 T-C Homo INTERGENIC
SBS Chr2 33435005 C-T Hetero INTERGENIC
SBS Chr3 293968 G-A Hetero INTERGENIC
SBS Chr3 458062 C-T Hetero INTERGENIC
SBS Chr3 928158 C-G Hetero INTERGENIC
SBS Chr3 18642513 G-A Hetero INTERGENIC
SBS Chr3 19443326 T-C Hetero INTERGENIC
SBS Chr3 20394310 C-A Hetero INTERGENIC
SBS Chr3 24244207 C-T Hetero INTERGENIC
SBS Chr4 2512283 C-T Hetero INTERGENIC
SBS Chr4 5681834 T-G Homo INTERGENIC
SBS Chr4 10003347 C-T Homo INTERGENIC
SBS Chr4 17960507 C-T Hetero INTERGENIC
SBS Chr4 21727305 C-A Hetero INTERGENIC
SBS Chr4 25884160 T-C Hetero INTRON
SBS Chr4 36626293 T-A Hetero INTERGENIC
SBS Chr5 119517 A-G Hetero INTERGENIC
SBS Chr5 982054 T-A Hetero INTERGENIC
SBS Chr5 7907964 A-T Hetero INTERGENIC
SBS Chr5 17391931 T-C Hetero INTERGENIC
SBS Chr5 23466080 G-A Hetero INTERGENIC
SBS Chr6 23734564 T-A Homo INTERGENIC
SBS Chr6 25218139 G-A Homo INTERGENIC
SBS Chr6 27311274 T-A Homo INTRON
SBS Chr7 3679467 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g047400
SBS Chr7 10525874 C-A Homo INTERGENIC
SBS Chr7 12984131 A-G Hetero INTERGENIC
SBS Chr8 696661 C-T Homo UTR_3_PRIME
SBS Chr8 2236036 G-T Homo INTERGENIC
SBS Chr8 3160751 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake08g035800
SBS Chr8 12382650 C-G Hetero INTERGENIC
SBS Chr9 1320776 G-T Hetero INTERGENIC
SBS Chr9 5322187 C-T Hetero INTERGENIC
SBS Chr9 14966431 A-T Homo INTERGENIC
SBS Chr9 18490853 C-A Hetero INTERGENIC
SBS Chr9 18957207 T-A Hetero INTRON
SBS Chr9 21807021 C-T Homo INTRON
SBS Chr10 621473 C-T Hetero INTERGENIC
SBS Chr10 1907683 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 2768218 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake10g022700
SBS Chr10 10289020 G-A Hetero INTERGENIC
SBS Chr10 13109008 G-C Hetero INTERGENIC
SBS Chr11 3909173 G-A Hetero INTERGENIC
SBS Chr11 5243917 T-A Homo NON_SYNONYMOUS_CODING OsKitaake11g066000
SBS Chr11 10920116 C-G Hetero INTERGENIC
SBS Chr11 11734434 T-C Homo INTERGENIC
SBS Chr11 15091021 G-C Hetero INTERGENIC
SBS Chr11 18869499 C-T Hetero INTERGENIC
SBS Chr12 9461118 G-A Hetero INTERGENIC
SBS Chr12 16759557 T-C Hetero INTERGENIC
SBS Chr12 22377595 C-T Hetero INTERGENIC
SBS Chr12 25395315 T-G Homo INTRON

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 104117 104119 2
Deletion Chr8 3883093 3883100 7
Deletion Chr9 7570344 7570351 7
Deletion Chr10 8680660 8680662 2
Deletion Chr7 10191154 10191161 7
Deletion Chr10 10242544 10242547 3
Deletion Chr11 12777061 12777084 23
Deletion Chr9 13829573 13829579 6
Deletion Chr10 13939230 13939231 1
Deletion Chr2 14568791 14568813 22
Deletion Chr5 16029921 16029923 2
Deletion Chr8 17757892 17757901 9
Deletion Chr1 21443624 21443628 4
Deletion Chr11 24226265 24226266 1
Deletion Chr12 24439001 24446000 6999
Deletion Chr11 26954102 26954107 5
Deletion Chr11 27261205 27261206 1 OsKitaake11g222900
Deletion Chr2 29462269 29462270 1

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 42414429 42414432 2
Insertion Chr12 20347672 20347679 6

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 24353951 24589531
Inversion Chr12 24525853 24589008 OsKitaake12g198200
Inversion Chr3 27292553 27721532 OsKitaake03g286600
Inversion Chr3 27292554 27721533 OsKitaake03g286600

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 7506965 Chr4 35689422 2
Translocation Chr7 10592463 Chr4 9985894
Translocation Chr12 24589521 Chr6 7510549

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3024659	G-A	Hetero	INTERGENIC
SBS	Chr1	11320239	G-A	Hetero	INTERGENIC
SBS	Chr1	12085472	C-A	Hetero	INTRON
SBS	Chr1	12937338	T-C	Hetero	INTERGENIC
SBS	Chr1	15881470	C-T	Hetero	INTERGENIC
SBS	Chr1	28299003	C-A	Hetero	INTERGENIC
SBS	Chr1	36926257	T-C	Hetero	INTERGENIC
SBS	Chr1	37785694	T-C	Homo	INTERGENIC
SBS	Chr2	8473548	C-T	Homo	INTERGENIC
SBS	Chr2	10004448	C-T	Hetero	INTERGENIC
SBS	Chr2	16301255	G-A	Hetero	INTERGENIC
SBS	Chr2	16484757	C-A	Hetero	INTERGENIC
SBS	Chr2	25661707	T-A	Hetero	INTRON
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr2	33435005	C-T	Hetero	INTERGENIC
SBS	Chr3	293968	G-A	Hetero	INTERGENIC
SBS	Chr3	458062	C-T	Hetero	INTERGENIC
SBS	Chr3	928158	C-G	Hetero	INTERGENIC
SBS	Chr3	18642513	G-A	Hetero	INTERGENIC
SBS	Chr3	19443326	T-C	Hetero	INTERGENIC
SBS	Chr3	20394310	C-A	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr4	2512283	C-T	Hetero	INTERGENIC
SBS	Chr4	5681834	T-G	Homo	INTERGENIC
SBS	Chr4	10003347	C-T	Homo	INTERGENIC
SBS	Chr4	17960507	C-T	Hetero	INTERGENIC
SBS	Chr4	21727305	C-A	Hetero	INTERGENIC
SBS	Chr4	25884160	T-C	Hetero	INTRON
SBS	Chr4	36626293	T-A	Hetero	INTERGENIC
SBS	Chr5	119517	A-G	Hetero	INTERGENIC
SBS	Chr5	982054	T-A	Hetero	INTERGENIC
SBS	Chr5	7907964	A-T	Hetero	INTERGENIC
SBS	Chr5	17391931	T-C	Hetero	INTERGENIC
SBS	Chr5	23466080	G-A	Hetero	INTERGENIC
SBS	Chr6	23734564	T-A	Homo	INTERGENIC
SBS	Chr6	25218139	G-A	Homo	INTERGENIC
SBS	Chr6	27311274	T-A	Homo	INTRON
SBS	Chr7	3679467	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g047400
SBS	Chr7	10525874	C-A	Homo	INTERGENIC
SBS	Chr7	12984131	A-G	Hetero	INTERGENIC
SBS	Chr8	696661	C-T	Homo	UTR_3_PRIME
SBS	Chr8	2236036	G-T	Homo	INTERGENIC
SBS	Chr8	3160751	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g035800
SBS	Chr8	12382650	C-G	Hetero	INTERGENIC
SBS	Chr9	1320776	G-T	Hetero	INTERGENIC
SBS	Chr9	5322187	C-T	Hetero	INTERGENIC
SBS	Chr9	14966431	A-T	Homo	INTERGENIC
SBS	Chr9	18490853	C-A	Hetero	INTERGENIC
SBS	Chr9	18957207	T-A	Hetero	INTRON
SBS	Chr9	21807021	C-T	Homo	INTRON
SBS	Chr10	621473	C-T	Hetero	INTERGENIC
SBS	Chr10	1907683	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	2768218	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g022700
SBS	Chr10	10289020	G-A	Hetero	INTERGENIC
SBS	Chr10	13109008	G-C	Hetero	INTERGENIC
SBS	Chr11	3909173	G-A	Hetero	INTERGENIC
SBS	Chr11	5243917	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g066000
SBS	Chr11	10920116	C-G	Hetero	INTERGENIC
SBS	Chr11	11734434	T-C	Homo	INTERGENIC
SBS	Chr11	15091021	G-C	Hetero	INTERGENIC
SBS	Chr11	18869499	C-T	Hetero	INTERGENIC
SBS	Chr12	9461118	G-A	Hetero	INTERGENIC
SBS	Chr12	16759557	T-C	Hetero	INTERGENIC
SBS	Chr12	22377595	C-T	Hetero	INTERGENIC
SBS	Chr12	25395315	T-G	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	104117	104119	2
Deletion	Chr8	3883093	3883100	7
Deletion	Chr9	7570344	7570351	7
Deletion	Chr10	8680660	8680662	2
Deletion	Chr7	10191154	10191161	7
Deletion	Chr10	10242544	10242547	3
Deletion	Chr11	12777061	12777084	23
Deletion	Chr9	13829573	13829579	6
Deletion	Chr10	13939230	13939231	1
Deletion	Chr2	14568791	14568813	22
Deletion	Chr5	16029921	16029923	2
Deletion	Chr8	17757892	17757901	9
Deletion	Chr1	21443624	21443628	4
Deletion	Chr11	24226265	24226266	1
Deletion	Chr12	24439001	24446000	6999
Deletion	Chr11	26954102	26954107	5
Deletion	Chr11	27261205	27261206	1	OsKitaake11g222900
Deletion	Chr2	29462269	29462270	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	24353951	24589531
Inversion	Chr12	24525853	24589008	OsKitaake12g198200
Inversion	Chr3	27292553	27721532	OsKitaake03g286600
Inversion	Chr3	27292554	27721533	OsKitaake03g286600

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes